HHsearch alignment for GI: 254780941 and conserved domain: cd04135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.57 E-value=5.5e-14 Score=110.35 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 2 Kiv~vGd~~VGKTsli~rf~~~~f~-~~y~p-Ti~~~~~~~i~v~~~~~~l~i~DTaG~e--------~~~~~~~~~~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQE--------DYDRLRPLSYPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-EEEEEEEEEEEECCEEEEEEEEECCCCC--------CCHHHHHHHHCC
T ss_conf 8999998998599999999629899-88688-5752022799999999999999797640--------315565998557
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i 164 (311)
T Consensus 72 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~~f 151 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY 151 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87678984379778899999999999998684998899968523004434554530045766399999999997799899
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 110001387426789999983
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 152 ~E~SAkt~~nV~e~F~~~i~~ 172 (174)
T cd04135 152 VECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEECCCCCCCHHHHHHHHHHH
T ss_conf 990548794989999999999