HHsearch alignment for GI: 254780941 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.75 E-value=1.6e-17 Score=133.26 Aligned_cols=148 Identities=24% Similarity=0.228 Sum_probs=96.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~~~~~pTig~~---~~~~~~~~~~~l~iwD~~G~--------e~~~~~~~~y~~~a~~ 70 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQ--------EKMRTVWKCYLENTDG 70 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE---EEEEEECCEEEEEEEECCCC--------CCCCHHHHHHHCCCCE
T ss_conf 999999999999999999569877757761503---89999899899999978986--------2474158877456778
Q ss_pred HCCCCHHHHHHHC-CHHHHH----HHHHHCCCCCEEEEEECCCHHH---HHHHHH--HHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0011000010000-000122----3454428720257872110104---345788--88641001233431100013874
Q gi|254780941|r 105 VCLVVDSHRELKV-NIHDLL----KEIAKRSSRLILILNKIDCVKP---ERLLEQ--AEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 105 il~VvDa~~~~~~-~~~~il----~~l~~~~~p~IiVlNKiDlv~~---~~l~~~--~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
T Consensus 71 iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~-~~i~~~SAktGeg 149 (160)
T cd04156 71 LVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRD-WYVQPCSAVTGEG 149 (160)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCC
T ss_conf 999985686788787999999998663537874999998633656679999999986999985399-9999866884959
Q ss_pred HHHHHHHHHH
Q ss_conf 2678999998
Q gi|254780941|r 175 CDDVLNYLCS 184 (311)
Q Consensus 175 id~L~~~L~~ 184 (311)
T Consensus 150 i~e~f~~la~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHC
T ss_conf 9999999857