Query gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs 254 out of 10249
Neff 7.6
Searched_HMMs 39220
Date Mon May 30 04:13:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780941.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 0 0 690.7 26.6 293 18-310 2-295 (298)
2 PRK00089 era GTP-binding prote 100.0 0 0 684.6 28.5 296 15-310 1-296 (296)
3 KOG1423 consensus 100.0 0 0 484.5 22.3 279 17-295 67-379 (379)
4 TIGR00436 era GTP-binding prot 100.0 0 0 317.7 16.0 271 23-293 1-278 (278)
5 cd04163 Era Era subfamily. Er 100.0 4.2E-43 0 298.7 12.6 167 20-186 1-168 (168)
6 cd01894 EngA1 EngA1 subfamily. 100.0 4.2E-40 1.1E-44 279.3 11.4 157 26-186 1-157 (157)
7 TIGR03594 GTPase_EngA ribosome 100.0 1.6E-39 4.1E-44 275.6 12.8 205 24-234 1-214 (429)
8 PRK03003 engA GTP-binding prot 100.0 1.9E-39 4.8E-44 275.1 13.0 168 22-193 38-205 (474)
9 PRK00093 engA GTP-binding prot 100.0 4.7E-39 1.2E-43 272.5 12.3 163 24-190 3-166 (438)
10 pfam02421 FeoB_N Ferrous iron 100.0 1.8E-38 4.7E-43 268.7 13.1 181 24-210 1-182 (188)
11 PRK09518 bifunctional cytidyla 100.0 1.2E-37 3.1E-42 263.4 12.4 165 23-191 280-444 (714)
12 cd01895 EngA2 EngA2 subfamily. 100.0 1.7E-37 4.5E-42 262.4 12.6 162 24-185 4-173 (174)
13 COG1160 Predicted GTPases [Gen 100.0 1.2E-37 3E-42 263.5 11.2 161 23-187 4-165 (444)
14 cd04164 trmE TrmE (MnmE, ThdF, 100.0 3.1E-37 7.9E-42 260.8 10.3 154 24-186 3-156 (157)
15 TIGR03594 GTPase_EngA ribosome 100.0 1.2E-36 3E-41 257.0 10.9 171 19-189 169-346 (429)
16 PRK00454 engB GTPase EngB; Rev 100.0 1.5E-36 3.8E-41 256.4 10.3 161 23-187 25-196 (196)
17 PRK00093 engA GTP-binding prot 100.0 2.4E-36 6.1E-41 255.0 10.9 174 21-194 171-352 (438)
18 PRK09518 bifunctional cytidyla 100.0 7.6E-36 1.9E-40 251.8 12.8 251 24-297 454-712 (714)
19 cd01898 Obg Obg subfamily. Th 100.0 1.4E-35 3.5E-40 250.2 11.7 161 24-186 2-170 (170)
20 cd00880 Era_like Era (E. coli 100.0 1.8E-35 4.6E-40 249.4 11.2 159 27-186 1-163 (163)
21 PRK03003 engA GTP-binding prot 100.0 6.1E-35 1.5E-39 245.9 12.5 251 23-296 212-470 (474)
22 cd01897 NOG NOG1 is a nucleola 100.0 5.1E-35 1.3E-39 246.4 11.0 159 24-186 2-167 (168)
23 cd01879 FeoB Ferrous iron tran 100.0 5.4E-35 1.4E-39 246.3 11.1 156 27-187 1-157 (158)
24 cd01876 YihA_EngB The YihA (En 100.0 6.7E-35 1.7E-39 245.7 11.4 159 25-186 2-170 (170)
25 PRK04213 GTP-binding protein; 100.0 6.1E-35 1.5E-39 245.9 9.9 160 25-190 4-187 (195)
26 PRK05291 trmE tRNA modificatio 100.0 3.2E-34 8.2E-39 241.3 13.0 157 19-189 212-369 (445)
27 pfam10662 PduV-EutP Ethanolami 100.0 1.5E-34 3.8E-39 243.4 8.7 140 25-184 4-143 (143)
28 COG0486 ThdF Predicted GTPase 100.0 1.6E-33 4E-38 236.8 13.8 163 21-189 215-378 (454)
29 TIGR03598 GTPase_YsxC ribosome 100.0 6E-34 1.5E-38 239.5 8.7 149 24-176 20-179 (179)
30 cd01881 Obg_like The Obg-like 100.0 2.3E-33 5.9E-38 235.7 11.1 158 27-186 1-176 (176)
31 cd01878 HflX HflX subfamily. 100.0 3.6E-33 9.2E-38 234.5 10.5 160 20-186 37-204 (204)
32 COG1160 Predicted GTPases [Gen 100.0 8.7E-32 2.2E-36 225.5 13.9 167 20-186 176-350 (444)
33 cd01896 DRG The developmentall 100.0 2.1E-31 5.4E-36 223.0 12.2 155 24-187 2-226 (233)
34 pfam00009 GTP_EFTU Elongation 100.0 1.1E-30 2.8E-35 218.4 13.1 158 23-188 4-185 (185)
35 TIGR00450 thdF tRNA modificati 100.0 7.7E-30 2E-34 212.9 10.7 170 18-187 220-391 (473)
36 cd04171 SelB SelB subfamily. 100.0 1.3E-29 3.3E-34 211.4 10.9 153 24-184 2-163 (164)
37 cd00881 GTP_translation_factor 100.0 2.1E-28 5.4E-33 203.6 11.7 157 24-188 1-188 (189)
38 PRK12298 obgE GTPase ObgE; Rev 100.0 6.6E-28 1.7E-32 200.4 11.8 191 25-217 162-363 (380)
39 PRK12299 obgE GTPase ObgE; Rev 100.0 6.4E-28 1.6E-32 200.5 10.9 164 24-190 160-330 (334)
40 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 1.3E-27 3.4E-32 198.5 12.3 154 24-186 2-165 (168)
41 TIGR03156 GTP_HflX GTP-binding 100.0 6.1E-28 1.6E-32 200.6 9.9 156 21-186 186-351 (351)
42 TIGR00437 feoB ferrous iron tr 99.9 7.3E-28 1.9E-32 200.1 8.0 180 29-213 1-188 (733)
43 KOG1191 consensus 99.9 1.6E-27 4.2E-32 197.9 8.6 192 18-216 263-477 (531)
44 PRK11058 putative GTPase HflX; 99.9 9.8E-26 2.5E-30 186.4 12.7 203 21-248 194-406 (426)
45 PRK09554 feoB ferrous iron tra 99.9 7.7E-26 2E-30 187.0 11.9 157 23-186 4-167 (772)
46 PRK12296 obgE GTPase ObgE; Rev 99.9 1.2E-25 3.1E-30 185.8 11.7 164 24-190 161-343 (495)
47 PRK12297 obgE GTPase ObgE; Rev 99.9 1.2E-25 3.2E-30 185.7 11.7 164 24-191 160-333 (429)
48 COG0370 FeoB Fe2+ transport sy 99.9 2E-25 5.2E-30 184.3 12.7 167 24-197 5-178 (653)
49 COG0218 Predicted GTPase [Gene 99.9 1.6E-25 4.1E-30 185.0 10.1 182 3-188 6-198 (200)
50 KOG1489 consensus 99.9 2.7E-24 6.8E-29 177.1 9.7 159 24-186 198-366 (366)
51 COG2262 HflX GTPases [General 99.9 3E-24 7.5E-29 176.8 9.9 161 21-190 189-359 (411)
52 COG1163 DRG Predicted GTPase [ 99.9 1.2E-23 3E-28 173.0 12.9 156 21-186 60-288 (365)
53 COG0536 Obg Predicted GTPase [ 99.9 2.4E-23 6.2E-28 170.9 10.0 165 24-190 161-336 (369)
54 TIGR02729 Obg_CgtA GTP-binding 99.9 1.6E-23 4E-28 172.1 8.7 117 25-143 161-295 (296)
55 cd01890 LepA LepA subfamily. 99.9 1.1E-22 2.9E-27 166.6 12.5 156 24-188 2-178 (179)
56 pfam01926 MMR_HSR1 GTPase of u 99.9 1.3E-22 3.3E-27 166.2 6.8 106 34-139 1-106 (106)
57 PRK12312 infB translation init 99.9 1.7E-21 4.4E-26 158.9 11.1 158 19-186 114-278 (610)
58 COG1084 Predicted GTPase [Gene 99.9 5.3E-21 1.4E-25 155.7 11.3 164 23-189 169-338 (346)
59 cd04154 Arl2 Arl2 subfamily. 99.9 7.4E-21 1.9E-25 154.8 11.8 150 23-184 15-172 (173)
60 cd01889 SelB_euk SelB subfamil 99.9 3.7E-21 9.5E-26 156.7 10.1 157 24-188 2-187 (192)
61 cd04155 Arl3 Arl3 subfamily. 99.8 9.6E-21 2.4E-25 154.1 11.2 152 22-185 14-173 (173)
62 pfam00025 Arf ADP-ribosylation 99.8 1.9E-20 4.8E-25 152.2 12.3 154 21-186 13-174 (174)
63 cd01891 TypA_BipA TypA (tyrosi 99.8 4.6E-20 1.2E-24 149.6 12.5 157 24-188 4-193 (194)
64 CHL00189 infB translation init 99.8 1.5E-20 3.8E-25 152.9 9.6 157 19-186 269-437 (770)
65 cd01888 eIF2_gamma eIF2-gamma 99.8 5.4E-20 1.4E-24 149.2 9.1 157 24-188 2-200 (203)
66 PRK05306 infB translation init 99.8 1.2E-19 3.1E-24 147.0 10.9 159 17-186 336-503 (839)
67 TIGR01393 lepA GTP-binding pro 99.8 5.5E-20 1.4E-24 149.2 8.2 165 25-204 6-193 (598)
68 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.2E-19 8.1E-24 144.3 11.2 149 25-185 2-158 (158)
69 PRK04004 translation initiatio 99.8 3.1E-19 7.8E-24 144.3 9.3 157 19-185 2-215 (592)
70 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.6E-19 1.4E-23 142.6 9.8 153 25-185 2-167 (167)
71 cd04159 Arl10_like Arl10-like 99.8 1E-18 2.6E-23 140.9 10.9 149 25-185 2-159 (159)
72 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.5E-18 8.9E-23 137.5 11.7 153 21-185 14-174 (174)
73 PRK05433 GTP-binding protein L 99.8 3.2E-18 8.1E-23 137.8 10.8 161 17-188 4-185 (601)
74 pfam00071 Ras Ras family. Incl 99.8 8.1E-18 2.1E-22 135.1 12.3 152 25-186 2-160 (162)
75 TIGR00475 selB selenocysteine- 99.8 2.5E-18 6.4E-23 138.4 9.6 155 24-186 2-171 (627)
76 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.8E-18 7.2E-23 138.1 9.2 158 23-188 3-194 (195)
77 PTZ00133 ADP-ribosylation fact 99.8 7.3E-18 1.9E-22 135.4 11.0 156 21-188 16-179 (182)
78 smart00177 ARF ARF-like small 99.8 1.3E-17 3.4E-22 133.8 12.0 153 23-187 14-174 (175)
79 cd04157 Arl6 Arl6 subfamily. 99.8 1.3E-17 3.4E-22 133.7 11.3 148 25-184 2-161 (162)
80 COG0532 InfB Translation initi 99.8 6.8E-18 1.7E-22 135.6 9.7 157 19-186 2-169 (509)
81 cd04149 Arf6 Arf6 subfamily. 99.8 1.8E-17 4.5E-22 133.0 11.8 153 21-185 8-168 (168)
82 cd04151 Arl1 Arl1 subfamily. 99.7 1.8E-17 4.6E-22 132.9 11.5 148 25-184 2-157 (158)
83 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.6E-17 4E-22 133.3 11.1 148 25-184 2-159 (160)
84 cd00879 Sar1 Sar1 subfamily. 99.7 3E-17 7.5E-22 131.5 12.2 153 22-186 19-190 (190)
85 cd01899 Ygr210 Ygr210 subfamil 99.7 9.2E-18 2.3E-22 134.8 8.9 86 25-112 1-110 (318)
86 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 3.4E-17 8.7E-22 131.1 11.5 160 21-189 2-172 (183)
87 cd04158 ARD1 ARD1 subfamily. 99.7 3.1E-17 7.9E-22 131.4 11.2 154 25-190 2-164 (169)
88 cd04168 TetM_like Tet(M)-like 99.7 4.2E-17 1.1E-21 130.6 11.8 112 24-143 1-129 (237)
89 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.1E-17 7.8E-22 131.4 10.9 150 24-185 2-159 (159)
90 PRK09601 translation-associate 99.7 5.8E-17 1.5E-21 129.6 11.6 88 23-112 3-107 (364)
91 COG3596 Predicted GTPase [Gene 99.7 4E-17 1E-21 130.7 10.6 193 20-217 37-248 (296)
92 PRK04000 translation initiatio 99.7 2.6E-17 6.6E-22 131.9 9.6 159 22-188 8-201 (410)
93 KOG0462 consensus 99.7 6E-17 1.5E-21 129.5 11.2 173 18-207 58-249 (650)
94 PRK10512 selenocysteinyl-tRNA- 99.7 8.5E-17 2.2E-21 128.5 11.5 156 24-187 2-166 (615)
95 KOG1145 consensus 99.7 2.3E-17 5.8E-22 132.2 8.0 159 19-186 150-315 (683)
96 cd04165 GTPBP1_like GTPBP1-lik 99.7 8.8E-17 2.2E-21 128.4 10.9 156 24-188 1-223 (224)
97 cd00154 Rab Rab family. Rab G 99.7 6.9E-17 1.8E-21 129.1 10.2 150 24-184 2-159 (159)
98 cd00876 Ras Ras family. The R 99.7 1.9E-16 5E-21 126.2 12.4 151 25-186 2-160 (160)
99 PRK10218 GTP-binding protein; 99.7 2.8E-16 7.1E-21 125.2 12.7 161 17-188 2-196 (607)
100 PRK00741 prfC peptide chain re 99.7 2.5E-16 6.3E-21 125.5 12.4 121 15-143 3-144 (526)
101 PRK09602 translation-associate 99.7 6.6E-17 1.7E-21 129.3 9.3 87 23-111 3-113 (396)
102 PRK12317 elongation factor 1-a 99.7 1.4E-16 3.5E-21 127.2 10.7 152 18-177 3-196 (426)
103 PRK12736 elongation factor Tu; 99.7 1.8E-16 4.7E-21 126.4 11.1 158 22-187 12-201 (394)
104 cd01886 EF-G Elongation factor 99.7 3.1E-16 7.9E-21 124.9 12.1 152 24-185 1-171 (270)
105 cd04169 RF3 RF3 subfamily. Pe 99.7 4.1E-16 1E-20 124.1 12.4 151 24-184 4-177 (267)
106 PTZ00258 GTP-binding protein; 99.7 1.2E-16 3E-21 127.6 9.4 87 24-112 24-127 (392)
107 TIGR01394 TypA_BipA GTP-bindin 99.7 7E-17 1.8E-21 129.1 8.2 155 24-188 3-203 (609)
108 cd04170 EF-G_bact Elongation f 99.7 3.1E-16 7.9E-21 124.9 11.3 182 24-219 1-205 (268)
109 cd04112 Rab26 Rab26 subfamily. 99.7 3.7E-16 9.3E-21 124.4 11.6 163 24-196 2-172 (191)
110 PTZ00327 eukaryotic translatio 99.7 2.4E-16 6.1E-21 125.6 10.4 161 20-188 35-237 (460)
111 smart00178 SAR Sar1p-like memb 99.7 3.5E-16 8.9E-21 124.6 11.1 152 23-186 18-184 (184)
112 COG0012 Predicted GTPase, prob 99.7 8.7E-17 2.2E-21 128.5 8.0 88 23-112 3-108 (372)
113 cd01883 EF1_alpha Eukaryotic e 99.7 2.3E-16 6E-21 125.7 10.0 145 24-176 1-194 (219)
114 PRK12735 elongation factor Tu; 99.7 3.4E-16 8.7E-21 124.6 10.4 159 22-188 12-204 (396)
115 cd00882 Ras_like_GTPase Ras-li 99.7 2.5E-16 6.5E-21 125.5 9.7 148 27-184 1-157 (157)
116 cd01858 NGP_1 NGP-1. Autoanti 99.7 1.3E-16 3.2E-21 127.4 7.8 60 18-80 98-157 (157)
117 cd04132 Rho4_like Rho4-like su 99.7 6.5E-16 1.6E-20 122.8 11.4 153 25-187 3-167 (187)
118 PRK00049 elongation factor Tu; 99.7 4.2E-16 1.1E-20 124.1 10.4 158 22-187 12-204 (397)
119 cd01864 Rab19 Rab19 subfamily. 99.7 6.3E-16 1.6E-20 122.9 11.1 152 24-186 5-165 (165)
120 cd01860 Rab5_related Rab5-rela 99.7 7.1E-16 1.8E-20 122.6 10.9 153 24-187 3-163 (163)
121 cd04177 RSR1 RSR1 subgroup. R 99.7 1.1E-15 2.9E-20 121.3 11.8 152 25-186 4-163 (168)
122 cd04123 Rab21 Rab21 subfamily. 99.7 5.2E-16 1.3E-20 123.5 9.8 151 25-186 3-161 (162)
123 cd04124 RabL2 RabL2 subfamily. 99.7 9.4E-16 2.4E-20 121.8 11.2 151 24-187 2-158 (161)
124 cd01892 Miro2 Miro2 subfamily. 99.7 1.5E-15 3.7E-20 120.5 12.0 158 21-187 2-166 (169)
125 cd04139 RalA_RalB RalA/RalB su 99.7 1.1E-15 2.9E-20 121.2 11.4 153 25-188 3-163 (164)
126 cd01863 Rab18 Rab18 subfamily. 99.7 8.8E-16 2.2E-20 122.0 10.8 153 24-186 2-161 (161)
127 cd01867 Rab8_Rab10_Rab13_like 99.7 8.6E-16 2.2E-20 122.0 10.4 154 24-188 5-166 (167)
128 cd04114 Rab30 Rab30 subfamily. 99.7 1E-15 2.6E-20 121.5 10.8 153 23-186 8-168 (169)
129 TIGR02528 EutP ethanolamine ut 99.7 1.4E-16 3.7E-21 127.0 6.4 141 24-183 2-143 (144)
130 cd04166 CysN_ATPS CysN_ATPS su 99.7 4.7E-16 1.2E-20 123.8 8.9 156 25-195 2-195 (208)
131 CHL00071 tufA elongation facto 99.7 1E-15 2.6E-20 121.5 10.6 158 22-187 12-211 (409)
132 smart00175 RAB Rab subfamily o 99.7 6.5E-16 1.7E-20 122.8 9.5 153 24-187 2-162 (164)
133 cd04161 Arl2l1_Arl13_like Arl2 99.7 7.4E-16 1.9E-20 122.5 9.8 148 25-184 2-166 (167)
134 cd04113 Rab4 Rab4 subfamily. 99.7 8E-16 2.1E-20 122.2 9.9 152 24-186 2-161 (161)
135 PRK12739 elongation factor G; 99.7 4.4E-15 1.1E-19 117.5 13.5 118 16-143 6-140 (693)
136 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 8.9E-16 2.3E-20 121.9 9.9 154 24-188 2-166 (170)
137 smart00173 RAS Ras subfamily o 99.7 2.1E-15 5.5E-20 119.5 11.7 152 25-187 3-162 (164)
138 cd04116 Rab9 Rab9 subfamily. 99.7 1E-15 2.6E-20 121.6 10.0 152 24-185 7-169 (170)
139 PTZ00132 GTP-binding nuclear p 99.7 2E-15 5E-20 119.7 11.5 154 24-189 8-167 (209)
140 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.2E-15 8.1E-20 118.4 12.5 152 24-186 4-163 (164)
141 cd01862 Rab7 Rab7 subfamily. 99.7 1.7E-15 4.4E-20 120.1 11.0 155 24-188 2-168 (172)
142 cd01885 EF2 EF2 (for archaea a 99.6 4.4E-16 1.1E-20 123.9 7.9 157 24-188 2-221 (222)
143 cd04120 Rab12 Rab12 subfamily. 99.6 2E-15 5.1E-20 119.7 11.3 156 24-189 2-165 (202)
144 cd04117 Rab15 Rab15 subfamily. 99.6 1.6E-15 4.1E-20 120.3 10.7 152 24-186 2-161 (161)
