HHsearch alignment for GI: 254780941 and conserved domain: cd04135

>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.57  E-value=5.5e-14  Score=110.35  Aligned_cols=152  Identities=16%  Similarity=0.093  Sum_probs=95.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         2 Kiv~vGd~~VGKTsli~rf~~~~f~-~~y~p-Ti~~~~~~~i~v~~~~~~l~i~DTaG~e--------~~~~~~~~~~~~   71 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQE--------DYDRLRPLSYPM   71 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-EEEEEEEEEEEECCEEEEEEEEECCCCC--------CCHHHHHHHHCC
T ss_conf             8999998998599999999629899-88688-5752022799999999999999797640--------315565998557


Q ss_pred             HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf             3210011000010000000--12234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r  102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT  164 (311)
Q Consensus       102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i  164 (311)
T Consensus        72 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~~f  151 (174)
T cd04135          72 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY  151 (174)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             87678984379778899999999999998684998899968523004434554530045766399999999997799899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             110001387426789999983
Q gi|254780941|r  165 FMVSATKGHGCDDVLNYLCST  185 (311)
Q Consensus       165 ~~ISAk~g~Gid~L~~~L~~~  185 (311)
T Consensus       152 ~E~SAkt~~nV~e~F~~~i~~  172 (174)
T cd04135         152 VECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             EEECCCCCCCHHHHHHHHHHH
T ss_conf             990548794989999999999