HHsearch alignment for GI: 254780941 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=4.6e-20 Score=149.65 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=113.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEC---------C------CCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 8998338998688999998689202105---------8------888602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVT---------H------KVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS---------~------k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH-------- 75 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH-------- 75 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC--------
T ss_conf 899990689879999999999748763046521686147588887287633458999989988999989984--------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHHHHCCCC-----
Q ss_conf 532100234555532100110000100000001223454428720257872110104--3457888864100123-----
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP--ERLLEQAEIANKLVFI----- 161 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~--~~l~~~~~~~~~~~~~----- 161 (311)
T Consensus 76 ~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~ 155 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77777898776434467898653789758999999999872997499885645898889999999999998639993335
Q ss_pred -CCCCCCCCCCC----------CCHHHHHHHHHHHCCC
Q ss_conf -34311000138----------7426789999983662
Q gi|254780941|r 162 -EKTFMVSATKG----------HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 162 -~~i~~ISAk~g----------~Gid~L~~~L~~~lpe 188 (311)
T Consensus 156 ~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~ 193 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 88578725655335778865646599999999965889