HHsearch alignment for GI: 254780941 and conserved domain: cd03110
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.41 E-value=0.0014 Score=42.99 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=67.5
Q ss_pred EEEE-CCCCCCHHHHHHHH--HCCCEEEECCCCC-------------CEEEEEEE-------------------------
Q ss_conf 9983-38998688999998--6892021058888-------------60212789-------------------------
Q gi|254780941|r 25 VALV-GATNAGKSTLVNRF--VGAKVSIVTHKVQ-------------TTRSIVRG------------------------- 63 (311)
Q Consensus 25 Vaiv-G~pN~GKSTL~N~l--~g~~vsivS~k~~-------------TTr~~i~g------------------------- 63 (311)
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALLKNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVTEVR 81 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHHHHH
T ss_conf 89995899860999999999974287199941899857777187656321223046533515066532351768899999
Q ss_pred -----EEEECCEEEEEEECC-CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf -----997399489999879-84010123575321002345555321001100001000000012234544287202578
Q gi|254780941|r 64 -----IVSEKESQIVFLDTP-GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 (311)
Q Consensus 64 -----i~~~~~~qiifvDTP-G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVl 137 (311)
T Consensus 82 ~~~~~~~~~~~~D~viiD~Ppg~~-----------~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~ 150 (179)
T cd03110 82 KHAKEIAKAEGAELIIIDGPPGIG-----------CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVI 150 (179)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCC-----------HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999998644379989981899975-----------789999973994999819947899999999999998299789999
Q ss_pred EECCCHH
Q ss_conf 7211010
Q gi|254780941|r 138 NKIDCVK 144 (311)
Q Consensus 138 NKiDlv~ 144 (311)
T Consensus 151 Nr~~~~~ 157 (179)
T cd03110 151 NKYDLND 157 (179)
T ss_pred ECCCCCC
T ss_conf 6887887