HHsearch alignment for GI: 254780941 and conserved domain: cd04116
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=1e-15 Score=121.59 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=96.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-1278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 7 KivvlGd~~VGKTsli~r~~~~~f~--~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~~ 76 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFD--TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE--------RFRSLRTPFYR 76 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHEE
T ss_conf 9999999997899999999739899--9888876079899999999999999999899972--------43524176600
Q ss_pred HHHHHCCCCHHHHHHHCCHH-HHHHHHH-------HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000000-1223454-------428720257872110104345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIH-DLLKEIA-------KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~-~il~~l~-------~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 77 ~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v~~~e~~~~a~~~~~~~~~E~SAk~g 156 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDA 156 (170)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 47733999978887999999999999999714457888409999611113037889999999999859978999888888
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7426789999983
Q gi|254780941|r 173 HGCDDVLNYLCST 185 (311)
Q Consensus 173 ~Gid~L~~~L~~~ 185 (311)
T Consensus 157 ~nV~~~F~~l~~~ 169 (170)
T cd04116 157 TNVAAAFEEAVRR 169 (170)
T ss_pred CCHHHHHHHHHHC
T ss_conf 1889999999953