145 cd04138 H_N_K_Ras_like H-Ras/N 99.6 3.3E-15 8.5E-20 118.2 12.4 151 25-186 4-161 (162)
146 cd04125 RabA_like RabA-like su 99.6 1E-15 2.6E-20 121.5 9.7 154 24-188 2-163 (188)
147 cd04137 RheB Rheb (Ras Homolog 99.6 2.9E-15 7.3E-20 118.7 11.9 152 25-187 4-163 (180)
148 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 3.9E-15 1E-19 117.8 12.5 157 24-191 2-172 (201)
149 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.9E-15 5E-20 119.7 10.9 168 24-202 2-181 (182)
150 cd01859 MJ1464 MJ1464. This f 99.6 3.5E-16 8.9E-21 124.6 7.0 95 93-189 4-98 (156)
151 smart00176 RAN Ran (Ras-relate 99.6 2.6E-15 6.7E-20 118.9 11.5 166 28-205 1-180 (200)
152 cd04119 RJL RJL (RabJ-Like) su 99.6 1.9E-15 5E-20 119.7 10.6 152 24-186 2-166 (168)
153 cd00877 Ran Ran (Ras-related n 99.6 2.7E-15 6.9E-20 118.8 11.2 154 25-191 3-163 (166)
154 cd01893 Miro1 Miro1 subfamily. 99.6 4.2E-15 1.1E-19 117.6 12.2 152 24-186 2-163 (166)
155 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 2.1E-15 5.4E-20 119.5 10.5 154 24-188 4-165 (166)
156 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.5E-15 6.3E-20 119.1 10.8 154 24-186 2-163 (164)
157 PTZ00141 elongation factor 1 a 99.6 4.4E-15 1.1E-19 117.4 12.0 155 23-185 8-221 (443)
158 smart00174 RHO Rho (Ras homolo 99.6 5.2E-15 1.3E-19 117.0 12.4 152 25-186 1-171 (174)
159 cd04121 Rab40 Rab40 subfamily. 99.6 2.9E-15 7.4E-20 118.6 11.0 154 24-188 8-168 (189)
160 PTZ00336 elongation factor 1-a 99.6 3.3E-15 8.5E-20 118.2 11.3 156 22-185 7-223 (449)
161 cd01868 Rab11_like Rab11-like. 99.6 1.9E-15 5E-20 119.7 10.1 152 24-186 5-164 (165)
162 cd01849 YlqF_related_GTPase Yl 99.6 6.9E-16 1.8E-20 122.6 7.8 56 22-80 100-155 (155)
163 cd04118 Rab24 Rab24 subfamily. 99.6 5E-15 1.3E-19 117.1 12.1 155 24-188 2-167 (193)
164 cd01856 YlqF YlqF. Proteins o 99.6 5.8E-16 1.5E-20 123.1 7.3 92 93-188 11-102 (171)
165 cd00157 Rho Rho (Ras homology) 99.6 6.4E-15 1.6E-19 116.4 12.4 151 24-184 2-170 (171)
166 cd04122 Rab14 Rab14 subfamily. 99.6 1.5E-15 3.8E-20 120.5 9.1 154 24-188 4-165 (166)
167 cd04110 Rab35 Rab35 subfamily. 99.6 3.2E-15 8.1E-20 118.4 10.7 155 24-188 8-168 (199)
168 cd01865 Rab3 Rab3 subfamily. 99.6 2.8E-15 7.1E-20 118.7 10.4 152 24-186 3-162 (165)
169 cd04147 Ras_dva Ras-dva subfam 99.6 4.9E-15 1.2E-19 117.2 11.6 152 25-187 2-163 (198)
170 cd01861 Rab6 Rab6 subfamily. 99.6 3.2E-15 8.1E-20 118.4 10.3 151 25-186 3-161 (161)
171 cd01866 Rab2 Rab2 subfamily. 99.6 4.2E-15 1.1E-19 117.6 10.8 153 24-188 6-167 (168)
172 cd04127 Rab27A Rab27a subfamil 99.6 6.8E-15 1.7E-19 116.2 11.5 151 24-186 6-176 (180)
173 cd01857 HSR1_MMR1 HSR1/MMR1. 99.6 1E-15 2.5E-20 121.6 7.2 58 22-82 83-140 (141)
174 PRK13351 elongation factor G; 99.6 1.1E-14 2.8E-19 114.9 12.4 112 24-143 10-138 (687)
175 KOG0410 consensus 99.6 4.8E-16 1.2E-20 123.7 5.4 154 18-187 174-341 (410)
176 cd04167 Snu114p Snu114p subfam 99.6 4.8E-15 1.2E-19 117.2 10.5 157 24-188 2-212 (213)
177 cd01870 RhoA_like RhoA-like su 99.6 1.5E-14 3.7E-19 114.1 12.7 153 24-186 3-174 (175)
178 cd04140 ARHI_like ARHI subfami 99.6 9.8E-15 2.5E-19 115.2 11.8 151 25-186 4-164 (165)
179 PRK00007 elongation factor G; 99.6 1.4E-14 3.5E-19 114.2 12.2 110 24-143 12-141 (693)
180 cd01900 YchF YchF subfamily. 99.6 1.9E-15 5E-20 119.7 7.7 87 25-113 1-104 (274)
181 PRK05124 cysN sulfate adenylyl 99.6 1.4E-14 3.6E-19 114.2 11.8 152 18-177 23-215 (475)
182 cd04175 Rap1 Rap1 subgroup. T 99.6 1.2E-14 3E-19 114.7 11.4 151 25-186 4-162 (164)
183 cd04176 Rap2 Rap2 subgroup. T 99.6 1.1E-14 2.8E-19 114.9 11.1 151 25-186 4-162 (163)
184 cd04106 Rab23_lke Rab23-like s 99.6 1.4E-14 3.6E-19 114.2 11.6 151 24-185 2-161 (162)
185 COG0481 LepA Membrane GTPase L 99.6 4E-15 1E-19 117.7 8.8 160 17-188 6-187 (603)
186 cd04133 Rop_like Rop subfamily 99.6 2.6E-14 6.7E-19 112.4 12.9 153 24-186 3-172 (176)
187 cd04144 Ras2 Ras2 subfamily. 99.6 1.4E-14 3.7E-19 114.1 11.3 154 25-189 2-165 (190)
188 cd04126 Rab20 Rab20 subfamily. 99.6 1.7E-14 4.4E-19 113.6 11.7 152 24-187 2-190 (220)
189 KOG1486 consensus 99.6 5E-15 1.3E-19 117.1 8.7 94 20-115 58-153 (364)
190 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.5E-14 6.3E-19 112.6 12.2 154 24-188 4-165 (172)
191 cd04136 Rap_like Rap-like subf 99.6 1.2E-14 3.1E-19 114.6 10.4 151 25-186 4-162 (163)
192 cd04134 Rho3 Rho3 subfamily. 99.6 4.5E-14 1.2E-18 110.9 13.0 153 25-188 3-175 (189)
193 cd01871 Rac1_like Rac1-like su 99.6 4.9E-14 1.3E-18 110.7 13.0 154 22-185 1-173 (174)
194 KOG1490 consensus 99.6 1.6E-15 4.2E-20 120.2 5.4 165 17-186 165-340 (620)
195 TIGR03596 GTPase_YlqF ribosome 99.6 3.6E-15 9.3E-20 118.0 6.9 62 20-84 116-177 (276)
196 PRK12740 elongation factor G; 99.6 3.2E-14 8.3E-19 111.8 11.7 106 28-143 1-125 (670)
197 cd04130 Wrch_1 Wrch-1 subfamil 99.6 4.8E-14 1.2E-18 110.7 12.5 150 24-183 2-170 (173)
198 cd01874 Cdc42 Cdc42 subfamily. 99.6 6.5E-14 1.7E-18 109.9 13.2 154 23-186 2-174 (175)
199 cd04146 RERG_RasL11_like RERG/ 99.6 2.5E-14 6.5E-19 112.5 11.0 153 25-187 2-164 (165)
200 cd04104 p47_IIGP_like p47 (47- 99.6 7.7E-15 2E-19 115.9 8.3 159 23-189 2-186 (197)
201 cd04143 Rhes_like Rhes_like su 99.6 4E-14 1E-18 111.3 12.0 152 25-187 3-171 (247)
202 cd04142 RRP22 RRP22 subfamily. 99.6 2.3E-14 5.9E-19 112.8 10.4 165 24-190 2-177 (198)
203 COG3276 SelB Selenocysteine-sp 99.6 1.2E-14 3E-19 114.6 8.9 155 24-186 2-161 (447)
204 cd04135 Tc10 TC10 subfamily. 99.6 5.5E-14 1.4E-18 110.4 12.1 152 24-185 2-172 (174)
205 cd01875 RhoG RhoG subfamily. 99.6 9.4E-14 2.4E-18 108.9 13.3 156 21-186 2-176 (191)
206 cd04129 Rho2 Rho2 subfamily. 99.6 5.8E-14 1.5E-18 110.2 12.0 153 24-186 3-172 (187)
207 cd04111 Rab39 Rab39 subfamily. 99.6 6.2E-14 1.6E-18 110.0 12.1 151 25-187 5-166 (211)
208 PRK09563 rbgA ribosomal biogen 99.6 6.5E-15 1.6E-19 116.4 7.0 60 22-84 121-180 (282)
209 TIGR00231 small_GTP small GTP- 99.6 1.9E-14 4.9E-19 113.3 9.0 162 22-183 3-185 (186)
210 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1E-13 2.7E-18 108.5 12.4 154 23-187 3-169 (170)
211 PRK05506 bifunctional sulfate 99.6 1.2E-14 3.2E-19 114.5 7.6 148 22-177 7-194 (613)
212 cd04148 RGK RGK subfamily. Th 99.6 1E-13 2.6E-18 108.6 12.0 151 25-187 3-163 (221)
213 cd04178 Nucleostemin_like Nucl 99.5 1.3E-14 3.4E-19 114.4 7.4 56 22-80 117-172 (172)
214 TIGR00491 aIF-2 translation in 99.5 7.6E-15 1.9E-19 115.9 5.7 142 33-186 561-763 (1145)
215 cd04109 Rab28 Rab28 subfamily. 99.5 1.6E-13 4.2E-18 107.3 12.5 152 25-187 3-166 (215)
216 cd04131 Rnd Rnd subfamily. Th 99.5 2.1E-13 5.3E-18 106.6 12.9 153 24-186 3-175 (178)
217 pfam00350 Dynamin_N Dynamin fa 99.5 1.6E-14 4.1E-19 113.8 6.9 111 25-140 1-168 (168)
218 COG5256 TEF1 Translation elong 99.5 6.6E-14 1.7E-18 109.9 10.0 156 23-193 8-210 (428)
219 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 6.3E-14 1.6E-18 110.0 9.7 152 25-188 2-160 (164)
220 COG4108 PrfC Peptide chain rel 99.5 6.9E-14 1.8E-18 109.7 9.3 158 23-188 13-277 (528)
221 KOG1144 consensus 99.5 1E-12 2.6E-17 102.2 13.9 222 16-272 469-747 (1064)
222 COG1161 Predicted GTPases [Gen 99.5 3.1E-14 8E-19 111.9 6.1 62 20-84 130-191 (322)
223 TIGR02034 CysN sulfate adenyly 99.5 3E-14 7.7E-19 112.0 3.9 153 29-196 7-201 (411)
224 COG1217 TypA Predicted membran 99.5 8.8E-13 2.2E-17 102.6 10.8 156 24-188 7-196 (603)
225 KOG1491 consensus 99.5 3.3E-13 8.5E-18 105.3 8.5 87 24-112 22-125 (391)
226 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 4.4E-12 1.1E-16 98.1 13.5 155 22-186 13-187 (232)
227 cd04103 Centaurin_gamma Centau 99.4 1.4E-12 3.5E-17 101.3 10.5 147 24-186 2-158 (158)
228 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 3E-12 7.6E-17 99.2 12.0 152 24-185 7-178 (182)
229 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 4.5E-12 1.2E-16 98.0 12.5 151 25-185 4-174 (222)
230 KOG1487 consensus 99.4 3.6E-13 9.3E-18 105.0 6.5 155 24-187 61-281 (358)
231 COG5257 GCD11 Translation init 99.4 6.3E-13 1.6E-17 103.5 7.7 161 22-190 10-205 (415)
232 KOG0092 consensus 99.4 2.5E-12 6.4E-17 99.6 10.5 163 21-194 4-174 (200)
233 TIGR00092 TIGR00092 GTP-bindin 99.4 3.2E-13 8.1E-18 105.4 5.2 88 19-110 2-107 (390)
234 COG2229 Predicted GTPase [Gene 99.4 2.9E-12 7.4E-17 99.2 9.9 158 22-187 10-179 (187)
235 KOG2486 consensus 99.4 4.8E-13 1.2E-17 104.3 5.4 161 23-186 137-315 (320)
236 pfam03308 ArgK ArgK protein. T 99.4 7.5E-12 1.9E-16 96.5 11.2 188 16-221 23-264 (267)
237 KOG0073 consensus 99.4 6.1E-12 1.5E-16 97.1 10.6 154 21-188 15-179 (185)
238 pfam05049 IIGP Interferon-indu 99.4 2.4E-12 6.2E-17 99.7 7.8 161 23-190 36-221 (375)
239 PRK07560 elongation factor EF- 99.3 4.4E-12 1.1E-16 98.1 8.3 121 15-143 13-152 (730)
240 PRK09435 arginine/ornithine tr 99.3 2.1E-11 5.3E-16 93.7 11.2 188 16-221 43-287 (325)
241 pfam04548 AIG1 AIG1 family. Ar 99.3 5.5E-12 1.4E-16 97.4 7.9 169 24-198 2-186 (200)
242 TIGR00503 prfC peptide chain r 99.3 5.4E-12 1.4E-16 97.5 7.5 156 25-188 14-277 (530)
243 cd01855 YqeH YqeH. YqeH is an 99.3 2.3E-12 6E-17 99.8 5.6 108 102-212 35-149 (190)
244 KOG0448 consensus 99.3 5.3E-11 1.3E-15 91.1 12.0 145 21-171 108-310 (749)
245 COG1100 GTPase SAR1 and relate 99.3 7E-12 1.8E-16 96.7 7.0 154 23-189 6-187 (219)
246 cd04105 SR_beta Signal recogni 99.3 3.9E-11 9.9E-16 91.9 10.4 109 24-144 2-123 (203)
247 cd01873 RhoBTB RhoBTB subfamil 99.3 2.2E-11 5.6E-16 93.5 9.0 153 22-186 2-195 (195)
248 KOG0461 consensus 99.3 2.5E-11 6.4E-16 93.1 8.9 156 23-186 8-192 (522)
249 PRK13768 GTPase; Provisional 99.3 4.5E-12 1.1E-16 98.0 5.1 164 24-189 4-249 (253)
250 KOG0458 consensus 99.3 1.5E-11 3.9E-16 94.5 7.8 180 24-212 179-415 (603)
251 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.8E-11 9.8E-16 91.9 9.3 150 4-171 21-180 (225)
252 TIGR00487 IF-2 translation ini 99.3 4E-11 1E-15 91.8 9.4 162 16-186 84-253 (594)
253 COG0480 FusA Translation elong 99.3 7.4E-11 1.9E-15 90.1 10.2 116 17-144 7-142 (697)
254 COG4917 EutP Ethanolamine util 99.2 1.3E-11 3.2E-16 95.1 6.1 144 24-187 3-146 (148)
255 TIGR03597 GTPase_YqeH ribosome 99.2 9.1E-12 2.3E-16 96.0 5.2 59 23-84 155-218 (360)
256 PRK13796 GTP-binding protein Y 99.2 1.1E-11 2.9E-16 95.4 5.5 60 23-85 163-227 (367)
257 KOG0094 consensus 99.2 7E-11 1.8E-15 90.3 9.2 155 20-190 20-188 (221)
258 cd04102 RabL3 RabL3 (Rab-like3 99.2 1.6E-10 4.2E-15 87.9 9.9 152 24-185 2-198 (202)
259 KOG1424 consensus 99.2 3.8E-11 9.7E-16 92.0 6.4 68 17-87 308-376 (562)
260 cd01853 Toc34_like Toc34-like 99.2 4.1E-11 1E-15 91.8 6.5 94 15-108 24-121 (249)
261 TIGR00483 EF-1_alpha translati 99.2 5E-11 1.3E-15 91.2 6.9 157 22-193 7-211 (445)
262 cd01859 MJ1464 MJ1464. This f 99.2 3.2E-11 8E-16 92.5 5.7 62 16-80 95-156 (156)
263 COG2895 CysN GTPases - Sulfate 99.2 8.3E-11 2.1E-15 89.8 7.5 145 24-176 8-192 (431)
264 pfam08477 Miro Miro-like prote 99.2 1.4E-10 3.5E-15 88.4 8.3 109 25-141 2-118 (118)
265 KOG0078 consensus 99.2 3.7E-10 9.5E-15 85.6 10.5 156 19-187 8-174 (207)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 9E-11 2.3E-15 89.6 7.3 172 24-197 2-195 (196)
267 KOG0075 consensus 99.2 2.4E-11 6E-16 93.3 4.3 150 25-187 23-182 (186)
268 pfam00735 Septin Septin. Membe 99.2 8.6E-10 2.2E-14 83.2 11.9 213 24-271 6-258 (280)
269 KOG0084 consensus 99.1 4.8E-10 1.2E-14 84.9 10.0 154 25-189 12-174 (205)
270 COG1703 ArgK Putative periplas 99.1 2.4E-09 6.1E-14 80.3 12.8 189 17-223 46-290 (323)
271 cd01850 CDC_Septin CDC/Septin. 99.1 2.4E-09 6.2E-14 80.3 12.9 211 24-270 6-258 (276)
272 COG5258 GTPBP1 GTPase [General 99.1 3.8E-10 9.6E-15 85.6 8.7 163 22-193 117-345 (527)
273 cd01856 YlqF YlqF. Proteins o 99.1 1.1E-10 2.8E-15 89.0 4.7 58 21-81 114-171 (171)
274 TIGR00750 lao LAO/AO transport 99.1 9.1E-11 2.3E-15 89.5 4.3 190 20-221 33-302 (333)
275 pfam09439 SRPRB Signal recogni 99.1 7.6E-10 1.9E-14 83.6 8.4 112 24-144 5-126 (181)
276 KOG0395 consensus 99.1 5E-10 1.3E-14 84.8 7.1 155 22-186 3-164 (196)
277 KOG0076 consensus 99.1 4.1E-10 1E-14 85.3 6.3 157 23-189 18-189 (197)
278 COG0050 TufB GTPases - transla 99.0 1.4E-09 3.5E-14 81.9 8.4 156 24-188 14-202 (394)
279 KOG0394 consensus 99.0 1E-09 2.6E-14 82.8 7.2 153 23-189 10-180 (210)
280 KOG0070 consensus 99.0 1.3E-09 3.2E-14 82.1 7.5 156 21-188 16-179 (181)
281 KOG0468 consensus 99.0 9.7E-10 2.5E-14 82.9 6.4 123 14-144 120-263 (971)
282 KOG1532 consensus 99.0 7.5E-10 1.9E-14 83.6 5.6 198 24-223 21-300 (366)
283 KOG2484 consensus 99.0 2.6E-10 6.7E-15 86.5 3.2 61 20-83 250-310 (435)
284 KOG2485 consensus 99.0 8.4E-10 2.2E-14 83.3 5.7 72 24-95 145-221 (335)
285 KOG1954 consensus 99.0 3.1E-09 7.9E-14 79.6 8.4 127 23-151 59-232 (532)
286 PTZ00099 rab6; Provisional 99.0 1.2E-09 3E-14 82.4 6.0 113 69-190 28-145 (176)
287 pfam03029 ATP_bind_1 Conserved 99.0 8.2E-10 2.1E-14 83.4 5.2 156 27-185 1-231 (234)
288 KOG0466 consensus 98.9 1.3E-09 3.3E-14 82.1 5.2 167 22-198 38-254 (466)
289 COG5192 BMS1 GTP-binding prote 98.9 2.7E-09 7E-14 80.0 6.7 150 4-171 50-210 (1077)
290 TIGR00650 MG442 GTP-binding co 98.9 1.4E-09 3.7E-14 81.8 4.9 34 28-61 1-77 (123)
291 COG0378 HypB Ni2+-binding GTPa 98.9 5.6E-09 1.4E-13 77.9 7.9 147 23-186 14-200 (202)
292 PRK12289 ribosome-associated G 98.9 1.7E-09 4.4E-14 81.3 5.1 89 96-186 83-173 (351)
293 KOG1143 consensus 98.9 1.2E-09 3E-14 82.3 3.5 181 23-212 168-412 (591)
