HHsearch alignment for GI: 254780941 and conserved domain: cd04175
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.61 E-value=1.2e-14 Score=114.67 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 4 IvllGd~~VGKTsli~r~~~~~f~--~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~--------~~~l~~~y~~~a 73 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLYMKNG 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEECCCCCCHH--------HHHHHHHHHCCC
T ss_conf 999899997599999999709288--6568840468999999999999998514775432--------456788873578
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
T Consensus 74 ~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~~a~~~~~-~~~E~SAk~~~nV~ 152 (164)
T cd04175 74 QGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAKAKINVN 152 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 68999960787778999999999999862899963998521457222068999999999998599-99996689881789
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
T Consensus 153 ~~F~~l~~~i 162 (164)
T cd04175 153 EIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986