HHsearch alignment for GI: 254780941 and conserved domain: cd03110

>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.41  E-value=0.0014  Score=42.99  Aligned_cols=109  Identities=18%  Similarity=0.308  Sum_probs=67.5

Q ss_pred             EEEE-CCCCCCHHHHHHHH--HCCCEEEECCCCC-------------CEEEEEEE-------------------------
Q ss_conf             9983-38998688999998--6892021058888-------------60212789-------------------------
Q gi|254780941|r   25 VALV-GATNAGKSTLVNRF--VGAKVSIVTHKVQ-------------TTRSIVRG-------------------------   63 (311)
Q Consensus        25 Vaiv-G~pN~GKSTL~N~l--~g~~vsivS~k~~-------------TTr~~i~g-------------------------   63 (311)
T Consensus         2 IaV~SgKGGVGKTT~a~nLA~~l~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (179)
T cd03110           2 IAVISGKGGTGKTTVTAALAALLKNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVTEVR   81 (179)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHHHHH
T ss_conf             89995899860999999999974287199941899857777187656321223046533515066532351768899999


Q ss_pred             -----EEEECCEEEEEEECC-CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf             -----997399489999879-84010123575321002345555321001100001000000012234544287202578
Q gi|254780941|r   64 -----IVSEKESQIVFLDTP-GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL  137 (311)
Q Consensus        64 -----i~~~~~~qiifvDTP-G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVl  137 (311)
T Consensus        82 ~~~~~~~~~~~~D~viiD~Ppg~~-----------~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~  150 (179)
T cd03110          82 KHAKEIAKAEGAELIIIDGPPGIG-----------CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVI  150 (179)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCC-----------HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999998644379989981899975-----------789999973994999819947899999999999998299789999


Q ss_pred             EECCCHH
Q ss_conf             7211010
Q gi|254780941|r  138 NKIDCVK  144 (311)
Q Consensus       138 NKiDlv~  144 (311)
T Consensus       151 Nr~~~~~  157 (179)
T cd03110         151 NKYDLND  157 (179)
T ss_pred             ECCCCCC
T ss_conf             6887887