HHsearch alignment for GI: 254780941 and conserved domain: cd04120

>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65  E-value=2e-15  Score=119.66  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=99.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf             89983389986889999986892021058888602-127899973--994899998798401012357532100234555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK  100 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~  100 (311)
T Consensus         2 KIvllGd~gVGKTsLi~rf~~~~F~--~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGq--------e~f~sl~~~yyr   71 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ--------ERFNSITSAYYR   71 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCCCCCHHHHHH
T ss_conf             8999997997299999999549999--987997646889999999999999999979886--------124523578876


Q ss_pred             HHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             532100110000100000-001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r  101 HADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC  175 (311)
Q Consensus       101 ~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi  175 (311)
T Consensus        72 ~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~Vs~~e~~~~A~~~~~~~f~EtSAkt~~nV  151 (202)
T cd04120          72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV  151 (202)
T ss_pred             HHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf             41445899856888999999999999997466887189876536505317879999999998279988999258999698


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             67899999836622
Q gi|254780941|r  176 DDVLNYLCSTLPLA  189 (311)
Q Consensus       176 d~L~~~L~~~lpe~  189 (311)
T Consensus       152 ~e~F~~l~~~i~~~  165 (202)
T cd04120         152 DEIFLKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999985