HHsearch alignment for GI: 254780941 and conserved domain: cd01898

>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=100.00  E-value=1.4e-35  Score=250.15  Aligned_cols=161  Identities=28%  Similarity=0.329  Sum_probs=127.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             89983389986889999986892021058888602127899973-99489999879840101235753210023455553
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE-KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA  102 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~-~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a  102 (311)
T Consensus         2 ~VAiiG~pNvGKSTLlN~l~~~~~~-V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~-~~~l~~~~l~~i~~a   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE-GKGLGHRFLRHIERT   79 (170)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCC-CCCHHHHHHHCCCCC
T ss_conf             5899899999899999999678760-32566652374477999369856999648864445546-622489998613345


Q ss_pred             HHHCCCCHHHHHHHC--CHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             210011000010000--00012234544-----28720257872110104345788886410012334311000138742
Q gi|254780941|r  103 DIVCLVVDSHRELKV--NIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC  175 (311)
Q Consensus       103 Diil~VvDa~~~~~~--~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gi  175 (311)
T Consensus        80 dvil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi  159 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf             61799998998789899999999999982744403865067762024283563899999998569995899975479799


Q ss_pred             HHHHHHHHHHC
Q ss_conf             67899999836
Q gi|254780941|r  176 DDVLNYLCSTL  186 (311)
Q Consensus       176 d~L~~~L~~~l  186 (311)
T Consensus       160 ~~L~~~I~~~L  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999669