HHsearch alignment for GI: 254780941 and conserved domain: cd04114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1e-15 Score=121.52 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=98.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 18998338998688999998689202105888860-21278999739--9489999879840101235753210023455
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
T Consensus 8 ~KivllGd~~VGKTsli~r~~~~~f~~~-~~~-Tig~d~~~k~i~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~ 77 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGA-TIGVDFMIKTVEIKGEKIKLQIWDTAGQE--------RFRSITQSYY 77 (169)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCC-CCC-CCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHH
T ss_conf 8999999899799999999985989998-677-41247899999999999999999899984--------4451557774
Q ss_pred HHHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5532100110000100000-001223454---428720257872110104345-78888641001233431100013874
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
T Consensus 78 ~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~n 156 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAKESDN 156 (169)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 2366459981489888999999999999986898863897311343454178899999999998899-999986898808
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
T Consensus 157 V~e~F~~la~~l 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999987