294 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.9E-09 4.9E-14 81.0 4.4 85 99-185 76-162 (287)
295 KOG0087 consensus 98.9 1.1E-08 2.8E-13 76.1 8.2 147 25-185 17-174 (222)
296 COG1162 Predicted GTPases [Gen 98.9 3.1E-09 7.9E-14 79.6 5.3 58 21-82 163-228 (301)
297 KOG0098 consensus 98.9 1.7E-08 4.4E-13 74.8 9.0 150 25-186 9-167 (216)
298 PRK01889 ribosome-associated G 98.9 2.7E-09 7E-14 80.0 4.9 83 99-184 109-193 (353)
299 pfam03193 DUF258 Protein of un 98.9 2.8E-09 7.2E-14 79.9 4.5 56 24-82 37-99 (161)
300 KOG0467 consensus 98.8 2.3E-08 6E-13 73.9 8.2 113 23-143 10-137 (887)
301 cd01849 YlqF_related_GTPase Yl 98.8 5.2E-09 1.3E-13 78.1 4.8 85 103-188 1-86 (155)
302 PRK00098 ribosome-associated G 98.8 4.2E-09 1.1E-13 78.8 3.9 85 99-185 78-165 (298)
303 PRK10463 hydrogenase nickel in 98.8 6E-09 1.5E-13 77.8 4.3 157 23-185 105-287 (290)
304 KOG0080 consensus 98.8 3.2E-08 8.1E-13 73.1 7.9 158 24-195 13-182 (209)
305 TIGR03596 GTPase_YlqF ribosome 98.8 7.6E-09 1.9E-13 77.1 4.6 93 93-189 13-105 (276)
306 KOG0090 consensus 98.8 1.3E-08 3.2E-13 75.7 5.6 112 24-144 40-159 (238)
307 KOG0095 consensus 98.8 5.5E-08 1.4E-12 71.5 8.8 157 18-186 2-168 (213)
308 KOG0465 consensus 98.8 2.1E-08 5.3E-13 74.3 6.3 115 21-144 38-170 (721)
309 PRK09866 hypothetical protein; 98.8 6.5E-09 1.6E-13 77.6 3.6 116 69-187 229-355 (742)
310 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.5E-08 3.8E-13 75.2 5.4 92 95-187 2-95 (157)
311 KOG1707 consensus 98.7 4.1E-08 1.1E-12 72.3 7.4 167 14-196 4-185 (625)
312 KOG1547 consensus 98.7 1.2E-07 3E-12 69.4 9.6 203 19-259 40-282 (336)
313 KOG0074 consensus 98.7 4.6E-08 1.2E-12 72.1 7.4 157 22-190 17-182 (185)
314 PRK12288 ribosome-associated G 98.7 1.4E-08 3.6E-13 75.4 4.7 86 99-186 120-209 (344)
315 COG5019 CDC3 Septin family pro 98.7 9E-08 2.3E-12 70.2 8.2 132 24-156 25-188 (373)
316 PRK09563 rbgA ribosomal biogen 98.7 1.9E-08 5E-13 74.5 4.7 92 93-188 16-107 (282)
317 pfam04670 Gtr1_RagA Gtr1/RagA 98.7 1.6E-07 4E-12 68.6 9.2 120 25-147 2-128 (230)
318 KOG2423 consensus 98.6 6.7E-09 1.7E-13 77.5 1.2 60 22-84 307-366 (572)
319 TIGR00993 3a0901s04IAP86 chlor 98.6 6.5E-08 1.7E-12 71.1 5.7 91 17-109 118-215 (772)
320 KOG0463 consensus 98.6 1.5E-07 3.7E-12 68.8 7.4 165 17-189 128-359 (641)
321 TIGR00073 hypB hydrogenase acc 98.6 4.5E-08 1.2E-12 72.1 4.6 53 134-186 168-222 (225)
322 KOG2655 consensus 98.6 1.5E-07 3.8E-12 68.7 7.2 132 24-156 23-184 (366)
323 KOG0077 consensus 98.6 7.6E-08 1.9E-12 70.6 5.3 151 20-182 18-188 (193)
324 KOG0447 consensus 98.6 3.5E-07 8.9E-12 66.3 8.5 141 5-145 291-494 (980)
325 KOG0093 consensus 98.6 3.7E-07 9.3E-12 66.2 8.5 161 14-186 12-182 (193)
326 KOG4252 consensus 98.6 8.5E-08 2.2E-12 70.3 5.0 170 3-187 1-181 (246)
327 KOG0460 consensus 98.5 2.1E-07 5.4E-12 67.7 6.6 157 24-188 56-246 (449)
328 KOG0079 consensus 98.5 4.9E-07 1.3E-11 65.4 7.4 149 25-186 11-168 (198)
329 KOG0088 consensus 98.5 1.7E-07 4.4E-12 68.3 5.0 155 24-190 15-178 (218)
330 cd01855 YqeH YqeH. YqeH is an 98.5 1.2E-07 3.1E-12 69.3 4.1 55 23-80 128-190 (190)
331 smart00053 DYNc Dynamin, GTPas 98.5 2.1E-07 5.4E-12 67.7 5.3 122 24-146 28-208 (240)
332 KOG3883 consensus 98.5 1.6E-06 4E-11 62.1 9.5 166 21-194 8-184 (198)
333 TIGR00484 EF-G translation elo 98.5 2.9E-07 7.5E-12 66.8 5.6 246 24-293 12-390 (705)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.7E-07 4.4E-12 68.3 4.1 79 93-173 3-83 (141)
335 TIGR00991 3a0901s02IAP34 GTP-b 98.4 3E-07 7.7E-12 66.7 5.2 130 15-146 32-170 (328)
336 COG0523 Putative GTPases (G3E 98.4 9.9E-07 2.5E-11 63.4 7.8 151 26-180 5-194 (323)
337 KOG0071 consensus 98.4 1.6E-06 4E-11 62.1 8.1 152 24-188 19-179 (180)
338 KOG0091 consensus 98.4 3.1E-06 7.8E-11 60.2 8.8 150 25-184 11-170 (213)
339 PRK13796 GTP-binding protein Y 98.4 4.3E-07 1.1E-11 65.7 4.2 81 103-185 73-159 (367)
340 PRK05703 flhF flagellar biosyn 98.3 1.6E-07 4.1E-12 68.5 1.7 123 19-145 207-360 (412)
341 KOG0086 consensus 98.3 1.3E-06 3.3E-11 62.7 6.2 153 15-179 1-163 (214)
342 TIGR03597 GTPase_YqeH ribosome 98.3 4.9E-07 1.2E-11 65.4 4.1 84 100-185 62-151 (360)
343 PRK06995 flhF flagellar biosyn 98.2 4.4E-07 1.1E-11 65.7 2.0 116 21-145 175-326 (404)
344 KOG0072 consensus 98.2 1.2E-06 3E-11 62.9 3.9 150 24-188 20-180 (182)
345 PRK12289 ribosome-associated G 98.2 2E-06 5.1E-11 61.4 4.6 57 23-82 172-235 (351)
346 cd03114 ArgK-like The function 98.2 3.1E-06 8E-11 60.2 5.3 102 25-141 2-148 (148)
347 pfam02492 cobW CobW/HypB/UreG, 98.1 1.5E-05 3.8E-10 55.8 8.2 132 25-166 3-174 (174)
348 PRK11537 putative GTP-binding 98.1 1.5E-05 3.9E-10 55.7 7.8 139 24-167 6-185 (317)
349 TIGR03348 VI_IcmF type VI secr 98.1 1.2E-05 3.2E-10 56.3 7.2 115 24-144 113-257 (1169)
350 TIGR02836 spore_IV_A stage IV 98.1 2.5E-05 6.3E-10 54.4 8.5 172 24-202 19-246 (492)
351 pfam00448 SRP54 SRP54-type pro 98.1 2.2E-05 5.6E-10 54.7 7.8 143 23-179 2-183 (196)
352 cd03115 SRP The signal recogni 98.1 9.3E-06 2.4E-10 57.1 5.6 117 24-146 2-155 (173)
353 PRK12724 flagellar biosynthesi 98.0 1.6E-05 4.1E-10 55.6 6.7 121 22-145 223-374 (432)
354 PRK12723 flagellar biosynthesi 98.0 3.2E-05 8.3E-10 53.6 7.6 123 18-146 170-328 (388)
355 KOG0097 consensus 98.0 2.4E-05 6.2E-10 54.4 6.8 143 25-179 14-165 (215)
356 PRK00098 ribosome-associated G 98.0 7.5E-06 1.9E-10 57.7 4.0 55 24-82 166-227 (298)
357 COG1419 FlhF Flagellar GTP-bin 98.0 9.1E-06 2.3E-10 57.2 4.2 118 21-144 202-352 (407)
358 KOG0469 consensus 98.0 5.7E-06 1.4E-10 58.5 3.1 112 23-143 20-163 (842)
359 PRK12288 ribosome-associated G 98.0 8.4E-06 2.2E-10 57.4 3.9 56 24-82 209-271 (344)
360 pfam09547 Spore_IV_A Stage IV 97.9 0.00054 1.4E-08 45.7 12.7 220 24-247 19-312 (492)
361 cd01854 YjeQ_engC YjeQ/EngC. 97.9 1.1E-05 2.8E-10 56.6 3.9 56 24-82 163-225 (287)
362 KOG1707 consensus 97.9 0.0002 5E-09 48.6 10.1 155 19-186 421-582 (625)
363 TIGR00485 EF-Tu translation el 97.8 4.5E-05 1.1E-09 52.7 6.1 156 23-186 13-193 (394)
364 pfam05783 DLIC Dynein light in 97.8 0.00035 8.9E-09 46.9 10.1 60 128-188 213-284 (490)
365 PRK11889 flhF flagellar biosyn 97.8 1.7E-05 4.2E-10 55.5 3.1 117 23-145 242-392 (436)
366 KOG2484 consensus 97.8 2.2E-05 5.5E-10 54.7 3.7 81 92-174 137-219 (435)
367 TIGR01425 SRP54_euk signal rec 97.8 4E-05 1E-09 53.0 5.0 169 16-188 115-333 (453)
368 KOG0459 consensus 97.8 4E-05 1E-09 53.0 4.9 158 23-194 80-287 (501)
369 KOG0083 consensus 97.8 7.8E-06 2E-10 57.6 1.1 155 27-196 2-169 (192)
370 KOG0464 consensus 97.8 0.00026 6.6E-09 47.8 8.8 117 20-144 35-168 (753)
371 TIGR00490 aEF-2 translation el 97.8 9.4E-05 2.4E-09 50.6 6.5 162 16-185 13-231 (724)
372 PRK01889 ribosome-associated G 97.7 3.3E-05 8.3E-10 53.6 4.1 56 24-82 196-258 (353)
373 PRK12727 flagellar biosynthesi 97.7 1.1E-05 2.8E-10 56.7 1.5 119 21-144 347-496 (557)
374 cd01851 GBP Guanylate-binding 97.7 0.00018 4.5E-09 48.8 7.1 62 22-83 7-73 (224)
375 KOG0081 consensus 97.7 3.7E-05 9.4E-10 53.2 3.6 147 27-186 14-180 (219)
376 cd04178 Nucleostemin_like Nucl 97.7 4.8E-05 1.2E-09 52.5 4.1 57 103-159 1-59 (172)
377 PRK06731 flhF flagellar biosyn 97.7 2.8E-05 7.1E-10 54.0 2.9 119 22-146 75-227 (270)
378 KOG0393 consensus 97.7 9.7E-05 2.5E-09 50.5 5.5 156 21-186 3-178 (198)
379 COG1161 Predicted GTPases [Gen 97.6 4.6E-05 1.2E-09 52.6 3.5 97 74-180 14-110 (322)
380 TIGR03499 FlhF flagellar biosy 97.6 4.1E-05 1E-09 53.0 3.1 13 41-53 20-32 (282)
381 TIGR00101 ureG urease accessor 97.6 0.00039 1E-08 46.6 8.0 150 24-188 3-197 (199)
382 KOG1249 consensus 97.6 1.9E-05 4.7E-10 55.2 1.2 25 24-48 215-239 (572)
383 COG1618 Predicted nucleotide k 97.6 0.00081 2.1E-08 44.6 9.2 152 24-188 7-177 (179)
384 TIGR03263 guanyl_kin guanylate 97.6 4.3E-05 1.1E-09 52.8 2.6 54 24-79 3-56 (180)
385 KOG2203 consensus 97.6 5.8E-05 1.5E-09 52.0 3.2 87 21-107 32-126 (772)
386 cd03112 CobW_like The function 97.5 0.00023 5.9E-09 48.1 5.6 115 25-142 3-158 (158)
387 TIGR01277 thiQ thiamine ABC tr 97.5 6.9E-05 1.7E-09 51.5 2.5 43 24-80 26-68 (213)
388 pfam07650 KH_2 KH domain. 97.5 0.00016 4.2E-09 49.1 4.3 53 246-308 1-53 (55)
389 COG3523 IcmF Type VI protein s 97.4 0.00011 2.9E-09 50.1 3.4 159 25-188 128-323 (1188)
390 KOG1673 consensus 97.4 0.00035 8.8E-09 47.0 5.7 167 19-196 17-195 (205)
391 cd03110 Fer4_NifH_child This p 97.4 0.0014 3.6E-08 43.0 8.7 109 25-144 2-157 (179)
392 KOG3905 consensus 97.4 0.00086 2.2E-08 44.4 7.0 58 129-187 221-290 (473)
393 KOG0780 consensus 97.4 0.0004 1E-08 46.5 5.3 126 15-144 94-254 (483)
394 pfam05879 RHD3 Root hair defec 97.3 0.00029 7.4E-09 47.5 4.5 86 28-113 1-95 (741)
395 KOG3886 consensus 97.3 9.2E-05 2.3E-09 50.7 1.8 120 24-146 6-132 (295)
396 KOG2423 consensus 97.3 0.00037 9.5E-09 46.7 4.8 90 97-187 209-300 (572)
397 PRK00300 gmk guanylate kinase; 97.3 0.00011 2.9E-09 50.1 2.1 55 24-80 9-64 (208)
398 cd00071 GMPK Guanosine monopho 97.3 0.00015 3.7E-09 49.4 2.5 54 25-80 2-56 (137)
399 TIGR01978 sufC FeS assembly AT 97.3 0.00043 1.1E-08 46.3 4.9 65 20-100 23-106 (248)
400 pfam01656 CbiA CobQ/CobB/MinD/ 97.3 0.00094 2.4E-08 44.2 6.4 76 68-153 111-187 (212)
401 TIGR02315 ABC_phnC phosphonate 97.3 0.0002 5.2E-09 48.4 2.8 25 20-44 25-50 (253)
402 TIGR02475 CobW cobalamin biosy 97.2 0.00056 1.4E-08 45.6 5.0 145 26-173 8-220 (349)
403 PRK00771 signal recognition pa 97.2 0.00037 9.3E-09 46.8 4.0 133 4-144 81-248 (433)
404 pfam00503 G-alpha G-protein al 97.2 0.0054 1.4E-07 39.2 9.5 136 65-219 185-344 (350)
405 TIGR00955 3a01204 Pigment prec 97.2 0.0003 7.6E-09 47.4 3.0 27 20-46 55-82 (671)
406 KOG2743 consensus 97.2 0.00055 1.4E-08 45.7 4.3 137 17-156 52-237 (391)
407 TIGR02857 CydD ABC transporter 97.2 0.00032 8.1E-09 47.2 3.0 24 22-45 377-401 (570)
408 pfam03266 DUF265 Protein of un 97.1 0.0011 2.9E-08 43.6 5.5 134 25-168 2-156 (168)
409 COG1116 TauB ABC-type nitrate/ 97.1 0.00043 1.1E-08 46.3 3.2 23 23-45 30-52 (248)
410 COG0194 Gmk Guanylate kinase [ 97.1 0.00021 5.4E-09 48.3 1.6 47 24-71 6-52 (191)
411 KOG0054 consensus 97.1 0.00056 1.4E-08 45.6 3.7 44 20-63 544-604 (1381)
412 KOG0446 consensus 97.1 0.00027 6.8E-09 47.7 1.9 126 20-145 27-214 (657)
413 PRK13695 putative NTPase; Prov 97.1 0.0011 2.7E-08 43.8 4.9 146 24-187 5-171 (174)
414 TIGR01184 ntrCD nitrate ABC tr 97.1 0.00062 1.6E-08 45.3 3.7 45 20-79 8-53 (230)
415 cd02036 MinD Bacterial cell di 97.0 0.0038 9.7E-08 40.2 7.5 108 25-142 2-126 (179)
416 COG1162 Predicted GTPases [Gen 97.0 0.00082 2.1E-08 44.5 4.0 87 99-186 77-166 (301)
417 KOG1424 consensus 97.0 0.00058 1.5E-08 45.5 3.3 78 91-171 164-244 (562)
418 TIGR00064 ftsY signal recognit 97.0 0.00029 7.3E-09 47.5 1.4 156 16-181 76-274 (284)
419 TIGR01192 chvA glucan exporter 97.0 0.00049 1.3E-08 46.0 2.5 26 19-44 357-383 (592)
420 KOG1533 consensus 96.9 0.00048 1.2E-08 46.0 2.1 117 25-147 5-180 (290)
421 COG1136 SalX ABC-type antimicr 96.9 0.00078 2E-08 44.7 3.2 27 20-46 28-55 (226)
422 smart00072 GuKc Guanylate kina 96.9 0.00045 1.1E-08 46.2 1.9 53 24-78 4-57 (184)
423 pfam02263 GBP Guanylate-bindin 96.9 0.0064 1.6E-07 38.8 7.7 58 21-83 20-87 (264)
424 cd03278 ABC_SMC_barmotin Barmo 96.9 0.00072 1.8E-08 44.9 2.8 27 18-44 18-44 (197)
425 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0036 9.1E-08 40.4 6.4 171 25-225 262-451 (491)
426 pfam00625 Guanylate_kin Guanyl 96.9 0.00056 1.4E-08 45.6 2.2 51 24-76 3-54 (182)
427 KOG0096 consensus 96.9 0.0052 1.3E-07 39.4 7.1 159 22-190 9-172 (216)
428 TIGR01009 rpsC_bact ribosomal 96.9 0.029 7.3E-07 34.6 10.9 101 189-307 21-124 (217)
429 KOG0054 consensus 96.8 0.00078 2E-08 44.7 2.7 22 24-45 1168-1189(1381)
430 cd03234 ABCG_White The White s 96.8 0.00098 2.5E-08 44.0 3.1 26 20-45 30-56 (226)
431 KOG3859 consensus 96.8 0.0019 4.8E-08 42.2 4.6 125 24-150 44-196 (406)
432 cd03291 ABCC_CFTR1 The CFTR su 96.8 0.00098 2.5E-08 44.0 3.1 26 21-46 61-87 (282)
433 cd03290 ABCC_SUR1_N The SUR do 96.8 0.0011 2.7E-08 43.8 3.1 23 24-46 29-51 (218)
434 TIGR03371 cellulose_yhjQ cellu 96.8 0.026 6.5E-07 34.9 10.2 127 68-211 113-242 (246)
435 cd03298 ABC_ThiQ_thiamine_tran 96.8 0.0011 2.7E-08 43.8 3.0 24 22-45 24-47 (211)
436 cd03240 ABC_Rad50 The catalyti 96.8 0.0007 1.8E-08 45.0 2.0 29 16-44 16-44 (204)
437 cd00066 G-alpha G protein alph 96.7 0.025 6.3E-07 35.0 9.8 138 64-218 155-313 (317)
438 TIGR02204 MsbA_rel ABC transpo 96.7 0.001 2.7E-08 43.9 2.6 25 21-45 364-389 (576)
439 COG3840 ThiQ ABC-type thiamine 96.7 0.0011 2.7E-08 43.8 2.7 23 24-46 27-49 (231)
440 TIGR00956 3a01205 Pleiotropic 96.7 0.0011 2.7E-08 43.8 2.6 106 21-131 851-1018(1466)
441 TIGR02203 MsbA_lipidA lipid A 96.7 0.00093 2.4E-08 44.2 2.3 26 20-45 385-411 (603)
442 PRK10416 cell division protein 96.7 0.01 2.5E-07 37.5 7.5 148 22-180 295-484 (499)
443 cd03236 ABC_RNaseL_inhibitor_d 96.7 0.0015 3.8E-08 42.9 3.3 26 20-45 23-49 (255)
444 PRK11248 tauB taurine transpor 96.7 0.0013 3.3E-08 43.2 3.0 24 23-46 28-51 (255)
445 PTZ00243 ABC transporter; Prov 96.7 0.0017 4.3E-08 42.5 3.5 40 23-62 687-742 (1560)
446 TIGR00176 mobB molybdopterin-g 96.7 0.0048 1.2E-07 39.6 5.8 29 25-53 2-36 (165)
447 TIGR00763 lon ATP-dependent pr 96.7 0.0039 9.8E-08 40.2 5.3 27 18-44 445-472 (941)
448 cd03292 ABC_FtsE_transporter F 96.7 0.0014 3.6E-08 43.0 3.0 23 23-45 28-50 (214)
