HHsearch alignment for GI: 254780941 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0011 Score=43.80 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 218998338998688999998689
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~ 45 (311)
T Consensus 24 Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995599999999769