HHsearch alignment for GI: 254780941 and conserved domain: cd01898
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=100.00 E-value=1.4e-35 Score=250.15 Aligned_cols=161 Identities=28% Similarity=0.329 Sum_probs=127.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973-99489999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE-KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~-~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~~-V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~-~~~l~~~~l~~i~~a 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE-GKGLGHRFLRHIERT 79 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCC-CCCHHHHHHHCCCCC
T ss_conf 5899899999899999999678760-32566652374477999369856999648864445546-622489998613345
Q ss_pred HHHCCCCHHHHHHHC--CHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 210011000010000--00012234544-----28720257872110104345788886410012334311000138742
Q gi|254780941|r 103 DIVCLVVDSHRELKV--NIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 103 Diil~VvDa~~~~~~--~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 80 dvil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 61799998998789899999999999982744403865067762024283563899999998569995899975479799
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
T Consensus 160 ~~L~~~I~~~L 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999669