449 cd03246 ABCC_Protease_Secretio 96.7 0.0015 3.8E-08 42.9 3.1 23 24-46 30-52 (173)
450 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.7 0.0015 3.8E-08 42.9 3.0 24 23-46 30-53 (238)
451 KOG1191 consensus 96.7 0.00044 1.1E-08 46.3 0.3 55 24-81 77-131 (531)
452 PHA02518 ParA-like protein; Pr 96.7 0.023 6E-07 35.1 9.1 171 25-213 3-208 (211)
453 TIGR03608 L_ocin_972_ABC putat 96.6 0.0016 4.1E-08 42.6 3.1 24 22-45 24-47 (206)
454 smart00275 G_alpha G protein a 96.6 0.016 4.2E-07 36.1 8.3 135 65-218 179-336 (342)
455 PRK10522 multidrug transporter 96.6 0.0017 4.3E-08 42.5 3.1 23 24-46 351-373 (547)
456 KOG0065 consensus 96.6 0.0017 4.2E-08 42.6 3.0 28 19-46 813-841 (1391)
457 cd03253 ABCC_ATM1_transporter 96.6 0.0017 4.2E-08 42.5 3.0 26 21-46 25-51 (236)
458 PRK10751 molybdopterin-guanine 96.6 0.00075 1.9E-08 44.8 1.2 23 23-45 3-25 (170)
459 CHL00131 ycf16 sulfate ABC tra 96.6 0.0017 4.4E-08 42.4 3.0 26 20-45 29-55 (252)
460 cd03262 ABC_HisP_GlnQ_permease 96.6 0.0017 4.3E-08 42.5 3.0 25 21-45 24-49 (213)
461 cd03254 ABCC_Glucan_exporter_l 96.6 0.0018 4.6E-08 42.3 3.1 24 23-46 30-53 (229)
462 PRK09984 phosphonate/organopho 96.6 0.0018 4.7E-08 42.3 3.1 26 20-45 27-53 (262)
463 TIGR02769 nickel_nikE nickel i 96.6 0.0023 5.9E-08 41.6 3.6 137 21-164 36-206 (267)
464 PRK13547 hmuV hemin importer A 96.6 0.0018 4.5E-08 42.4 3.0 23 24-46 29-51 (273)
465 cd03213 ABCG_EPDR ABCG transpo 96.6 0.0019 4.7E-08 42.2 3.1 26 21-46 33-59 (194)
466 cd03233 ABC_PDR_domain1 The pl 96.6 0.0019 4.9E-08 42.1 3.2 25 21-45 31-56 (202)
467 cd03256 ABC_PhnC_transporter A 96.6 0.0018 4.7E-08 42.3 3.0 26 21-46 25-51 (241)
468 PRK10771 thiQ thiamine transpo 96.6 0.0019 4.9E-08 42.1 3.1 25 21-45 23-48 (233)
469 cd03289 ABCC_CFTR2 The CFTR su 96.6 0.0019 5E-08 42.1 3.1 22 24-45 32-53 (275)
470 cd03297 ABC_ModC_molybdenum_tr 96.6 0.0019 4.7E-08 42.2 3.0 24 23-46 24-47 (214)
471 TIGR02142 modC_ABC molybdate A 96.6 0.0017 4.4E-08 42.4 2.8 100 139-252 161-266 (361)
472 cd03264 ABC_drug_resistance_li 96.6 0.002 5E-08 42.1 3.1 26 21-46 24-49 (211)
473 cd03232 ABC_PDR_domain2 The pl 96.6 0.0021 5.3E-08 41.9 3.2 27 20-46 30-57 (192)
474 cd03250 ABCC_MRP_domain1 Domai 96.5 0.0021 5.3E-08 41.9 3.0 23 24-46 33-55 (204)
475 TIGR02324 CP_lyasePhnL phospho 96.5 0.0019 4.9E-08 42.2 2.8 47 21-80 32-79 (224)
476 cd03245 ABCC_bacteriocin_expor 96.5 0.0021 5.4E-08 41.9 3.1 24 23-46 31-54 (220)
477 cd03300 ABC_PotA_N PotA is an 96.5 0.0022 5.6E-08 41.8 3.1 22 24-45 28-49 (232)
478 PRK13657 cyclic beta-1,2-gluca 96.5 0.0022 5.7E-08 41.7 3.1 23 24-46 363-385 (585)
479 PRK10789 putative multidrug tr 96.5 0.0021 5.5E-08 41.8 2.9 23 24-46 343-365 (569)
480 cd03257 ABC_NikE_OppD_transpor 96.5 0.0022 5.7E-08 41.7 3.0 24 23-46 32-55 (228)
481 PRK11701 phnK phosphonates tra 96.5 0.0024 6.2E-08 41.5 3.2 22 24-45 34-55 (258)
482 cd03296 ABC_CysA_sulfate_impor 96.5 0.0023 5.8E-08 41.7 3.0 22 24-45 30-51 (239)
483 PRK10078 ribose 1,5-bisphospho 96.5 0.0021 5.4E-08 41.9 2.8 37 24-60 4-41 (184)
484 cd03252 ABCC_Hemolysin The ABC 96.5 0.0024 6.1E-08 41.5 3.1 24 23-46 29-52 (237)
485 PRK09580 sufC cysteine desulfu 96.5 0.0025 6.5E-08 41.4 3.2 22 24-45 29-50 (248)
486 PRK10790 putative multidrug tr 96.5 0.0022 5.6E-08 41.8 2.8 26 21-46 365-391 (593)
487 COG3638 ABC-type phosphate/pho 96.5 0.0025 6.3E-08 41.4 3.1 22 23-44 31-52 (258)
488 PRK11160 cysteine/glutathione 96.5 0.0025 6.3E-08 41.4 3.1 23 24-46 369-391 (575)
489 PRK13646 cbiO cobalt transport 96.5 0.0024 6.2E-08 41.5 3.1 26 20-45 30-56 (286)
490 PRK10584 putative ABC transpor 96.5 0.0023 5.8E-08 41.7 2.9 22 24-45 38-59 (228)
491 PRK13631 cbiO cobalt transport 96.5 0.0025 6.5E-08 41.4 3.2 22 24-45 54-75 (320)
492 PRK10247 putative ABC transpor 96.5 0.0026 6.6E-08 41.3 3.2 23 24-46 35-57 (225)
493 PRK13634 cbiO cobalt transport 96.5 0.0022 5.7E-08 41.7 2.8 22 24-45 22-43 (276)
494 PTZ00243 ABC transporter; Prov 96.5 0.0024 6E-08 41.6 2.9 105 174-283 1449-1559(1560)
495 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.0025 6.4E-08 41.4 3.1 26 20-45 23-49 (200)
496 cd03228 ABCC_MRP_Like The MRP 96.5 0.0025 6.5E-08 41.4 3.1 23 24-46 30-52 (171)
497 PRK13648 cbiO cobalt transport 96.4 0.0027 6.8E-08 41.2 3.2 25 21-45 33-58 (269)
498 cd03248 ABCC_TAP TAP, the Tran 96.4 0.0025 6.4E-08 41.4 3.1 27 20-46 37-64 (226)
499 cd03369 ABCC_NFT1 Domain 2 of 96.4 0.0024 6E-08 41.5 2.9 23 24-46 36-58 (207)
500 PRK12726 flagellar biosynthesi 96.4 0.0021 5.3E-08 41.9 2.6 118 23-146 207-358 (407)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=0 Score=690.74 Aligned_cols=293 Identities=42% Similarity=0.636 Sum_probs=286.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 68512189983389986889999986892021058888602127899973994899998798401012357532100234
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
..+|||||||+|+||||||||+|+|+|+|+||||+||||||+++.|++|.+++|++|+||||+|++++.+++.|++.+++
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 97368999998699876899998985682575159853114421479986984499984898887651788999999998
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 55553210011000010000000122345442872025787211010434-57888864100123343110001387426
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~-l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
++.++|+++||+|++++++..+..+++.+++.+.|+++++||+|+++++. +++..+.+....+|.++||+||++|.|++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 72457599999866656891079999977643898699998402578477899999999850883017995101567889
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCC
Q ss_conf 78999998366223568964334302567899875999999730045642047885331066772358999998279841
Q gi|254780941|r 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 (311)
Q Consensus 177 ~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~I~v~k~sqk 256 (311)
.|.+.+.++||+|||+||+|++||+|++|+++|+||||+|++|++||||+++|++++|++++++.++|+|+|+|+|+|||
T Consensus 162 ~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK 241 (298)
T COG1159 162 TLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQK 241 (298)
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCC
T ss_conf 99999998588888848856515870888999999999998524426813799999977568985999999998227764
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHCCC
Q ss_conf 548746658899999999999999848981378998845883459799985288
Q gi|254780941|r 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREI 310 (311)
Q Consensus 257 ~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vkv~k~W~~~~~~l~~~~~ 310 (311)
+|||||+|+|||+||++||++||++|+++|||+|||||+++|++||+.|+++||
T Consensus 242 ~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~~W~~~~~~l~~lgy 295 (298)
T COG1159 242 GIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKKNWRDDEEALRELGY 295 (298)
T ss_pred CEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHCCC
T ss_conf 359878819999999999999999849966999999974561118899997077
No 2
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=100.00 E-value=0 Score=684.58 Aligned_cols=296 Identities=43% Similarity=0.662 Sum_probs=289.9
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCH
Q ss_conf 24368512189983389986889999986892021058888602127899973994899998798401012357532100
Q gi|254780941|r 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRL 94 (311)
Q Consensus 15 ~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~ 94 (311)
|.++++|||||||+|+||||||||+|+|+|+++||||++|||||+++.|+++.++.|++|+||||++++++.+++.|.+.
T Consensus 1 ~~~~~~ksG~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~~~l~~~~~~~ 80 (296)
T PRK00089 1 MSPEKFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKA 80 (296)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99889837999999899988899999996896176149599872838999997997999998998667467787899999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 23455553210011000010000000122345442872025787211010434578888641001233431100013874
Q gi|254780941|r 95 SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 95 ~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
+++++++||++++|+|++++.+..+..+++.+.+.++|+++|+||+|+++++.+++..+.+.+..+|.++|||||++|.|
T Consensus 81 ~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~k~~l~~~~~~l~~~~~f~~if~iSA~~~~g 160 (296)
T PRK00089 81 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVDKEELLPLLEELSELMDFAEIVPISALKGDN 160 (296)
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99999759999999857889898899999988874998899954788428988999999998537976599996778889
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCC
Q ss_conf 26789999983662235689643343025678998759999997300456420478853310667723589999982798
Q gi|254780941|r 175 CDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 (311)
Q Consensus 175 id~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~I~v~k~s 254 (311)
++.|+++|.+++|++||+||++++||++++|+++|+|||++|++|++||||+++|.+++|++++++.++|+|+|||+|+|
T Consensus 161 i~~L~~~l~~~lp~~~~~y~~d~~Td~~~~~~v~EiIREki~~~l~~EiPY~~~V~i~~~~e~~~~~~~I~~~I~V~k~s 240 (296)
T PRK00089 161 VDELLDLIAKYLPEGPPLYPEDQITDRPERFLAAEIIREKILRLLGDELPYSVAVEIEKFEEREDGLVRINATIYVERDS 240 (296)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 89999999986798865687301457848899999999999997311178427999999998688714999999987777
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHCCC
Q ss_conf 41548746658899999999999999848981378998845883459799985288
Q gi|254780941|r 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREI 310 (311)
Q Consensus 255 qk~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vkv~k~W~~~~~~l~~~~~ 310 (311)
||+||||++|++||+||++||++||++|+|+|||+|||||+|+||+|+++|+++||
T Consensus 241 qK~IiIGk~G~~IK~Ig~~aR~~lek~~~~kV~L~L~VKV~k~W~~~~~~l~~lGy 296 (296)
T PRK00089 241 QKGIVIGKGGAKLKKIGTEARKDIEKLLGKKVHLELWVKVKKGWRDDEKALRELGY 296 (296)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHCCC
T ss_conf 63589907857999999999999999968986999999988886779899986589
No 3
>KOG1423 consensus
Probab=100.00 E-value=0 Score=484.51 Aligned_cols=279 Identities=35% Similarity=0.553 Sum_probs=244.6
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC----CCCCCC
Q ss_conf 3685121899833899868899999868920210588886021278999739948999987984010123----575321
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS----YHKLMI 92 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~----l~~~~~ 92 (311)
+|+.||++||++|.||||||||.|.++|+++|+||+|+||||++++|++|.+++|++|+||||++.++.. +...+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred HHCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 11115789999708976545544576487212011566530201357871596589996487645334135678888765
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHH-HHHH----------------H
Q ss_conf 002345555321001100001000000012234544-287202578721101043457-8888----------------6
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILNKIDCVKPERLL-EQAE----------------I 154 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~-~~~p~IiVlNKiDlv~~~~l~-~~~~----------------~ 154 (311)
+.+|.++..||+++.|+|++..-...-..++..+.. ...|.|+|+||+|..+++.++ ...+ .
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 37898886388799998556776756807877789986187203304000221466776667760555100345658887
Q ss_pred H------------HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4------------1001233431100013874267899999836622356896433430256789987599999973004
Q gi|254780941|r 155 A------------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 (311)
Q Consensus 155 ~------------~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~E 222 (311)
. ..|.+|+++|+|||++|.|+++|.+||...+|+|||.||.++.|+.++++++.|+|||++|+++++|
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqE 306 (379)
T KOG1423 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQE 306 (379)
T ss_pred HCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 35597433564324764531489984046667899999997237999987776660666788999999999998648200
Q ss_pred CCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 5642047885331066772358999998279841548746658899999999999999848981378998845
Q gi|254780941|r 223 IPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 (311)
Q Consensus 223 iPY~~~v~v~~~~~~~~~~~~I~~~I~v~k~sqk~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vkv~ 295 (311)
|||++++++..|++..+|.++|.+.+.|+|+||++|||||+|.+|++||++|+.+|+.+|+|+|||.|-||++
T Consensus 307 VPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~Vk~k 379 (379)
T KOG1423 307 VPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLSVKLK 379 (379)
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECC
T ss_conf 6810178777753257847999999975787521589858986387999987788999961013699999609
No 4
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=0 Score=317.68 Aligned_cols=271 Identities=35% Similarity=0.511 Sum_probs=257.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE-EEEEECCCCHHH-CCCCCCCCCCHHHHHHH
Q ss_conf 1899833899868899999868920210588886021278999739948-999987984010-12357532100234555
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA-KDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~q-iifvDTPG~~~~-~~~l~~~~~~~~~~~l~ 100 (311)
|+++++|+||+|||||+|.++|++++++|++++|||..+.|+.+.+..| ++|+||||++.+ ++..+..+.+.+.+++.
