HHsearch alignment for GI: 254780941 and conserved domain: cd04158

>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.74  E-value=3.1e-17  Score=131.38  Aligned_cols=154  Identities=22%  Similarity=0.203  Sum_probs=103.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r   25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI  104 (311)
Q Consensus        25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi  104 (311)
T Consensus         2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~----~i~~~~~~l~iwD~gG~--------~~~r~~w~~Yy~~~~~   69 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE----TVEYKNLKFTIWDVGGK--------HKLRPLWKHYYLNTQA   69 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEECCEEEEEEECCCC--------CCCCHHHHHHCCCCCE
T ss_conf             99999899988999999957996897786881669----99989889999989997--------2446367875557627


Q ss_pred             HCCCCHHHHHHHCC-----HHHHHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHH-CCCCCCCCCCCCCCCCCH
Q ss_conf             00110000100000-----001223454428720257872110104---345788886410-012334311000138742
Q gi|254780941|r  105 VCLVVDSHRELKVN-----IHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANK-LVFIEKTFMVSATKGHGC  175 (311)
Q Consensus       105 il~VvDa~~~~~~~-----~~~il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~-~~~~~~i~~ISAk~g~Gi  175 (311)
T Consensus        70 iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~Gi  149 (169)
T cd04158          70 VVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL  149 (169)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCCCH
T ss_conf             99999863067799999999999712753798499997355677798999999985705452699629995557279598


Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             678999998366223
Q gi|254780941|r  176 DDVLNYLCSTLPLAP  190 (311)
Q Consensus       176 d~L~~~L~~~lpe~~  190 (311)
T Consensus       150 ~e~~~WL~~~ii~~~  164 (169)
T cd04158         150 YEGLDWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999998657