HHsearch alignment for GI: 254780941 and conserved domain: cd04177
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.67 E-value=1.1e-15 Score=121.29 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=96.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 4 ivlvGd~~VGKTsli~rf~~~~f~-~~y~p-Ti~~~~~k~i~i~~~~~~l~iwDtaG~e~--------~~~~~~~~~~~a 73 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVFI-ESYDP-TIEDSYRKQVEIDGRQCDLEILDTAGTEQ--------FTAMRELYIKSG 73 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CCCCEEEEEEEECCEEEEEEEEECCCCCC--------CCCCHHHHHCCC
T ss_conf 999899997799999999619389-86588-33315999999999999999982788623--------334515451268
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
T Consensus 74 ~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~~e~~~~a~~~~~~~~~E~SAk~~~nV~ 153 (168)
T cd04177 74 QGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 66798536898889999999999999851788874898873146121376899999999997499779996248784689
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
T Consensus 154 e~F~~l~~~i 163 (168)
T cd04177 154 EVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999