HHsearch alignment for GI: 254780941 and conserved domain: cd04146

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.58  E-value=2.5e-14  Score=112.53  Aligned_cols=153  Identities=27%  Similarity=0.309  Sum_probs=95.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r   25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA  102 (311)
Q Consensus        25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a  102 (311)
T Consensus         2 iv~vGd~~VGKTsli~rf~~~~f~--~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~----~---~~~~~~~~~a   72 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD----T---EQLERSIRWA   72 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCC----H---HHHHHHCCCC
T ss_conf             999998997789999999749899--875995563057999999999999999289850122----0---1255430458


Q ss_pred             HHHCCCCHHHHHHHCC-HHHHHHHHH-----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCC-CC
Q ss_conf             2100110000100000-001223454-----428720257872110104345-788886410012334311000138-74
Q gi|254780941|r  103 DIVCLVVDSHRELKVN-IHDLLKEIA-----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKG-HG  174 (311)
Q Consensus       103 Diil~VvDa~~~~~~~-~~~il~~l~-----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g-~G  174 (311)
T Consensus        73 ~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~a~~~~~-~f~E~SAk~~~~~  151 (165)
T cd04146          73 DGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAAEDYDG  151 (165)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCC
T ss_conf             789999865888999999999999999846699953998445545210367799999999998199-8999752087826


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             2678999998366
Q gi|254780941|r  175 CDDVLNYLCSTLP  187 (311)
Q Consensus       175 id~L~~~L~~~lp  187 (311)
T Consensus       152 V~~~F~~l~~~i~  164 (165)
T cd04146         152 VHSVFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999966