HHsearch alignment for GI: 254780941 and conserved domain: cd04149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.75 E-value=1.8e-17 Score=132.97 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=98.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012357532100234555
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 8 k~~kililG~~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gq--------e~~r~l~~~y~~ 75 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGGQ--------DKIRPLWRHYYT 75 (168)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCC--------CCCCCHHHHHCC
T ss_conf 88899999999999899999996699876026267----007999989889999989999--------746606576437
Q ss_pred HHHHHCCCCHHHHHHHC-C----HHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-0----00122345442872025787211010---4345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-N----IHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~----~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 76 ~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG 155 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCC
T ss_conf 88668999837767899999999999971452279869999975667778899999999787655179809998068789
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7426789999983
Q gi|254780941|r 173 HGCDDVLNYLCST 185 (311)
Q Consensus 173 ~Gid~L~~~L~~~ 185 (311)
T Consensus 156 ~Gv~e~f~WL~~~ 168 (168)
T cd04149 156 DGLYEGLTWLSSN 168 (168)
T ss_pred CCHHHHHHHHHCC
T ss_conf 6979999998659