HHsearch alignment for GI: 254780941 and conserved domain: cd01888

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82  E-value=5.4e-20  Score=149.20  Aligned_cols=157  Identities=25%  Similarity=0.341  Sum_probs=106.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEE---------EECC------C------CCCEEEE-------EEEEE-------EEC
Q ss_conf             8998338998688999998689202---------1058------8------8860212-------78999-------739
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVS---------IVTH------K------VQTTRSI-------VRGIV-------SEK   68 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vs---------ivS~------k------~~TTr~~-------i~gi~-------~~~   68 (311)
T Consensus         2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf             69999885787999999970851244078886776031114566665111212231011110124421453145654311


Q ss_pred             CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HCCHHHHHHHHHHCCCC-CEEEEEECCCHHHH
Q ss_conf             94899998798401012357532100234555532100110000100-00000122345442872-02578721101043
Q gi|254780941|r   69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILNKIDCVKPE  146 (311)
Q Consensus        69 ~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~-~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~  146 (311)
T Consensus        82 ~r~~tiiD~PG--------H~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~~  153 (203)
T cd01888          82 VRHVSFVDCPG--------HEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             EEEEEEEECCC--------HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf             24799986898--------7999999997664347668986436677507799999999984998636775077778867


Q ss_pred             HHHHHHHHHHHCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             4578888641001-----23343110001387426789999983662
Q gi|254780941|r  147 RLLEQAEIANKLV-----FIEKTFMVSATKGHGCDDVLNYLCSTLPL  188 (311)
Q Consensus       147 ~l~~~~~~~~~~~-----~~~~i~~ISAk~g~Gid~L~~~L~~~lpe  188 (311)
T Consensus       154 ~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~  200 (203)
T cd01888         154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             89999999999855216899859991478897999999999867829