HHsearch alignment for GI: 254780941 and conserved domain: cd04160

>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79  E-value=5.6e-19  Score=142.63  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=97.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCEEE---ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             9983389986889999986892021---0588886021278999739948999987984010123575321002345555
Q gi|254780941|r   25 VALVGATNAGKSTLVNRFVGAKVSI---VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        25 VaivG~pN~GKSTL~N~l~g~~vsi---vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe--------~~~~l~~~y~~~   73 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--------SLRSLWDKYYAE   73 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCH--------HHHHHHHHHCCC
T ss_conf             999999998888999988750367677765540353132689999899999999689878--------887899874289


Q ss_pred             HHHHCCCCHHHHHHHCC-HHHHHHHH----HHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCC--CCCCCCCCCCC
Q ss_conf             32100110000100000-00122345----4428720257872110104---345788886410012--33431100013
Q gi|254780941|r  102 ADIVCLVVDSHRELKVN-IHDLLKEI----AKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVF--IEKTFMVSATK  171 (311)
Q Consensus       102 aDiil~VvDa~~~~~~~-~~~il~~l----~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~--~~~i~~ISAk~  171 (311)
T Consensus        74 a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAkt  153 (167)
T cd04160          74 CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             87899998668678899999999997511024896299997066766577899999999999998546998999988782


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             87426789999983
Q gi|254780941|r  172 GHGCDDVLNYLCST  185 (311)
Q Consensus       172 g~Gid~L~~~L~~~  185 (311)
T Consensus       154 G~Gv~e~f~wL~~k  167 (167)
T cd04160         154 GTGVREGIEWLVER  167 (167)
T ss_pred             CCCHHHHHHHHHCC
T ss_conf             94989999999659