HHsearch alignment for GI: 254780941 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=2.5e-15 Score=119.06 Aligned_cols=154 Identities=20% Similarity=0.268 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEE--C-CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 89983389986889999986892021058888602-127899973--9-9489999879840101235753210023455
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSE--K-ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~--~-~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
T Consensus 2 KivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~--------e~~~~l~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ--------ELYSDMVSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC--------CCHHHHHHHHH
T ss_conf 9999995995889999999978886688888864578899999978997999999979998--------40067899997
Q ss_pred HHHHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 553210011000010000-00012234544--28720257872110104345-788886410012334311000138742
Q gi|254780941|r 100 KHADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 74 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~g~nV 152 (164)
T cd04101 74 ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRGVGY 152 (164)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 642689999707746689999999999997668986899987224452455699999999998899-8999866889098
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
T Consensus 153 ~e~F~~lar~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986