HHsearch alignment for GI: 254780941 and conserved domain: cd04130
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=4.8e-14 Score=110.73 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~~F~--~~y~pT~~~~~~~~i~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~~~ 71 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD--------EFDKLRPLCYPD 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHCC
T ss_conf 8999998997889999999619999--985783589999999999999999999899873--------443456766137
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i 164 (311)
T Consensus 72 a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~y 151 (173)
T cd04130 72 TDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY 151 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899999659878899999999999996098998899988701100133554443325755789999999998499689
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q ss_conf 1100013874267899999
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~ 183 (311)
T Consensus 152 ~EtSAkt~~nV~e~Fe~~i 170 (173)
T cd04130 152 IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEECCCCCCCHHHHHHHHH
T ss_conf 9968688969799999998