HHsearch alignment for GI: 254780941 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=5.6e-19 Score=142.63 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=97.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEE---ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9983389986889999986892021---0588886021278999739948999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSI---VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsi---vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe--------~~~~l~~~y~~~ 73 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--------SLRSLWDKYYAE 73 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCH--------HHHHHHHHHCCC
T ss_conf 999999998888999988750367677765540353132689999899999999689878--------887899874289
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHH----HHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCC--CCCCCCCCCCC
Q ss_conf 32100110000100000-00122345----4428720257872110104---345788886410012--33431100013
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEI----AKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVF--IEKTFMVSATK 171 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l----~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~--~~~i~~ISAk~ 171 (311)
T Consensus 74 a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAkt 153 (167)
T cd04160 74 CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 87899998668678899999999997511024896299997066766577899999999999998546998999988782
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 87426789999983
Q gi|254780941|r 172 GHGCDDVLNYLCST 185 (311)
Q Consensus 172 g~Gid~L~~~L~~~ 185 (311)
T Consensus 154 G~Gv~e~f~wL~~k 167 (167)
T cd04160 154 GTGVREGIEWLVER 167 (167)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 94989999999659