T Consensus 1 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~~~~~~~~~~~~~~~~ 80 (278)
T TIGR00436 1 GFVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKHKLGELLNKEARSALG 80 (278)
T ss_pred CCEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 91121157765336677766324101002310123433200122366551578625876512456778888888875312
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCHHH
Q ss_conf 5321001100001000000012234544287202578721101-0434578888641001233--431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv-~~~~l~~~~~~~~~~~~~~--~i~~ISAk~g~Gid~ 177 (311)
++|++++++++..+....+..++..+.....|..+.+|+.|.. .++..+...........+. .++++|+.++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (278)
T TIGR00436 81 GVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNFPDKLLPLLDKYAGLEDFKPWPIVPISALKGDNTEE 160 (278)
T ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCHHHH
T ss_conf 32268898633445564046889876520210100122333101035677777666554204675201101121000577
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEEECC-CCCCEEEEEEEEEECCCC
Q ss_conf 8999998366223568964334302567899875999999-73004564204788533106-677235899999827984
Q gi|254780941|r 178 VLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFL-HLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQ 255 (311)
Q Consensus 178 L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~-~l~~EiPY~~~v~v~~~~~~-~~~~~~I~~~I~v~k~sq 255 (311)
+...+...+++++++||.+.+++.+.+|.++|++||+++. .+.+|+||++.+.++..... ..+.+.+++.+.+++.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (278)
T TIGR00436 161 LKAFLEAKLPEGPFYYPEDYVTDRPERFKISELLREKLLRNLTKEELPHSVALEIEEKSFNNEKGLLKIHALILVERESQ 240 (278)
T ss_pred HHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCC
T ss_conf 88887753033432265022036502367888889999887543104621334442000123323134434455403565
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 15487466588999999999999998489813789988
Q gi|254780941|r 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 (311)
Q Consensus 256 k~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vk 293 (311)
|++++|++|++++.+|.++|+++.++|++++++.+|||
T Consensus 241 ~~~~~g~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
T TIGR00436 241 KGIIIGKNGSLLKAIGLRARKDLLKLFDCDVYLELWVK 278 (278)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 51254164046788768889999987168503888638
No 5
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=100.00 E-value=4.2e-43 Score=298.71 Aligned_cols=167 Identities=41% Similarity=0.616 Sum_probs=152.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 51218998338998688999998689202105888860212789997399489999879840101235753210023455
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
+|||+|||+|+||||||||+|+|+|+++|+||++|||||+.+.|+++.++.|++|+||||++++++...+.+.+.+++++
T Consensus 1 ~~~~~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l 80 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99868999999999999999999589703323889826344236898499789999589866514567789999999865
Q ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 55321001100001000000012234544287202578721101043-45788886410012334311000138742678
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~-~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L 178 (311)
+++|++++|+|++++....+.++++.+...++|+++|+||+|+++++ ...+..+......++.+++||||++|+|+++|
T Consensus 81 ~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid~L 160 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDEL 160 (168)
T ss_pred HCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
T ss_conf 13655899997898986677999999998099859999788704787789999999996189996899977789699999
Q ss_pred HHHHHHHC
Q ss_conf 99999836
Q gi|254780941|r 179 LNYLCSTL 186 (311)
Q Consensus 179 ~~~L~~~l 186 (311)
++.|.++|
T Consensus 161 ~~~i~~~L 168 (168)
T cd04163 161 LEEIVKYL 168 (168)
T ss_pred HHHHHHHC
T ss_conf 99999539
No 6
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=4.2e-40 Score=279.31 Aligned_cols=157 Identities=29% Similarity=0.396 Sum_probs=142.4
Q ss_pred EEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98338998688999998689202105888860212789997399489999879840101235753210023455553210
Q gi|254780941|r 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 26 aivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii 105 (311)
||+|+||||||||+|+|+|+++|+||++|||||+++.+.++.++.|++|+||||++...+.+.+.+.+.++.+++++|++
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 01100001000000012234544287202578721101043457888864100123343110001387426789999983
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
++|+|++++....+..+++.+.+.++|+++|+||+|+++++...... .+ +++.++|||||++|.|+++|++.|.+.
T Consensus 81 l~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~~~~~~~---~~-l~~~~~i~iSA~~g~Gid~L~~~I~~~ 156 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEF---YS-LGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH---HH-CCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 99998999999899999999998479809999787165864569999---96-599975999965894999999999965
Q ss_pred C
Q ss_conf 6
Q gi|254780941|r 186 L 186 (311)
Q Consensus 186 l 186 (311)
|
T Consensus 157 L 157 (157)
T cd01894 157 L 157 (157)
T ss_pred C
T ss_conf 9
No 7
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.6e-39 Score=275.59 Aligned_cols=205 Identities=25% Similarity=0.301 Sum_probs=163.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
.|||+|+||||||||+|+|+|++.||||+.||||||++.+....++.++.|+||||+....+.+++.+...+..++++||
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~~aD 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98999999987899999987886176159899887733799999990799998989898743789999999999998679
Q ss_pred HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 10011000010000000122345442872025787211010434578888641001233431100013874267899999
Q gi|254780941|r 104 IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 104 iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~ 183 (311)
+++||+|+..++++.|.++++.+++.++|+++|+||+|..+.+.. ..+.+ .+++.++++|||.+|.|+++|++.|.
T Consensus 81 lIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~~--~~ef~--~LG~~~~i~iSA~h~~Gi~~L~~~i~ 156 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY--SLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH--HHHHH--HHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 999998577689867999999998719978999983467531456--99999--83689868874204679999999999
Q ss_pred HHCCCCCCCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 836622356896433---------430256789987599999973004564204788533
Q gi|254780941|r 184 STLPLAPWVYSADQI---------SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW 234 (311)
Q Consensus 184 ~~lpe~~~~y~~~~~---------Td~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~ 234 (311)
+.+|+.+-...++.- .+--.-.++.-++.|.. .+-.++|-.+.=.++..
T Consensus 157 ~~l~~~~~~~~~~~~~iriaivGrPNvGKSTl~N~ll~~~r--~ivs~~~GtTrD~i~~~ 214 (429)
T TIGR03594 157 ELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEER--VIVSDIAGTTRDSIDIP 214 (429)
T ss_pred HHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCCCEEEE
T ss_conf 65886655543455652699974887654677777654333--21479998631026879
No 8
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=1.9e-39 Score=275.11 Aligned_cols=168 Identities=27% Similarity=0.304 Sum_probs=150.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 21899833899868899999868920210588886021278999739948999987984010123575321002345555
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-..|||||+||||||||+|+|+|++.|||++.|||||+++.+....++.+|.++||||+....+.+++.+.+.+..++++
T Consensus 38 lPiVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ai~e 117 (474)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEVAMRT 117 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99899989999888999999868863880598998808636899999928999979999997478999999999999986
Q ss_pred HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32100110000100000001223454428720257872110104345788886410012334311000138742678999
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
||+|+||+|+..++.+.|.++++.+++.++|+++|+||+|....+.. ..+.+ .+++.++++|||.+|.|+++|++.
T Consensus 118 aD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~~~~--~~efy--~LGf~~~i~ISA~Hg~Gi~dLld~ 193 (474)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERGEAD--AAALW--SLGLGEPHPVSALHGRGVADLLDA 193 (474)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH--HHHHH--HHCCCCEEEEEHHCCCCHHHHHHH
T ss_conf 99999999689898878999999987539977998675566210234--89999--757998699602037897999999
Q ss_pred HHHHCCCCCCCC
Q ss_conf 998366223568
Q gi|254780941|r 182 LCSTLPLAPWVY 193 (311)
Q Consensus 182 L~~~lpe~~~~y 193 (311)
|.+.+|+.+...
T Consensus 194 i~~~l~~~~~~~ 205 (474)
T PRK03003 194 VLAALPEVPEVG 205 (474)
T ss_pred HHHHCCCCCCCC
T ss_conf 997487766443
No 9
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=4.7e-39 Score=272.55 Aligned_cols=163 Identities=31% Similarity=0.423 Sum_probs=145.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH-HHCCCCCCCCCCHHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399489999879840-101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~-~~~~~l~~~~~~~~~~~l~~a 102 (311)
.|||+|+||||||||+|+|+|++.||||+.||||||++.|....++.++.|+||||+. ...+.+.+.+.+.+..++++|
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~~a 82 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGFEKQMREQALLAIEEA 82 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 89998999987899999986886187159899984715899999992899998979898882079999999999999858
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21001100001000000012234544287202578721101043457888864100123343110001387426789999
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
|+++||+|+..++++.|.++++.+++.++|+++|+||+|....+.. ..+.+ .+++.++++|||.+|.|+++|++.+
T Consensus 83 DlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~~--~~ef~--~LGf~~~i~iSA~h~~Gi~~L~~~i 158 (438)
T PRK00093 83 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKMEAD--AYEFY--SLGLGEPYPISAEHGRGIGDLLDAI 158 (438)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH--HHHHH--HHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 9999998377689878999999999739978999975566320345--99999--8368981888530566989999999
Q ss_pred HHHCCCCC
Q ss_conf 98366223
Q gi|254780941|r 183 CSTLPLAP 190 (311)
Q Consensus 183 ~~~lpe~~ 190 (311)
.+.+|+.+
T Consensus 159 ~~~l~~~~ 166 (438)
T PRK00093 159 LELLPEEE 166 (438)
T ss_pred HHHCCCCC
T ss_conf 85488554
No 10
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=1.8e-38 Score=268.73 Aligned_cols=181 Identities=21% Similarity=0.218 Sum_probs=139.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC-CCCCCCCCHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012-35753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD-SYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~-~l~~~~~~~~~~~l~~a 102 (311)
.|||+|+||||||||+|+|+|++ ++||++|||||+++.|.++.++.|++|+||||++.... ...+.+.+.+ -..+++
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g~~-~~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~~e~v~~~~-~~~~~a 78 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTGAR-QHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSEEEKVARDY-LLEEKP 78 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHH-HHHCCC
T ss_conf 98998899989999999995999-6563899972333576875251679999688850146532789999999-862368
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21001100001000000012234544287202578721101043457888864100123343110001387426789999
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
|++++|+|+++. . ....+..++.+.++|+++|+||+|+++++......+.+.+.++. ++|||||++|.|+++|++.|
T Consensus 79 Dlvl~vvDa~~~-e-r~l~l~~~l~~~~~p~IvVlNK~Dl~~~~~~~~~~~~l~~~lg~-~vi~ISA~~g~Gi~eL~~~I 155 (188)
T pfam02421 79 DVIINVVDATNL-E-RNLYLTLQLLELGIPVVVALNMMDEAEKKGIKIDIKKLSELLGV-PVVPTSARKGEGIDELKDAI 155 (188)
T ss_pred CCEEEEEECCCH-H-HHHHHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHH
T ss_conf 736999767624-5-44899999997699889996170201003652039999987399-68999931699999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9836622356896433430256789987
Q gi|254780941|r 183 CSTLPLAPWVYSADQISDLPMFHFTAEI 210 (311)
Q Consensus 183 ~~~lpe~~~~y~~~~~Td~~~~~~i~Ei 210 (311)
.+.++ +...+|.+.-.|+..+..++|+
T Consensus 156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 182 (188)
T pfam02421 156 IEVAE-GKVKPPLKINYGEEIEEAISEL 182 (188)
T ss_pred HHHHH-CCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99972-6899980168988999999999
No 11
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-37 Score=263.42 Aligned_cols=165 Identities=25% Similarity=0.332 Sum_probs=125.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101235753210023455553
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
+.||||||||||||||+|+|+|++.|||++.||+||+++.+.....+.+|.++||+|+....+.+...+...+..++++|
T Consensus 280 p~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~~~F~lvDTGG~~~~~~~~~~~I~~Q~~~Ai~eA 359 (714)
T PRK09518 280 GTVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGRDFKLVDTGGWEADAEGIEAAIASQAEIAMTLA 359 (714)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 87999899987689999886288416846989988375557999999169999799999883269999999999999968
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21001100001000000012234544287202578721101043457888864100123343110001387426789999
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
|+||||||+..+.++.|.++.+.+++.++|+++|+||+|..+.+. ...+.+ .+++.+++||||.+|.|+++|++.+
T Consensus 360 DlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e~--~~~ef~--~LG~~e~~~ISA~Hg~G~~dLld~i 435 (714)
T PRK09518 360 DAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASEY--DVAEFW--KLGLGEPYSISAMHGRGVADLLDVV 435 (714)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH--HHHHHH--HCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 999999968979897899999999856998899998978876401--299999--6599996898473578989999999
Q ss_pred HHHCCCCCC
Q ss_conf 983662235
Q gi|254780941|r 183 CSTLPLAPW 191 (311)
Q Consensus 183 ~~~lpe~~~ 191 (311)
.+.+|+.+.
T Consensus 436 ~~~l~~~~~ 444 (714)
T PRK09518 436 LDSLKQHER 444 (714)
T ss_pred HHHCCCCCC
T ss_conf 965888875
No 12
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=1.7e-37 Score=262.38 Aligned_cols=162 Identities=24% Similarity=0.352 Sum_probs=135.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012---357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~~~~l~ 100 (311)
.||++|+||||||||+|+|+|+++++||++|||||+.+.+.++.++.++.|+||||+.+... .++......+++++.
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~ 83 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIE 83 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899998999999983898444349999157332899999998899985788421344210688999999999998
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH--HHHHHHHHHHC---CCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000000122345442872025787211010434--57888864100---12334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKL---VFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~--l~~~~~~~~~~---~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|+|++++....+..+++.+.+.++|+++|+||+|+++++. .....+.+.+. ..+.+++||||++|.|+
T Consensus 84 ~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g~Gi 163 (174)
T cd01895 84 RADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGV 163 (174)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCH
T ss_conf 42865899758989988999999999985998699985675267647789999999998734168992899974479899
Q ss_pred HHHHHHHHHH
Q ss_conf 6789999983
Q gi|254780941|r 176 DDVLNYLCST 185 (311)
Q Consensus 176 d~L~~~L~~~ 185 (311)
++|++.|.+.
T Consensus 164 ~~L~~~I~ei 173 (174)
T cd01895 164 DKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=263.50 Aligned_cols=161 Identities=29% Similarity=0.450 Sum_probs=144.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHH-HCCCCCCCCCCHHHHHHHH
Q ss_conf 189983389986889999986892021058888602127899973994899998798401-0123575321002345555
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~-~~~~l~~~~~~~~~~~l~~ 101 (311)
..|||+||||||||||+|+|+|+++|||++.||||||++.+.....+..|.++||+|+.. ..+.+.+.+.+.+..++++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78999899987589999887577026760699975577545069838607999789977688128999999999999976
Q ss_pred HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32100110000100000001223454428720257872110104345788886410012334311000138742678999
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
||++|||+|+..++++.|..+.+.++..++|+++|+||+|..+.+. ...+.++ +++.+++||||.+|.|+++|++.
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~--~~~efys--lG~g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE--LAYEFYS--LGFGEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH--HHHHHHH--CCCCCCEEEEHHHCCCHHHHHHH
T ss_conf 7999999848878997899999999853998899997666730456--4899986--47898268425535698999999
Q ss_pred HHHHCC
Q ss_conf 998366
Q gi|254780941|r 182 LCSTLP 187 (311)
Q Consensus 182 L~~~lp 187 (311)
+.+.+|
T Consensus 160 v~~~l~ 165 (444)
T COG1160 160 VLELLP 165 (444)
T ss_pred HHHHCC
T ss_conf 997567
No 14
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=100.00 E-value=3.1e-37 Score=260.77 Aligned_cols=154 Identities=29% Similarity=0.409 Sum_probs=133.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
.|||+|+||||||||+|+|+|+++|+||+.|+|||+.+.+.++.+++|+.|+||||++...+.++..+.+.++..+.++|
T Consensus 3 ~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~~~~~e~~~~~~~~~~i~~aD 82 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEAD 82 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99998899998999999996897334328898478632678953998899972677544457899999999986301576
Q ss_pred HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 10011000010000000122345442872025787211010434578888641001233431100013874267899999
Q gi|254780941|r 104 IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 104 iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~ 183 (311)
++++|+|+++.....+..++..+ .++|+++|+||+|++++++.... ....+++||||++|+|+++|++.|.
T Consensus 83 lil~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~~~~~~~~~-------~~~~~vi~ISA~~g~Gi~~L~~~I~ 153 (157)
T cd04164 83 LVLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLLPDSELLSL-------LAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHHHH-------CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 79999889877888899999851--47998999967601486667985-------2899779998527959999999999
Q ss_pred HHC
Q ss_conf 836
Q gi|254780941|r 184 STL 186 (311)
Q Consensus 184 ~~l 186 (311)
+.+
T Consensus 154 e~a 156 (157)
T cd04164 154 ELA 156 (157)
T ss_pred HHC
T ss_conf 972
No 15
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.2e-36 Score=256.99 Aligned_cols=171 Identities=25% Similarity=0.328 Sum_probs=144.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHH
Q ss_conf 8512189983389986889999986892021058888602127899973994899998798401012---3575321002
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLS 95 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~ 95 (311)
..++-.|||+|+||||||||+|+|+|++.++||+.||||||.+.+.++..+.++.|+||||+.+..+ .++......+
T Consensus 169 ~~~~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t 248 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRT 248 (429)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 55652699974887654677777654333214799986310268799999908999989887636642304779999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHH----HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 34555532100110000100000001223454428720257872110104345----78888641001233431100013
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERL----LEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l----~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
.++++.||++++|+|++++++.+|..++..+.+.++|+++++||+|+++++.. ...+........+.+++++||++
T Consensus 249 ~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~~ 328 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 99987447799999766588488899999898739976999972230379999999999999856236898689973457
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 874267899999836622
Q gi|254780941|r 172 GHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 172 g~Gid~L~~~L~~~lpe~ 189 (311)
|.|++.|++.+.+.....
T Consensus 329 g~gi~kl~~~i~~~~~~~ 346 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 789999999999999997
No 16
>PRK00454 engB GTPase EngB; Reviewed
Probab=100.00 E-value=1.5e-36 Score=256.36 Aligned_cols=161 Identities=20% Similarity=0.281 Sum_probs=126.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH------HHCCCCCCCCCCHH
Q ss_conf 189983389986889999986892-02105888860212789997399489999879840------10123575321002
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF------NAKDSYHKLMIRLS 95 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~------~~~~~l~~~~~~~~ 95 (311)
.-|||+|+||||||||+|+|+|++ +|+||++|||||+.. +...+.|+.|+||||+. ..+..+.+ +...+
T Consensus 25 p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i~---~~~~~~~~~lvDtpGyG~a~~~~~~~~~~~~-~i~~y 100 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLIN---FFEVNDGLRLVDLPGYGYAKVSKEEKEKWQK-LIEEY 100 (196)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEE---EEECCCCEEEEECCCCCCCCCCHHHHHHHHH-HHHHH
T ss_conf 6899984898889999999868973699747888607988---8761883389937997413277878889999-99999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH----HHHHHCCCCCCCCCCCCCC
Q ss_conf 345555321001100001000000012234544287202578721101043457888----8641001233431100013
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQA----EIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~----~~~~~~~~~~~i~~ISAk~ 171 (311)
....++.+.+++|+|+++++...|..+++.+.+.++|+++|+||+|++++.+..+.. +.+..+..+.+++||||++
T Consensus 101 l~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ISA~~ 180 (196)
T PRK00454 101 LQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGERKKLLKKVKKALARFAADPEVLLFSSLK 180 (196)
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 99623336389999716589888999999998627785999987251697899999999999976125898289996999
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 8742678999998366
Q gi|254780941|r 172 GHGCDDVLNYLCSTLP 187 (311)
Q Consensus 172 g~Gid~L~~~L~~~lp 187 (311)
|.|+++|++.|.++|+
T Consensus 181 g~GI~eL~~~I~k~Lk 196 (196)
T PRK00454 181 KTGIDELRAAIAKWLK 196 (196)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9798999999999859
No 17
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=2.4e-36 Score=255.05 Aligned_cols=174 Identities=23% Similarity=0.317 Sum_probs=145.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012---357532100234
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLSWS 97 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~~~ 97 (311)
..-.|||+|+||||||||+|+|+|+..++||+.||||||.+...++..+.++.|+||||+.+..+ .++......+.+
T Consensus 171 ~~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~ 250 (438)
T PRK00093 171 DPIKIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLK 250 (438)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 56059995588865567888765433320479998511232679998996799998989876564213788999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-----HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55553210011000010000000122345442872025787211010434-----5788886410012334311000138
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER-----LLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~-----l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+++.||++++|+||+++++.+|..++..+.+.++|+|+++||+|+++++. +...+........+.+++++||++|
T Consensus 251 ~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~g 330 (438)
T PRK00093 251 AIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALTG 330 (438)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 98644669999976658848889999999981996699997022256638999999999997561258987799851477
Q ss_pred CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7426789999983662235689
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLAPWVYS 194 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~~~~y~ 194 (311)
.|++.|++.+.+........++
T Consensus 331 ~gi~kl~~~i~~v~~~~~~ri~ 352 (438)
T PRK00093 331 QGVDKLFESILEAYESANRRIS 352 (438)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC
T ss_conf 7999999999999999605088
No 18
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=100.00 E-value=7.6e-36 Score=251.79 Aligned_cols=251 Identities=17% Similarity=0.181 Sum_probs=172.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012---357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~~~~l~ 100 (311)
.|||||+||||||||+|+|+|+..++||+.|||||+++...++.++..+.|+||+|+.+..+ .+..+....+.++++
T Consensus 454 rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~~aI~ 533 (714)
T PRK09518 454 RVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRTQAAIE 533 (714)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 58886699887899999996897588568898502305567999997899998600152443254322799999999886
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH---HHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 53210011000010000000122345442872025787211010434578---888641001233431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~---~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
.||++++|+||+++++.+|..++..+.+.++|+|+|+||+|+++++.... .++.......+.+++++||++|.|++.
