HHsearch alignment for GI: 254780941 and conserved domain: cd01895
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=1.7e-37 Score=262.38 Aligned_cols=162 Identities=24% Similarity=0.352 Sum_probs=135.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012---357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~~~~l~ 100 (311)
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~ 83 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIE 83 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899998999999983898444349999157332899999998899985788421344210688999999999998
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH--HHHHHHHHHHC---CCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000000122345442872025787211010434--57888864100---12334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKL---VFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~--l~~~~~~~~~~---~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 84 ~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g~Gi 163 (174)
T cd01895 84 RADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGV 163 (174)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCH
T ss_conf 42865899758989988999999999985998699985675267647789999999998734168992899974479899
Q ss_pred HHHHHHHHHH
Q ss_conf 6789999983
Q gi|254780941|r 176 DDVLNYLCST 185 (311)
Q Consensus 176 d~L~~~L~~~ 185 (311)
T Consensus 164 ~~L~~~I~ei 173 (174)
T cd01895 164 DKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986