HHsearch alignment for GI: 254780941 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.74 E-value=3.1e-17 Score=131.38 Aligned_cols=154 Identities=22% Similarity=0.203 Sum_probs=103.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~----~i~~~~~~l~iwD~gG~--------~~~r~~w~~Yy~~~~~ 69 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE----TVEYKNLKFTIWDVGGK--------HKLRPLWKHYYLNTQA 69 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEECCEEEEEEECCCC--------CCCCHHHHHHCCCCCE
T ss_conf 99999899988999999957996897786881669----99989889999989997--------2446367875557627
Q ss_pred HCCCCHHHHHHHCC-----HHHHHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHH-CCCCCCCCCCCCCCCCCH
Q ss_conf 00110000100000-----001223454428720257872110104---345788886410-012334311000138742
Q gi|254780941|r 105 VCLVVDSHRELKVN-----IHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANK-LVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 105 il~VvDa~~~~~~~-----~~~il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~-~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 70 iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~Gi 149 (169)
T cd04158 70 VVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCCCH
T ss_conf 99999863067799999999999712753798499997355677798999999985705452699629995557279598
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 678999998366223
Q gi|254780941|r 176 DDVLNYLCSTLPLAP 190 (311)
Q Consensus 176 d~L~~~L~~~lpe~~ 190 (311)
T Consensus 150 ~e~~~WL~~~ii~~~ 164 (169)
T cd04158 150 YEGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998657