HHsearch alignment for GI: 254780941 and conserved domain: cd01900
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.61 E-value=1.9e-15 Score=119.74 Aligned_cols=87 Identities=26% Similarity=0.308 Sum_probs=71.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE-----------------EEEEEECCCCHHHCCCC
Q ss_conf 9983389986889999986892021058888602127899973994-----------------89999879840101235
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-----------------QIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~-----------------qiifvDTPG~~~~~~~l 87 (311)
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~-~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC-
T ss_conf 95647899988999999977998-7458997772680589967756588998731776512357899854655677523-
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 75321002345555321001100001
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHR 113 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~ 113 (311)
T Consensus 79 GeGLGN~FL~~Ir~vDai~hVVR~F~ 104 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCCCCHHHHHHHHHCCEEEEEHHHCC
T ss_conf 67650899999873463465321115