T Consensus 534 ~adVvllviDA~~git~QD~~Ia~~i~~~gk~~IivvNKWDLv~~~~~~~~~~~i~~~l~~~~~apiv~iSA~~g~~v~k 613 (714)
T PRK09518 534 RCELALILFDASQPISEQDLRVMSMAVDAGRALVLAFNKWDLMDEFRRQRLEREIDTEFDRVMWAERVNISAKTGRHTNR 613 (714)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
T ss_conf 58899999867767528999999999985993799996143068668999999999756368999889996678978899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCCCCEEEEEEEEEECCCC
Q ss_conf 899999836622356896433430256789987599999973004564--204788533106677235899999827984
Q gi|254780941|r 178 VLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPY--SSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 (311)
Q Consensus 178 L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY--~~~v~v~~~~~~~~~~~~I~~~I~v~k~sq 255 (311)
|++.+.+.........+ |.+ ....+++.+..+ --|. .-.+.+-+...-. .-=-...|+|+..
T Consensus 614 l~~~i~~~~~~~~~rI~----T~~-----LN~~l~~~~~~~---ppP~~~gk~~ki~YatQ~~--~~PPtFviF~n~~-- 677 (714)
T PRK09518 614 LARAMDKALESWDQRIP----TGK-----LNAFLGKIQAEH---PHPLRGGRQPRILFATQAS--TRPPRFVLFTTGF-- 677 (714)
T ss_pred HHHHHHHHHHHHHCCCC----HHH-----HHHHHHHHHHHC---CCCCCCCCCEEEEEEECCC--CCCCEEEEEECCC--
T ss_conf 99999999999606398----899-----999999999728---9997799420389897899--9999899996999--
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 154874665889999999999999984898137899884588
Q gi|254780941|r 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 (311)
Q Consensus 256 k~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vkv~k~ 297 (311)
-.-+-.+.+-.+-|.+. .|-|.+|.+.++.|=+|+
T Consensus 678 ------l~~sY~RyLen~lRe~f-~f~G~PIri~~R~rekk~ 712 (714)
T PRK09518 678 ------LEHGYRRFLERSLREEF-GFEGSPIQISVNIREKKK 712 (714)
T ss_pred ------CCCCHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCC
T ss_conf ------99428888588899866-997787799996244445
No 19
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=100.00 E-value=1.4e-35 Score=250.15 Aligned_cols=161 Identities=28% Similarity=0.329 Sum_probs=127.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973-99489999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE-KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~-~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
.|||+|+||||||||+|+|+|++++ |++.|||||+++.|.+.. +..|++|+||||+++..+. +..+.....+.++.+
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~~-V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~-~~~l~~~~l~~i~~a 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE-GKGLGHRFLRHIERT 79 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCC-CCCHHHHHHHCCCCC
T ss_conf 5899899999899999999678760-32566652374477999369856999648864445546-622489998613345
Q ss_pred HHHCCCCHHHHHHHC--CHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 210011000010000--00012234544-----28720257872110104345788886410012334311000138742
Q gi|254780941|r 103 DIVCLVVDSHRELKV--NIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 103 Diil~VvDa~~~~~~--~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
|++++|+|++..... ....+.+.+.. .++|+++|+||+|+++++.+.+..+.+.....+.+++||||++|.|+
T Consensus 80 dvil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 61799998998789899999999999982744403865067762024283563899999998569995899975479799
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
++|+++|.+.|
T Consensus 160 ~~L~~~I~~~L 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999669
No 20
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=1.8e-35 Score=249.38 Aligned_cols=159 Identities=31% Similarity=0.398 Sum_probs=135.4
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8338998688999998689202105888860212789997399-489999879840101235753210023455553210
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii 105 (311)
|+|+||||||||+|+|+|+++++||++|+|||+.+.+.+..++ .++.|+||||+..... .+..+.+.++++++.+|++
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~-~~~~~~~~~~~~~~~~D~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG-LGREREELARRVLERADLI 79 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCEE
T ss_conf 919799899999999958996101698998656458999954786599972798522231-0168999999999868989
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0110000100000001223454428720257872110104345788---8864100123343110001387426789999
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~---~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
+||+|+++.....+..++..+...++|+++|+||+|+++++..... .........+.++++|||++|.|+++|++.|
T Consensus 80 l~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~~i 159 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99987899975566999999997197427885342067878999999999999876799859999789897999999999
Q ss_pred HHHC
Q ss_conf 9836
Q gi|254780941|r 183 CSTL 186 (311)
Q Consensus 183 ~~~l 186 (311)
.+.|
T Consensus 160 ~e~L 163 (163)
T cd00880 160 IEAL 163 (163)
T ss_pred HHHC
T ss_conf 9519
No 21
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=6.1e-35 Score=245.95 Aligned_cols=251 Identities=18% Similarity=0.181 Sum_probs=170.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHHHHHH
Q ss_conf 189983389986889999986892021058888602127899973994899998798401012---35753210023455
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLSWSTI 99 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~~~~l 99 (311)
-.|||+|+||||||||+|+|+|+..++||+.|||||+++...++.++..+.|+||+|+.+..+ .+.......+..++
T Consensus 212 ~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl~aI 291 (474)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTHAAI 291 (474)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 27999808998788999998589756745899851544058999999899999898766355334314589999999998
Q ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 5532100110000100000001223454428720257872110104345788---8864100123343110001387426
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~---~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
+.||++++|+||+++++.+|..++..+.+.++|+|+++||+|+++++..... ++.......+.++++|||++|.|++
T Consensus 292 ~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~~~~piv~ISA~~g~~i~ 371 (474)
T PRK03003 292 DAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVRWAPRVNISAKTGRAVQ 371 (474)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHH
T ss_conf 73355799985465874999999999998099579999714416867899999999864554489856999810487989
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEEECCCCCCEEEEEEEEEECCC
Q ss_conf 78999998366223568964334302567899875999999730045642--0478853310667723589999982798
Q gi|254780941|r 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS--SCVVTEKWEEKKDGSILIRQVIYVERPS 254 (311)
Q Consensus 177 ~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY~--~~v~v~~~~~~~~~~~~I~~~I~v~k~s 254 (311)
.|++.+.+...... ...-|. .....+++.+..+ --|.. -.+.+.+...-... ----.|+|+.
T Consensus 372 kL~~~i~~v~~~~~----krI~Ts-----~LN~~L~~a~~~~---ppP~~~Gk~~KikY~tQv~~~--PPtFvif~n~-- 435 (474)
T PRK03003 372 KLVPALETALESWD----TRIPTG-----RLNAWLKELVAAH---PPPVRGGKQPRILFATQASTR--PPTFVLFTTG-- 435 (474)
T ss_pred HHHHHHHHHHHHHC----CCCCHH-----HHHHHHHHHHHHC---CCCCCCCCEEEEEEEECCCCC--CCEEEEEECC--
T ss_conf 99999999999964----739879-----9999999999838---998669920258999807999--9989999699--
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 415487466588999999999999998489813789988458
Q gi|254780941|r 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 (311)
Q Consensus 255 qk~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vkv~k 296 (311)
+ -..+-.+.+--+-|+.. .|.|.++.+.++-|=+|
T Consensus 436 -~-----l~~sY~RyLen~lRe~f-~~~GvPIri~~R~r~kk 470 (474)
T PRK03003 436 -F-----LEAGYRRFLERRLRETF-GFEGSPIRINVRVREKR 470 (474)
T ss_pred -C-----CCHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCC
T ss_conf -9-----97789999999999876-98555479999616756
No 22
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=100.00 E-value=5.1e-35 Score=246.42 Aligned_cols=159 Identities=28% Similarity=0.376 Sum_probs=123.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHH-CCCCCCCCCCHHHHHHHH-
Q ss_conf 899833899868899999868920210588886021278999739948999987984010-123575321002345555-
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA-KDSYHKLMIRLSWSTIKH- 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~-~~~l~~~~~~~~~~~l~~- 101 (311)
.|||+|+||||||||+|+|+|++.+ |+++|||||+.+.|.++.++.|+.|+||||+++. ....+. +.+.+..++..
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~-v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~-ie~~~~~~l~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNT-IEMQAITALAHL 79 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHH-HHHHHHHHHHHC
T ss_conf 7999889998899999999589860-23758723574368999837276872488655674788889-999999999835
Q ss_pred HHHHCCCCHHHHHHH---CCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 321001100001000---000012234544--287202578721101043457888864100123343110001387426
Q gi|254780941|r 102 ADIVCLVVDSHRELK---VNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 102 aDiil~VvDa~~~~~---~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
+|+++||+|++.... .....+++.+.. .++|+++|+||+|+++++.+....+... . ...+++||||++|.|++
T Consensus 80 ~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~~~~~~~-~-~~~~vi~ISA~~g~Gi~ 157 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEE-L-EGEEVLKISTLTEEGVD 157 (168)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH-C-CCCCEEEEECCCCCCHH
T ss_conf 776899996887678489999999998776525888799994753458100799999997-0-89988999815896999
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
+|++.|.+.|
T Consensus 158 ~L~~~i~ell 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHC
T ss_conf 9999999963
No 23
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=5.4e-35 Score=246.27 Aligned_cols=156 Identities=24% Similarity=0.273 Sum_probs=125.2
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 83389986889999986892021058888602127899973994899998798401012-35753210023455553210
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~-~l~~~~~~~~~~~l~~aDii 105 (311)
|+|+||||||||+|+|+|++ +.||++|||||+++.|.++.++.|+.|+||||++.... ...+.+.+.+. ..+++|++
T Consensus 1 ivG~pNvGKSTL~N~L~g~~-~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~~~-~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFL-LGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHH-HHCCCCCE
T ss_conf 97989888999999995998-64617898276347889962993799997987412564135678999999-85178717
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 01100001000000012234544287202578721101043457888864100123343110001387426789999983
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
++|+|+++ . +.+..+..++...++|+++|+||+|+++++.+....+.+.+.++. +++||||++|+|+++|++.|.+.
T Consensus 79 l~vvD~~~-~-~~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~-~ii~iSA~~g~Gi~~L~~~i~el 155 (158)
T cd01879 79 VNVVDATN-L-ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEEEECCH-H-HHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99977740-6-776899999986599889994027765522546679999987199-48999877897999999999998
Q ss_pred CC
Q ss_conf 66
Q gi|254780941|r 186 LP 187 (311)
Q Consensus 186 lp 187 (311)
+.
T Consensus 156 ~~ 157 (158)
T cd01879 156 AE 157 (158)
T ss_pred HC
T ss_conf 67
No 24
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=100.00 E-value=6.7e-35 Score=245.68 Aligned_cols=159 Identities=20% Similarity=0.265 Sum_probs=124.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH--HHCCCCC---CCCCCHHHHH
Q ss_conf 9983389986889999986892-02105888860212789997399489999879840--1012357---5321002345
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--NAKDSYH---KLMIRLSWST 98 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~--~~~~~l~---~~~~~~~~~~ 98 (311)
|||+|+||||||||+|+|+|++ +++||++|||||+... + .-+.|++|+||||+. ....... ..+...+.+.
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~--~-~~~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--F-NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEE--E-EECCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899989999999999999689962786078977852058--8-5387799996578401016877999999999999984
Q ss_pred HHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH----CCCCCCCCCCCCCCCCC
Q ss_conf 55532100110000100000001223454428720257872110104345788886410----01233431100013874
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANK----LVFIEKTFMVSATKGHG 174 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~----~~~~~~i~~ISAk~g~G 174 (311)
.+.+|++++|+|++.+....+.++++.+.+.++|+++|+||+|+++++........+.+ .....++++|||++|.|
T Consensus 79 ~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~g 158 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 06334999999632237486899999998769987999986753787789999999999874217998399998899977
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
+++|++.|.++|
T Consensus 159 i~~L~~~I~~~L 170 (170)
T cd01876 159 IDELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999859
No 25
>PRK04213 GTP-binding protein; Provisional
Probab=100.00 E-value=6.1e-35 Score=245.94 Aligned_cols=160 Identities=21% Similarity=0.249 Sum_probs=121.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH--H-----HCCCCCCCCCCHHHH
Q ss_conf 998338998688999998689202105888860212789997399489999879840--1-----012357532100234
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--N-----AKDSYHKLMIRLSWS 97 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~--~-----~~~~l~~~~~~~~~~ 97 (311)
|||+||||||||||+|+|+|++++ ||++|||||+.+. .+..|++|+||||+. . ....+...+.+....
T Consensus 4 VaivGRpNVGKSTL~N~L~g~k~~-vs~~pg~Tr~~~~----~~~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (195)
T PRK04213 4 IIFVGRSNVGKSTLIRALTGKKVR-VGKRPGVTLKPNE----YDWGDFILVDLPGFGFMSGVPKKVQERIKDEIVHYIED 78 (195)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEE----EECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999769998899999999689851-3489964873458----85088999999996222458888999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHH-----------HCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHHCCC-----
Q ss_conf 555532100110000100-----------00000122345442872025787211010434-5788886410012-----
Q gi|254780941|r 98 TIKHADIVCLVVDSHREL-----------KVNIHDLLKEIAKRSSRLILILNKIDCVKPER-LLEQAEIANKLVF----- 160 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~-----------~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~-l~~~~~~~~~~~~----- 160 (311)
+.+.+|++++|+|+.... .+.|.++++.+++.++|+++|+||+|++++.+ +++......+...
T Consensus 79 ~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~~~~~~l~~i~e~~~~~~~~~~~ 158 (195)
T PRK04213 79 NADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIKNSEEVLDEIAERLGLYPPWRQW 158 (195)
T ss_pred HHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHHHHHHHHHHHCCCCHHHC
T ss_conf 88517899999957865442112344567777899999998749987999987330587788899999998257615656
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 334311000138742678999998366223
Q gi|254780941|r 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 161 ~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~ 190 (311)
++.++|+||+++ |+++|++.|.++|||..
T Consensus 159 ~~~iv~iSakk~-Gid~L~~~I~~~L~E~~ 187 (195)
T PRK04213 159 LDIIAPISAKKG-GIEALKGLINKRLREFK 187 (195)
T ss_pred CCEEEEEECCCC-CHHHHHHHHHHHCHHHC
T ss_conf 987999845779-99999999999675537
No 26
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=3.2e-34 Score=241.27 Aligned_cols=157 Identities=29% Similarity=0.406 Sum_probs=136.8
Q ss_pred CCCCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 851218-9983389986889999986892021058888602127899973994899998798401012357532100234
Q gi|254780941|r 19 NSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 19 ~~ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
..|.|+ |+|+|+||||||||+|+|+|+..||||+.||||||.+.+.+..++..+.|+||+|+.+..+.+.+.-++.+++
T Consensus 212 ~l~~G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ra~~ 291 (445)
T PRK05291 212 LLREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIERSRK 291 (445)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 86359869988999876899999985787467318999740402236899998999998997665574588999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 55553210011000010000000122345442872025787211010434578888641001233431100013874267
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
.+++||++++|+|++.+....+..++..+. ++|.++|+||+|+..+.. ....++.|||++|.|++.
T Consensus 292 ~~~~ADlil~v~D~s~~~~~~~~~~~~~~~--~~~~i~V~NK~DL~~~~~------------~~~~~i~iSak~g~Gi~~ 357 (445)
T PRK05291 292 AIEEADLVLLVLDASEPLTEEDKEILEEFK--NKPVIVVLNKADLTGEKI------------DGLPVIRISAKTGEGIDE 357 (445)
T ss_pred HHHHCCEEEEEEECCCCCCCCHHHHHHHCC--CCCEEEEEEHHHCCCCCC------------CCCCEEEEECCCCCCHHH
T ss_conf 998399999998799888722599998517--998799985120466534------------789759998378869999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 899999836622
Q gi|254780941|r 178 VLNYLCSTLPLA 189 (311)
Q Consensus 178 L~~~L~~~lpe~ 189 (311)
|++.|.+.+...
T Consensus 358 L~~~i~~~~~~~ 369 (445)
T PRK05291 358 LEEALKQLVGFQ 369 (445)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997046
No 27
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=100.00 E-value=1.5e-34 Score=243.45 Aligned_cols=140 Identities=28% Similarity=0.334 Sum_probs=116.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
|||||+||||||||+|+|+|++ ++++|+||||.. ..|+||||.+.. ++.+.+....+..+||+
T Consensus 4 VaivGrpNvGKSTLlN~L~g~~--i~~~K~qtt~~~-----------~~~IDTPG~~~~----~~~~~~~~~~~~~daDv 66 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALNGEE--LKYKKTQAIEFS-----------DNMIDTPGEYLE----NRRFYSALIVTAADADV 66 (143)
T ss_pred EEEECCCCCCHHHHHHHHCCCC--EEECCCEEEEEC-----------CCEEECCCCCCC----CHHHHHHHHHHHHHCCE
T ss_conf 9998999999999999975994--451787079855-----------748999876656----28999999999964999
Q ss_pred HCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 00110000100000001223454428720257872110104345788886410012334311000138742678999998
Q gi|254780941|r 105 VCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 (311)
Q Consensus 105 il~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~ 184 (311)
++||+|+++........+. ...++|+|+|+||+|+++++..++.++.+.+..++.++|||||.+|.|+++|+++|.+
T Consensus 67 il~vvDa~~~~~~~~~~~~---~~~~kpvIlViNKiD~~~~~~~l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~~~l~e 143 (143)
T pfam10662 67 IALVQDATEPWSVFPPGFA---SMFNKPVIGIITKIDLAKDEANIEMVEEWLNNAGAEKIFEVSAVTNEGIDELFAYLEE 143 (143)
T ss_pred EEEEEECCCCCCCCCHHHH---HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9999877886675687789---7547988999980224575667899999997589987999889899899999999749
No 28
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=236.82 Aligned_cols=163 Identities=28% Similarity=0.405 Sum_probs=142.3
Q ss_pred CCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 1218-998338998688999998689202105888860212789997399489999879840101235753210023455
Q gi|254780941|r 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 21 ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
|-|+ |+|+|+||||||||+|+|+++..||||+.||||||.+...++.++..+.++||+|+.+..+...+.-++.+++++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45864999879988679999988667866742899974103789999898899998567766673489999999999999
Q ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 55321001100001000000012234544287202578721101043457888864100123343110001387426789
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~ 179 (311)
++||+++||+|+++.....+..++. ....++|+++|+||+|+..+...... +...-..++++||++|.|++.|.
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~ 368 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALR 368 (454)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCCHH-----HCCCCCCEEEEEECCCCCHHHHH
T ss_conf 8599899997088777601177887-24368977999960211564321012-----02678826999825765799999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999836622
Q gi|254780941|r 180 NYLCSTLPLA 189 (311)
Q Consensus 180 ~~L~~~lpe~ 189 (311)
+.|.+.+...
T Consensus 369 ~~i~~~~~~~ 378 (454)
T COG0486 369 EAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHC
T ss_conf 9999998630
No 29
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=100.00 E-value=6e-34 Score=239.50 Aligned_cols=149 Identities=22% Similarity=0.252 Sum_probs=117.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH------HHCCCCCCCCCCHHH
Q ss_conf 89983389986889999986892-02105888860212789997399489999879840------101235753210023
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF------NAKDSYHKLMIRLSW 96 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~------~~~~~l~~~~~~~~~ 96 (311)
.|||+|+||||||||+|+|+|++ +++||++|||||+... ...+.++.|+||||+. +.+..+. .+...+.
