HHsearch alignment for GI: 254780941 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=2.3e-16 Score=125.70 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC------------------------EEEECCC------CCCEEEEEEEEEEECCEEEE
Q ss_conf 89983389986889999986892------------------------0210588------88602127899973994899
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK------------------------VSIVTHK------VQTTRSIVRGIVSEKESQIV 73 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~------------------------vsivS~k------~~TTr~~i~gi~~~~~~qii 73 (311)
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH-------HHCCHHHHHHHHHHCCCC-CEEEEEECCCHH-
Q ss_conf 99879840101235753210023455553210011000010-------000000122345442872-025787211010-
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-------LKVNIHDLLKEIAKRSSR-LILILNKIDCVK- 144 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~-------~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~- 144 (311)
T Consensus 81 iiDtPG--------H~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~ 152 (219)
T cd01883 81 ILDAPG--------HRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCC--------CHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 987897--------266788999877531668999985767510366777659999999998499748999987536886
Q ss_pred ---HHH---HHHHHHHHHHCCCC----CCCCCCCCCCCCCHH
Q ss_conf ---434---57888864100123----343110001387426
Q gi|254780941|r 145 ---PER---LLEQAEIANKLVFI----EKTFMVSATKGHGCD 176 (311)
Q Consensus 145 ---~~~---l~~~~~~~~~~~~~----~~i~~ISAk~g~Gid 176 (311)
T Consensus 153 ~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~ 194 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
T ss_conf 525999999999999999982999566159993367663046