HHsearch alignment for GI: 254780941 and conserved domain: cd04176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=1.1e-14 Score=114.89 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=97.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~-~y~p-Ti~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~~a 73 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFIE-KYDP-TIEDFYRKEIEVDSSPSVLEILDTAGTE--------QFASMRDLYIKNG 73 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCCEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHCCC
T ss_conf 9998999978999999997098997-5588-5233167999988899999999898854--------2567889985578
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
T Consensus 74 ~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV~ 152 (163)
T cd04176 74 QGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVN 152 (163)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 65689712798899999999999999973899963999743134001276999999999998599-89998568781779
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
T Consensus 153 ~~F~~l~~~i 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHH
T ss_conf 9999999953