T Consensus 20 ~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~---~~~~~~~~lvDtpGyG~~~~~~~~~~~~~-~~~~~~~ 95 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINF---FEVNDGFRLVDLPGYGYAKVSKEEKEKWQ-KLIEEYL 95 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCE---EEECCCEEEEECCCHHHCCCCHHHHHHHH-HHHHHHH
T ss_conf 8999869998889999998689855897089973660232---01047369997776021127888899999-9999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH----CCCCCCCCCCCCCCC
Q ss_conf 4555532100110000100000001223454428720257872110104345788886410----012334311000138
Q gi|254780941|r 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANK----LVFIEKTFMVSATKG 172 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~----~~~~~~i~~ISAk~g 172 (311)
...+.++.+++|+|++++++..|.++++.+.+.++|+++|+||+|++++++..+..+.+.+ ...+.++++|||++|
T Consensus 96 ~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA~~g 175 (179)
T TIGR03598 96 RGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSSLKK 175 (179)
T ss_pred HHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 99886430289874377998999999999997599889999781306989999999999999733668894899979998
Q ss_pred CCHH
Q ss_conf 7426
Q gi|254780941|r 173 HGCD 176 (311)
Q Consensus 173 ~Gid 176 (311)
.|+|
T Consensus 176 ~GID 179 (179)
T TIGR03598 176 TGIE 179 (179)
T ss_pred CCCC
T ss_conf 3879
No 30
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=100.00 E-value=2.3e-33 Score=235.71 Aligned_cols=158 Identities=28% Similarity=0.311 Sum_probs=122.3
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 833899868899999868920210588886021278999739-9489999879840101235753210023455553210
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii 105 (311)
|+|+||||||||+|+|+|.++ .||+.|+|||+++.|++..+ ..|++|+||||+++..+. ++.+...+.+.++++|++
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~-~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~-~~~~~~~~l~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE-GRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCC-EEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHHCCCEE
T ss_conf 969998889999999968996-030789967612467999479966999957875457337-878999999874108899
Q ss_pred CCCCHHHHHHHCCHHHHH-------HHH----------HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 011000010000000122-------345----------442872025787211010434578888641001233431100
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLL-------KEI----------AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVS 168 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il-------~~l----------~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~IS 168 (311)
++|+|+++.........+ .++ ...++|+++|+||+|+++++...+..........+.++|+||
T Consensus 79 l~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iS 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99998987655454458999999999999711566555432697199996860347003159999999746899589997
Q ss_pred CCCCCCHHHHHHHHHHHC
Q ss_conf 013874267899999836
Q gi|254780941|r 169 ATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 169 Ak~g~Gid~L~~~L~~~l 186 (311)
|++|.|+++|++.+.+.|
T Consensus 159 A~~~~gi~~L~~~i~~~L 176 (176)
T cd01881 159 AKTEEGLDELIRAIYELL 176 (176)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 778879999999999659
No 31
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=3.6e-33 Score=234.46 Aligned_cols=160 Identities=32% Similarity=0.429 Sum_probs=120.0
Q ss_pred CCCEE--EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEE-ECCEEEEEEECCCCHHH-CCCCCCCCCCHH
Q ss_conf 51218--998338998688999998689202105888860212789997-39948999987984010-123575321002
Q gi|254780941|r 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA-KDSYHKLMIRLS 95 (311)
Q Consensus 20 ~ksg~--VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~-~~~~qiifvDTPG~~~~-~~~l~~~~~~~~ 95 (311)
.|+|. |||+|+||||||||+|+|+|+++ +|++.|+|||++..+.+. .+..+++|+|||||++. .+.+-+.+ +.+
T Consensus 37 ~~~g~p~VaivG~PNvGKSTLlN~L~g~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p~~lie~~-~~t 114 (204)
T cd01878 37 KRSGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF-RST 114 (204)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHH-HHH
T ss_conf 745998799988999989999999948996-341567764576366899569977999836864467837899999-999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCC----HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 34555532100110000100000----00122345442872025787211010434578888641001233431100013
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~----~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
++.+.+||+++||+|++.+.... ...++..+...++|+++|+||+|+++++....... ....+++||||++
T Consensus 115 le~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~~~~-----~~~~~~i~ISA~~ 189 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLE-----AGRPDAVFISAKT 189 (204)
T ss_pred HHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHH-----HCCCCEEEEECCC
T ss_conf 99997398999999799853667799999999980655576078886704799575899997-----0899879998868
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 874267899999836
Q gi|254780941|r 172 GHGCDDVLNYLCSTL 186 (311)
Q Consensus 172 g~Gid~L~~~L~~~l 186 (311)
|.|+++|++.|.+.|
T Consensus 190 g~Gid~L~~~I~e~L 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHHHC
T ss_conf 949999999999559
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.98 E-value=8.7e-32 Score=225.51 Aligned_cols=167 Identities=23% Similarity=0.339 Sum_probs=142.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC---CCCCCCCCHHH
Q ss_conf 512189983389986889999986892021058888602127899973994899998798401012---35753210023
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD---SYHKLMIRLSW 96 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~---~l~~~~~~~~~ 96 (311)
...+.|||+|+||||||||+|+|+|+..++||+.|+|||+.|..-+..++..+.|+||.|+.+... ....+-+-.+.
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHH
T ss_conf 77508999927878705888775068259845999862203312589988189999877877466412426887505467
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH--HH---HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 45555321001100001000000012234544287202578721101043--45---78888641001233431100013
Q gi|254780941|r 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE--RL---LEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~--~l---~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
.+++.||++++|+||+++...+|..++..+.+.++++++|+||+|++.++ .. .+.+.....+..+..+++|||++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 67865688999998887836889999999997589749999753257851667999999999872213677279997047
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 874267899999836
Q gi|254780941|r 172 GHGCDDVLNYLCSTL 186 (311)
Q Consensus 172 g~Gid~L~~~L~~~l 186 (311)
|.|++.|.+.+.+..
T Consensus 336 ~~~i~~l~~~i~~~~ 350 (444)
T COG1160 336 GQGLDKLFEAIKEIY 350 (444)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 877278899999999
No 33
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.97 E-value=2.1e-31 Score=223.00 Aligned_cols=155 Identities=28% Similarity=0.337 Sum_probs=120.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
.|||+|+||||||||+|+|+|.+ +.|+++|+|||+++.|++..++.|+.|+||||++.... .++.+.+.+.+.+.+||
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~-~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~-~g~g~g~~~l~~~r~aD 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAA-DGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHCC
T ss_conf 59999999999999999997899-54369897875747779998998999996730024633-33206899999987589
Q ss_pred HHCCCCHHHHHHHCCH----------------------------------------------HHHHHHHH----------
Q ss_conf 1001100001000000----------------------------------------------01223454----------
Q gi|254780941|r 104 IVCLVVDSHRELKVNI----------------------------------------------HDLLKEIA---------- 127 (311)
Q Consensus 104 iil~VvDa~~~~~~~~----------------------------------------------~~il~~l~---------- 127 (311)
++++|+|+++.....+ ..++.+++
T Consensus 80 ~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~i~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99999847982667899999998605110357876257771358678604566666888999999998276764378605
Q ss_pred --------------HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf --------------428720257872110104345788886410012334311000138742678999998366
Q gi|254780941|r 128 --------------KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 128 --------------~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
...+|.++|+||+|++..+++.. + ....++++|||.+|.|+++|++.|.+.|-
T Consensus 160 ~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee~~~----~---~~~~~~i~ISA~~g~gld~L~~~I~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----L---ARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH----H---HCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7888898998735767673799997403699899998----6---46798599988889898999999999839
No 34
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.97 E-value=1.1e-30 Score=218.36 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=125.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE----------------EEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 18998338998688999998689202105888860----------------21278999739948999987984010123
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT----------------RSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT----------------r~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
-.|||+|+||||||||+|+|+++..++.+....|+ .+.....+..++.|+.|+||||.
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh------ 77 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGH------ 77 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCC------
T ss_conf 78999938994499999999715487654643100333365588885782698769999608936899989987------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHC--------
Q ss_conf 575321002345555321001100001000000012234544287202578721101043457888864100--------
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL-------- 158 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~-------- 158 (311)
..+.+.+.+++..+|++++|+||+++...++.+++..+...+.|+++++||+|++++++..+..+.+...
T Consensus 78 --~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~~~ 155 (185)
T pfam00009 78 --VDFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYGFG 155 (185)
T ss_pred --CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf --143999999986465642999867685323099999999828987999977327776769999999999988873248
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 123343110001387426789999983662
Q gi|254780941|r 159 VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 159 ~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
....+++||||++|.|+++|++.|.+++|.
T Consensus 156 ~~~~pivpiSA~~G~gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 156 GETIPVIPGSALTGEGIDTLLEALDLYLPS 185 (185)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 998869996789997989999999977859
No 35
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=99.96 E-value=7.7e-30 Score=212.91 Aligned_cols=170 Identities=28% Similarity=0.351 Sum_probs=132.1
Q ss_pred CCCCCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf 6851218-998338998688999998689202105888860212789997399489999879840101235753210023
Q gi|254780941|r 18 DNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW 96 (311)
Q Consensus 18 ~~~ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~ 96 (311)
+.-+.|+ |||||.||||||||+|+++.+.-||||+.||||||.+.+.+..+++.+-++||+|+.+..+.+.+..++...
T Consensus 220 ~~l~~g~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~~~~~~E~~GiekS~ 299 (473)
T TIGR00450 220 EKLKDGFKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILVKLLDTAGIREHADKVERLGIEKSF 299 (473)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 98408947999647887578999987622870552766883204420577746789985146751020046677689989
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCH
Q ss_conf 455553210011000010000000122345442872025787211010434578888641-0012334311000138742
Q gi|254780941|r 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~-~~~~~~~i~~ISAk~g~Gi 175 (311)
++++.||+|++|+|++++.++++..++....+.++|+++|+||.|+...++-.......+ ...+...+...+-....++
T Consensus 300 ~~i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~~nkr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (473)
T TIGR00450 300 KAIKQADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLAINKRKLELEFLVSELKLTVLLLSAKQLKIKALV 379 (473)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99860573478887478988105899999732179779997350165002344444413113457889988730656679
Q ss_pred HHHHHHHHHHCC
Q ss_conf 678999998366
Q gi|254780941|r 176 DDVLNYLCSTLP 187 (311)
Q Consensus 176 d~L~~~L~~~lp 187 (311)
+.|.++|.+..+
T Consensus 380 d~L~~~i~~~~~ 391 (473)
T TIGR00450 380 DLLTQKINAFYS 391 (473)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999998741
No 36
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.96 E-value=1.3e-29 Score=211.44 Aligned_cols=153 Identities=22% Similarity=0.303 Sum_probs=121.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEE--CCCCCCEEEEEEEEEEE-CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 899833899868899999868920210--58888602127899973-994899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSE-KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsiv--S~k~~TTr~~i~gi~~~-~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.||++|+||+|||||+|+|+|...+.+ ...+++|.+.....+.. ++.++.|+||||. +.+.+.+.+++.
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh--------~~~~~~~~~~~~ 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--------EKFIKNMLAGAG 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCH--------HHHHHHHHHHHH
T ss_conf 999992688729999999849646633333348637985468786489989999948787--------999999999874
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCC
Q ss_conf 53210011000010000000122345442872-025787211010434578888641001-----233431100013874
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAEIANKLV-----FIEKTFMVSATKGHG 174 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~~~~~~~-----~~~~i~~ISAk~g~G 174 (311)
.+|++++|+|+++++.+++.+.+..+...+.| +++|+||+|+++++......+.+.... ...+++||||++|+|
T Consensus 74 ~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~~~~~~~~pii~iSA~tG~G 153 (164)
T cd04171 74 GIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 26725899861778888899999999873887278734634257978999999999999974399998299946989829
Q ss_pred HHHHHHHHHH
Q ss_conf 2678999998
Q gi|254780941|r 175 CDDVLNYLCS 184 (311)
Q Consensus 175 id~L~~~L~~ 184 (311)
+++|++.|.+
T Consensus 154 i~eL~~~I~e 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHH
T ss_conf 9999999984
No 37
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.96 E-value=2.1e-28 Score=203.59 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=127.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC---------------CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 8998338998688999998689202105888---------------8602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV---------------QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~---------------~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
+|||+|.+|+|||||+|+|++...++.+... +.|++........++.++.|+||||.
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh-------- 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-------- 72 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCC--------
T ss_conf 989991799899999999997647235686258885057778886384132227999989989999969981--------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC---------
Q ss_conf 53210023455553210011000010000000122345442872025787211010434578888641001---------
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLV--------- 159 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~--------- 159 (311)
..+...+.+++..+|.+++||||.+++..++.+++..+...+.|+++++||+|++.+++..+..+.+...+
T Consensus 73 ~~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~ 152 (189)
T cd00881 73 EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 88999999998646856999987989987899999999976998799998971877562999999999998753210232
Q ss_pred -------CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -------23343110001387426789999983662
Q gi|254780941|r 160 -------FIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 160 -------~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
...+++|+||++|.|+++|++.+.+++|+
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~ 188 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 110125887759998886786979999999976879
No 38
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=99.95 E-value=6.6e-28 Score=200.40 Aligned_cols=191 Identities=21% Similarity=0.223 Sum_probs=145.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE-EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9983389986889999986892021058888602127899973994-899998798401012357532100234555532
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~-qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
|++||.||||||||++++++.+. -|.+.|.||..+.+|++..++. .|++.|.||+++..+. +.-+-...++.++.+.
T Consensus 162 VGLvG~PNAGKSTll~~iS~AkP-KIAdYpFTTL~PnLGvV~~~~~~~fviADIPGLIeGAs~-G~GLG~~FLrHieRt~ 239 (380)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVIADIPGLIEGAAE-GAGLGIRFLKHLERCR 239 (380)
T ss_pred CCEEECCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHC
T ss_conf 51463698861089988555897-547887533687467999469866999877755577555-8772899999987535
Q ss_pred HHCCCCHHHHH----HHCCHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCC
Q ss_conf 10011000010----00000012234544-----2872025787211010434578888641001233-43110001387
Q gi|254780941|r 104 IVCLVVDSHRE----LKVNIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGH 173 (311)
Q Consensus 104 iil~VvDa~~~----~~~~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~-~i~~ISAk~g~ 173 (311)
++++|+|++.. .-.+...+.++|.. ..+|.++|+||+|++..+...+..+.+.+.+++. ++|+|||.+++
T Consensus 240 ~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~~~~~~~~~~~~~~~~~v~~ISA~tge 319 (380)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKEIVEALGWEGPVYLISAASGE 319 (380)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 89999968877751999999999999998597660598799998854899799999999999970888887999787687
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 42678999998366223568964334302567899875999999
Q gi|254780941|r 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFL 217 (311)
Q Consensus 174 Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~ 217 (311)
|+++|+..+.+.+.+.+-.-++..-..+...+...+.-|+++..
T Consensus 320 G~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (380)
T PRK12298 320 GTKELCWDLMTFIEENPAEQAEEAEAPEKVEFMWDDYHRAQLEE 363 (380)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHH
T ss_conf 99999999999998672434200136154245711777877776
No 39
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=99.95 E-value=6.4e-28 Score=200.50 Aligned_cols=164 Identities=28% Similarity=0.323 Sum_probs=130.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399-489999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
-|++||.||||||||+|+|++.+. .|.+.|.||..+..|++..++ .++++.|+||+++..+. +.-+-...++.++.+
T Consensus 160 DVgLVG~PNaGKSTLl~~is~A~p-kIa~YpFTTl~P~lGvv~~~d~~~~~iaDiPGlIegA~~-g~GLG~~FLrHieR~ 237 (334)
T PRK12299 160 DVGLVGLPNAGKSTLISSVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE-GAGLGHRFLKHIERT 237 (334)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCC-CCCCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCC-CCCCHHHHHHHHHHC
T ss_conf 301463698746699998764764-335787300387547999468867899866743355234-777478998766534
Q ss_pred HHHCCCCHHHHHH-HCCHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100-0000012234544-----287202578721101043457888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHREL-KVNIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~-~~~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
.++++|+|++... ..+...+.+++.. ..+|.++|+||+|++.++...+..+.+.+..+ .++|+|||.+++|++
T Consensus 238 ~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~~~~~~~~~~~~~~~~-~~v~~ISA~~g~Gl~ 316 (334)
T PRK12299 238 RLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEERKEKIKELIKALG-GPVFLISAVTGEGLD 316 (334)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHH
T ss_conf 3699999799889899999999999985065536987999988106885678999999998709-968999787784999
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 78999998366223
Q gi|254780941|r 177 DVLNYLCSTLPLAP 190 (311)
Q Consensus 177 ~L~~~L~~~lpe~~ 190 (311)
+|++.+.+.|.+.+
T Consensus 317 eL~~~i~~~L~~~~ 330 (334)
T PRK12299 317 ELLRALWEFLKEQR 330 (334)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999778
No 40
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=1.3e-27 Score=198.47 Aligned_cols=154 Identities=24% Similarity=0.253 Sum_probs=114.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE---EEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 899833899868899999868920210588886021278---99973994899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR---GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~---gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|||+|+||+|||||+|+|.+.+++.. ..+++|++.-. .....++.++.|+||||... +......+..
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~~~~~-~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~--------f~~~~~~~~~ 72 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--------FTNMRARGAS 72 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCEE-ECCCCEEEECEEEEEEEECCCCEEEEEECCCCHH--------HHHHHHHHHH
T ss_conf 899994899859899999858675045-1698168715399998825887189998998167--------7999999986
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHH-----HHCCCCCCCCCCCCCCCC
Q ss_conf 532100110000100000001223454428720257872110104--3457888864-----100123343110001387
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP--ERLLEQAEIA-----NKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~--~~l~~~~~~~-----~~~~~~~~i~~ISAk~g~ 173 (311)
.+|++++|+|++++..+++.+++..+...++|+++++||+|++.. +++....... .++.++.+++|+||++|.
T Consensus 73 ~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~ 152 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCC
T ss_conf 26889999864667545899999999876997899998930898798999999999754524552898759999899998
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
|+++|++.|...+
T Consensus 153 gi~~L~~~i~~~a 165 (168)
T cd01887 153 GIDDLLEAILLLA 165 (168)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999997
No 41
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.95 E-value=6.1e-28 Score=200.63 Aligned_cols=156 Identities=28% Similarity=0.403 Sum_probs=119.2
Q ss_pred CCE--EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHH--
Q ss_conf 121--899833899868899999868920210588886021278999739-948999987984010123575321002--
Q gi|254780941|r 21 RSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLS-- 95 (311)
Q Consensus 21 ksg--~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~-- 95 (311)
++| .||+||.||||||||+|+|+|.++- +.+++.+|.++..+.+..+ +.+++++||+||++ .+...+....
