HHsearch alignment for GI: 254780941 and conserved domain: cd04124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.67 E-value=9.4e-16 Score=121.78 Aligned_cols=151 Identities=21% Similarity=0.177 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEE-CCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 899833899868899999868920210-5888860212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIV-THKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsiv-S~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 KivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~--~~~~~~~~~~l~iwDtaG~--------e~f~~~~~~y~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKH--NAKFEGKTILVDFWDTAGQ--------ERFQTMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEE--EEEECCEEEEEEEEECCCC--------CCCCHHHHHHHC
T ss_conf 899999899678999999980977997266541579999--9999999999999979998--------434324699735
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 53210011000010000-00012234544--2872025787211010434578888641001233431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
T Consensus 72 ~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~--~~~~~~~~a~~~~-~~f~etSAk~g~nV~e 148 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--VTQKKFNFAEKHN-LPLYYVSAADGTNVVK 148 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH--HHHHHHHHHHHCC-CEEEEEECCCCCCHHH
T ss_conf 687679999689778899999999999986869989999997117742--5899999999869-9199990783809799
Q ss_pred HHHHHHHHCC
Q ss_conf 8999998366
Q gi|254780941|r 178 VLNYLCSTLP 187 (311)
Q Consensus 178 L~~~L~~~lp 187 (311)
T Consensus 149 ~F~~l~~~~i 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998