HHsearch alignment for GI: 254780941 and conserved domain: cd04176

>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60  E-value=1.1e-14  Score=114.89  Aligned_cols=151  Identities=18%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r   25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA  102 (311)
Q Consensus        25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a  102 (311)
T Consensus         4 ivllGd~~VGKTsli~r~~~~~f~~-~y~p-Ti~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~~a   73 (163)
T cd04176           4 VVVLGSGGVGKSALTVQFVSGTFIE-KYDP-TIEDFYRKEIEVDSSPSVLEILDTAGTE--------QFASMRDLYIKNG   73 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCCEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHCCC
T ss_conf             9998999978999999997098997-5588-5233167999988899999999898854--------2567889985578


Q ss_pred             HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r  103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD  176 (311)
Q Consensus       103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid  176 (311)
T Consensus        74 ~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV~  152 (163)
T cd04176          74 QGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVN  152 (163)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf             65689712798899999999999999973899963999743134001276999999999998599-89998568781779


Q ss_pred             HHHHHHHHHC
Q ss_conf             7899999836
Q gi|254780941|r  177 DVLNYLCSTL  186 (311)
Q Consensus       177 ~L~~~L~~~l  186 (311)
T Consensus       153 ~~F~~l~~~i  162 (163)
T cd04176         153 ELFAEIVRQM  162 (163)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999953