HHsearch alignment for GI: 254780941 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=5.4e-20 Score=149.20 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE---------EECC------C------CCCEEEE-------EEEEE-------EEC
Q ss_conf 8998338998688999998689202---------1058------8------8860212-------78999-------739
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVS---------IVTH------K------VQTTRSI-------VRGIV-------SEK 68 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vs---------ivS~------k------~~TTr~~-------i~gi~-------~~~ 68 (311)
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 69999885787999999970851244078886776031114566665111212231011110124421453145654311
Q ss_pred CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HCCHHHHHHHHHHCCCC-CEEEEEECCCHHHH
Q ss_conf 94899998798401012357532100234555532100110000100-00000122345442872-02578721101043
Q gi|254780941|r 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILNKIDCVKPE 146 (311)
Q Consensus 69 ~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~-~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~ 146 (311)
T Consensus 82 ~r~~tiiD~PG--------H~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~~ 153 (203)
T cd01888 82 VRHVSFVDCPG--------HEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred EEEEEEEECCC--------HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 24799986898--------7999999997664347668986436677507799999999984998636775077778867
Q ss_pred HHHHHHHHHHHCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4578888641001-----23343110001387426789999983662
Q gi|254780941|r 147 RLLEQAEIANKLV-----FIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 147 ~l~~~~~~~~~~~-----~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
T Consensus 154 ~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~ 200 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 89999999999855216899859991478897999999999867829