HHsearch alignment for GI: 254780941 and conserved domain: cd01897
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=100.00 E-value=5.1e-35 Score=246.42 Aligned_cols=159 Identities=28% Similarity=0.376 Sum_probs=123.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHH-CCCCCCCCCCHHHHHHHH-
Q ss_conf 899833899868899999868920210588886021278999739948999987984010-123575321002345555-
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA-KDSYHKLMIRLSWSTIKH- 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~-~~~l~~~~~~~~~~~l~~- 101 (311)
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~-v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~-ie~~~~~~l~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNT-IEMQAITALAHL 79 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHH-HHHHHHHHHHHC
T ss_conf 7999889998899999999589860-23758723574368999837276872488655674788889-999999999835
Q ss_pred HHHHCCCCHHHHHHH---CCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 321001100001000---000012234544--287202578721101043457888864100123343110001387426
Q gi|254780941|r 102 ADIVCLVVDSHRELK---VNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 102 aDiil~VvDa~~~~~---~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
T Consensus 80 ~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~~~~~~~-~-~~~~vi~ISA~~g~Gi~ 157 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEE-L-EGEEVLKISTLTEEGVD 157 (168)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH-C-CCCCEEEEECCCCCCHH
T ss_conf 776899996887678489999999998776525888799994753458100799999997-0-89988999815896999
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
T Consensus 158 ~L~~~i~ell 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHC
T ss_conf 9999999963