T Consensus 186 ~~~~p~ValVGYTNAGKSTL~n~Lt~~~~~-~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~---~LP~~Li~aF~s 261 (351)
T TIGR03156 186 RAGVPTVALVGYTNAGKSTLFNALTGADVY-AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR---DLPHELVAAFRA 261 (351)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCEEECCCCCCEEECCCCCEEEEEECCCHHH---HCCHHHHHHHHH
T ss_conf 349976999667887789999998517764-1034313536732048879997699981500563---088679999999
Q ss_pred -HHHHHHHHHHCCCCHHHHHHHCC----HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -34555532100110000100000----0012234544287202578721101043457888864100123343110001
Q gi|254780941|r 96 -WSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 96 -~~~l~~aDiil~VvDa~~~~~~~----~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
.+.+.+||++++|+|++++.... ...+++.+.-.++|+|+|+||+|+++.+...... . .+.+.++|||+
T Consensus 262 TLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~~~~~----~--~~~~~v~ISA~ 335 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRIERLE----E--GYPEAVFVSAK 335 (351)
T ss_pred HHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHHHHHH----H--CCCCEEEEECC
T ss_conf 99999859899998058884789999999999997699999889999670158957789987----3--79987999689
Q ss_pred CCCCHHHHHHHHHHHC
Q ss_conf 3874267899999836
Q gi|254780941|r 171 KGHGCDDVLNYLCSTL 186 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~l 186 (311)
+|.|++.|++.|.+.|
T Consensus 336 ~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 336 TGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 9989999999999559
No 42
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.95 E-value=7.3e-28 Score=200.13 Aligned_cols=180 Identities=23% Similarity=0.275 Sum_probs=141.8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC--CCCCCCCHHHHHHHHHHHHC
Q ss_conf 3899868899999868920210588886021278999739948999987984010123--57532100234555532100
Q gi|254780941|r 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS--YHKLMIRLSWSTIKHADIVC 106 (311)
Q Consensus 29 G~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~--l~~~~~~~~~~~l~~aDiil 106 (311)
|.||||||||+|+|+|.+.. |++-||+|-++-.|.....+.|+.|||+||+|+-... .++...+ .+-.-+++|+|+
T Consensus 1 GNPNVGKStlFN~LTG~~~~-vGNwPG~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~-dyl~~e~~DLv~ 78 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGANQK-VGNWPGVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVAR-DYLLNEKPDLVV 78 (733)
T ss_pred CCCCCHHHHHHHHHHCCCEE-EEECCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHH-HHHHCCCCCEEE
T ss_conf 99981589999874158707-8735887078778897524627899844873005899874279998-997538996799
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 1100001000000012234544287202578721101043457888864100123343110001387426789999983-
Q gi|254780941|r 107 LVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST- 185 (311)
Q Consensus 107 ~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~- 185 (311)
.||||+. ++ ....+.-++.+.+.|.|+++|++|.++++.+.-..+.+++.++. +++|+||..|.|+++|++.|.+-
T Consensus 79 nVVDA~n-LE-RnL~LTLQL~E~G~p~i~~LN~~DeA~k~GI~Id~~~Lee~LGv-PVv~~~A~~g~G~~~L~~~i~~v~ 155 (733)
T TIGR00437 79 NVVDASN-LE-RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGV-PVVPTSATEGRGIEELKDAIREVA 155 (733)
T ss_pred EEECHHH-HH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECHHHHHHHCCC-CEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 9725667-77-89999999997162585687267899772963125777543386-525653210577899999999986
Q ss_pred ----CCC-CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----662-2356896433430256789987599
Q gi|254780941|r 186 ----LPL-APWVYSADQISDLPMFHFTAEITRE 213 (311)
Q Consensus 186 ----lpe-~~~~y~~~~~Td~~~~~~i~EiIRE 213 (311)
+|+ -++-..+...+..+.+..+.|++||
T Consensus 156 ~~K~~~~~~~Y~l~~~~~~~~~~~~~a~~~~~~ 188 (733)
T TIGR00437 156 DKKKLSRLIEYGLRYKAIKLIELKKRAIEIVPE 188 (733)
T ss_pred HCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 105631576507862455420244467675112
No 43
>KOG1191 consensus
Probab=99.94 E-value=1.6e-27 Score=197.85 Aligned_cols=192 Identities=25% Similarity=0.296 Sum_probs=139.8
Q ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHH-HCCCCCCCCCCHH
Q ss_conf 685121-89983389986889999986892021058888602127899973994899998798401-0123575321002
Q gi|254780941|r 18 DNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMIRLS 95 (311)
Q Consensus 18 ~~~ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~-~~~~l~~~~~~~~ 95 (311)
+.-++| .|||+|+||||||||+|+|.++.++|||+.||||||.+...++..+..+.++||+|+.+ ..+.....-+..+
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 77635772899769987788999887507744767899964100122763087589997341310026870677768999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH------------CCCCCEEEEEECCCHHHHHHHHH--HHHHH-HCCC
Q ss_conf 345555321001100001000000012234544------------28720257872110104345788--88641-0012
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------------RSSRLILILNKIDCVKPERLLEQ--AEIAN-KLVF 160 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~------------~~~p~IiVlNKiDlv~~~~l~~~--~~~~~-~~~~ 160 (311)
..++..||++++|+|+.......+..+.+.+.. ...|++++.||+|+..+-.-... ..... ...+
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~ 422 (531)
T KOG1191 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS 422 (531)
T ss_pred HHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf 98876547799996330033325328999988742555897044434623788610221576644567740023533576
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3343-1100013874267899999836-----622356896433430256789987599999
Q gi|254780941|r 161 IEKT-FMVSATKGHGCDDVLNYLCSTL-----PLAPWVYSADQISDLPMFHFTAEITREKLF 216 (311)
Q Consensus 161 ~~~i-~~ISAk~g~Gid~L~~~L~~~l-----pe~~~~y~~~~~Td~~~~~~i~EiIREki~ 216 (311)
..++ ..+|+++++|++.|.+.|.+.+ +++.| +...+. -.+.|+.|-|..
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~---~~t~~~----~r~~~~~r~~~~ 477 (531)
T KOG1191 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSA---PPTLSQ----KRIKELLRTCAA 477 (531)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHCC----HHHHHHHHHHHH
T ss_conf 6633788641200448999999999998751687788---410123----357788776543
No 44
>PRK11058 putative GTPase HflX; Provisional
Probab=99.94 E-value=9.8e-26 Score=186.38 Aligned_cols=203 Identities=23% Similarity=0.254 Sum_probs=135.6
Q ss_pred CCE--EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 121--8998338998688999998689202105888860212789997399-4899998798401012357532100234
Q gi|254780941|r 21 RSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 21 ksg--~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
|+| .||+||.+|||||||+|+|++..+- +.++..+|-++....+..++ .++++.||.||++ .+...++....+
T Consensus 194 ~~~~~~ValVGYTNAGKSTL~n~Lt~~~v~-~~d~LFATLD~t~R~~~l~~~~~~lltDTVGFI~---~LP~~LveAF~s 269 (426)
T PRK11058 194 KADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR---HLPHDLVAAFKA 269 (426)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHH---HCCHHHHHHHHH
T ss_conf 069976999735777789998777528876-3254501478620267869998699971506665---198999999999
Q ss_pred H---HHHHHHHCCCCHHHHHHHC----CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5---5553210011000010000----00012234544287202578721101043457888864100123343110001
Q gi|254780941|r 98 T---IKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 98 ~---l~~aDiil~VvDa~~~~~~----~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
+ +.+||++++|+|++++... ....+++.+.-.++|.++|+||+|+++... ....... .++...++|||+
T Consensus 270 TLeEv~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~--~~~~~~~--~~~p~~V~iSA~ 345 (426)
T PRK11058 270 TLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--PRIDRDE--ENKPIRVWLSAQ 345 (426)
T ss_pred HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHH--HHHHHHH--CCCCCEEEEECC
T ss_conf 999996398899998499937999999999999975999997799997702389644--5566653--399877999789
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEE
Q ss_conf 387426789999983662235689643343025678998759999997300456420478853310667723589999
Q gi|254780941|r 171 KGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~I 248 (311)
+|.|++.|.+.|.+.++..--.+ ... .|.. +..+..++++ ...|.-+.+ .++|.+.+.+.+
T Consensus 346 tg~Gi~~L~~~I~~~L~~~~~~~--~l~--iP~~-------~g~l~a~l~~----~g~V~~e~y--~e~G~~~l~vrl 406 (426)
T PRK11058 346 TGAGIPLLFQALTERLSGEVAQH--TLR--LPPQ-------EGRLRSRFYQ----LQAIEKEWM--EEDGSVSLQVRM 406 (426)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEE--EEE--ECHH-------HHHHHHHHHH----CCEEEEEEE--CCCCCEEEEEEE
T ss_conf 99899999999998703376899--999--7865-------2289999983----593899998--799809999997
No 45
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.93 E-value=7.7e-26 Score=187.04 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=129.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC-----CCCCCCCCCHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101-----2357532100234
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-----DSYHKLMIRLSWS 97 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~-----~~l~~~~~~~~~~ 97 (311)
-.||++|.||+|||||+|+|+|.+ ..|++-||+|.++-.|.+..++.++.++|+||.++-. ..+.+. .+.+
T Consensus 4 i~IALvGNPN~GKSTLFN~LTG~~-q~VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~---Var~ 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACH 79 (772)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHH---HHHH
T ss_conf 569988899878999999986899-835789976474238999968946999979977869999977773089---9999
Q ss_pred HH--HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 55--5532100110000100000001223454428720257872110104345788886410012334311000138742
Q gi|254780941|r 98 TI--KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 98 ~l--~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
.+ ++.|+++.|+||++- +....+.-++.+.+.|+++++|++|.+++..+.-..+.+++.++. +++|+||.+|.|+
T Consensus 80 ~ll~~~pDvvvnVvDAtnL--eRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls~~LGv-PVV~~~A~~g~Gi 156 (772)
T PRK09554 80 YILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGRGI 156 (772)
T ss_pred HHHCCCCCEEEEEEECCCH--HHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHHHHHCC-CEEEEEECCCCCH
T ss_conf 8613999899998016875--442899999997499989998779989887793289999998589-9899982788799
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
++|++.+.+..
T Consensus 157 ~eL~~ai~~~~ 167 (772)
T PRK09554 157 EALKLAIDRYK 167 (772)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999752
No 46
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=99.93 E-value=1.2e-25 Score=185.75 Aligned_cols=164 Identities=24% Similarity=0.216 Sum_probs=126.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
-|+|||.||||||||++++++.+- -+.+.|.||..+.+|++..++.+|++.|.||+++..+. ++-+-...++.++.|-
T Consensus 161 DVGLvG~PNaGKSTLl~~iS~Akp-kIA~YpFTTL~PnLGvv~~~d~~f~iADiPGLIeGAs~-g~GLG~~FLRHieR~~ 238 (495)
T PRK12296 161 DVGLVGFPSAGKSSLISAISAAKP-KIADYPFTTLVPNLGVVSAGDHTFTVADVPGLIPGASE-GRGLGLDFLRHIERCA 238 (495)
T ss_pred CCCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCC-CCCCHHHHHHHHHHCC
T ss_conf 311011899961589988754887-65787755457546789707952899856643465003-8984399999875254
Q ss_pred HHCCCCHHHHHH-----HCCHHHHHHHHHH--------------CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 100110000100-----0000012234544--------------287202578721101043457888864100123343
Q gi|254780941|r 104 IVCLVVDSHREL-----KVNIHDLLKEIAK--------------RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT 164 (311)
Q Consensus 104 iil~VvDa~~~~-----~~~~~~il~~l~~--------------~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i 164 (311)
++++|+|++... -.+...+..+|.. ..+|-|+|+||+|+.+.+.+.+......+..+ .++
T Consensus 239 vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp~a~e~~e~~~~~l~~~g-~~V 317 (495)
T PRK12296 239 VLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEERG-WPV 317 (495)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCE
T ss_conf 7999996887666789699999999999971914304433232101965999966567576999999999998749-957
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 11000138742678999998366223
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~lpe~~ 190 (311)
|+|||.+++|+++|+..+.+.+++.+
T Consensus 318 f~ISA~t~eGl~eL~~~l~elv~~~~ 343 (495)
T PRK12296 318 FEVSTVTREGLRPLSFALAELVSAAR 343 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 99864100389999999999998562
No 47
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=99.93 E-value=1.2e-25 Score=185.70 Aligned_cols=164 Identities=26% Similarity=0.269 Sum_probs=124.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 899833899868899999868920210588886021278999739-9489999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
-|++||.||||||||++++++.+. -+.+.|.||..+..|++..+ +.++++.|.||+++..+. ++-+-...++.++.+
T Consensus 160 DVGLvG~PNaGKSTll~~is~A~p-kIa~YpFTTl~P~lGvv~~~~~~~~~iADiPGLIeGA~~-g~GLG~~FLrHieR~ 237 (429)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADLPGLIEGASE-GVGLGHQFLRHIERT 237 (429)
T ss_pred CCCEEECCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHC
T ss_conf 763364799845789988754897-557877402576666898569866999626745677446-888668888876624
Q ss_pred HHHCCCCHHHHH----HHCCHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 210011000010----00000012234544-----287202578721101043457888864100123343110001387
Q gi|254780941|r 103 DIVCLVVDSHRE----LKVNIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 103 Diil~VvDa~~~----~~~~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
.++++|+|++.. +-.+...+..++.. ..+|.++|+||+|+...+..++....... .-.++|+|||.+++
T Consensus 238 ~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~--~~~~i~~iSa~t~e 315 (429)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEAEENLEEFKEKLA--KGKKVFPISALTKQ 315 (429)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH--CCCCEEEEECCCCC
T ss_conf 6799999787877779899999999999986898726966999976458576999999999753--46978999684451
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 426789999983662235
Q gi|254780941|r 174 GCDDVLNYLCSTLPLAPW 191 (311)
Q Consensus 174 Gid~L~~~L~~~lpe~~~ 191 (311)
|+++|+..+.+.+.+.+.
T Consensus 316 gl~~l~~~i~~~l~~~~~ 333 (429)
T PRK12297 316 GLDELLYAIAELLEKTPP 333 (429)
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 999999999999985712
No 48
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2e-25 Score=184.33 Aligned_cols=167 Identities=25% Similarity=0.272 Sum_probs=134.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC-CCCCCCCCCHHHHHH--H
Q ss_conf 8998338998688999998689202105888860212789997399489999879840101-235753210023455--5
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTI--K 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~-~~l~~~~~~~~~~~l--~ 100 (311)
.||++|.||||||||+|+|+|.+. .|++-||+|.++-.|.+...+.++.++|+||.++-. ...++. .+.+.+ +
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~---Var~~ll~~ 80 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEK---VARDFLLEG 80 (653)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-EECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHH---HHHHHHHCC
T ss_conf 389856998548999999856674-6547898069987889973585489986897565888992089---999998638
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 53210011000010000000122345442872025787211010434578888641001233431100013874267899
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~ 180 (311)
..|+++.|+||++- +....+.-++.+.+.|+++++|++|..++..+.-..+.+++.++. +++|+||++|.|+++|++
T Consensus 81 ~~D~ivnVvDA~nL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~Id~~~L~~~LGv-PVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 81 KPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELKR 157 (653)
T ss_pred CCCEEEEEECCCHH--HHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCC-CEEEEEECCCCCHHHHHH
T ss_conf 99889996023237--777899999998599859996127568864971269999998689-889987305889799999
Q ss_pred HHHHHCCCCC----CCCCCCC
Q ss_conf 9998366223----5689643
Q gi|254780941|r 181 YLCSTLPLAP----WVYSADQ 197 (311)
Q Consensus 181 ~L~~~lpe~~----~~y~~~~ 197 (311)
.+.+..+... ..|+++.
T Consensus 158 ~i~~~~~~~~~~~~~~y~~~i 178 (653)
T COG0370 158 AIIELAESKTTPREVDYGEEI 178 (653)
T ss_pred HHHHHCCCCCCCCCCCCCHHH
T ss_conf 998743255644225542677
No 49
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=184.97 Aligned_cols=182 Identities=19% Similarity=0.184 Sum_probs=131.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH
Q ss_conf 77765410143324368512189983389986889999986892-02105888860212789997399489999879840
Q gi|254780941|r 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 (311)
Q Consensus 3 ~~e~~~~~~~~~~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~ 81 (311)
++++.......+..|++. -.=||++||+|||||||+|+|+|++ +|-||.+||.||......+ +.++.|||.||+.
T Consensus 6 ~~~f~~sa~~~~~~P~~~-~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYG 81 (200)
T COG0218 6 KAKFITSAPDIKQYPEDD-LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYG 81 (200)
T ss_pred CCEEEEECCCHHHCCCCC-CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEE---CCCEEEEECCCCC
T ss_conf 327898027775689988-967999816866689999999678635565799985423679983---5857998179954
Q ss_pred HHC-----CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 101-----235753210023455553210011000010000000122345442872025787211010434578888641
Q gi|254780941|r 82 NAK-----DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIAN 156 (311)
Q Consensus 82 ~~~-----~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~ 156 (311)
-.+ ...-..+...+.+.-.+...+++++|+.+.....|.++++.+...+.|+++|+||+|++++....+......
T Consensus 82 yAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~ 161 (200)
T COG0218 82 YAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVA 161 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 03289999999999999999635222489999978999868799999999975998699997110377467888999999
Q ss_pred ----HCCCCCC-CCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf ----0012334-3110001387426789999983662
Q gi|254780941|r 157 ----KLVFIEK-TFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 157 ----~~~~~~~-i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
....+.. ++..|+.++.|+++|...|.+.+.+
T Consensus 162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9846898866439998654544899999999998640
No 50
>KOG1489 consensus
Probab=99.91 E-value=2.7e-24 Score=177.07 Aligned_cols=159 Identities=30% Similarity=0.293 Sum_probs=123.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE-EEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 899833899868899999868920210588886021278999739948-9999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~q-iifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
.|++||.||||||||+|+|...|- .|.+.+.||-++..|.++.++++ +.+.|.||+++..+ +|+-|--..+..++.|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh-~nkGlG~~FLrHiER~ 275 (366)
T KOG1489 198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH-MNKGLGYKFLRHIERC 275 (366)
T ss_pred CCCEECCCCCCHHHHHHHHHCCCC-CCCCCCEEEECCCCCEEECCCCCEEEECCCCCCCCCCC-CCCCCCHHHHHHHHHH
T ss_conf 543212898867889877640587-54554203444641125135451468504765344543-4676548999988753
Q ss_pred HHHCCCCHHHHHH----HCCHHHHHHHHH-----HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2100110000100----000001223454-----4287202578721101043457888864100123343110001387
Q gi|254780941|r 103 DIVCLVVDSHREL----KVNIHDLLKEIA-----KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 103 Diil~VvDa~~~~----~~~~~~il~~l~-----~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
++++||+|.+.+. ......+..++. -..+|.++|.||+|+.+.+.- .++.+.+.+.-..|||+||++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~--~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN--LLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH--HHHHHHHHCCCCCEEEEEECCCC
T ss_conf 3489999778755588789999999999998654235853899744673667888--99999987379817876400464
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
|+++|++.|...+
T Consensus 354 gl~~ll~~lr~~~ 366 (366)
T KOG1489 354 GLEELLNGLRELL 366 (366)
T ss_pred CHHHHHHHHHHCC
T ss_conf 5688998776309
No 51
>COG2262 HflX GTPases [General function prediction only]
Probab=99.91 E-value=3e-24 Score=176.80 Aligned_cols=161 Identities=33% Similarity=0.418 Sum_probs=118.2
Q ss_pred CCEE--EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 1218--99833899868899999868920210588886021278999739-94899998798401012357532100234
Q gi|254780941|r 21 RSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 21 ksg~--VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
|+|+ |+++|.+|||||||+|+|++..+- +-++-.+|-++..-.+..+ +.++++.||-||+. .+...++....+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~---~LP~~LV~AFks 264 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR---DLPHPLVEAFKS 264 (411)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHCCCEE-CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCC---CCCHHHHHHHHH
T ss_conf 169975898732344499999887245713-0466642105740489807996499865756715---598679999999
Q ss_pred HH---HHHHHHCCCCHHHHHHHC----CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 55---553210011000010000----00012234544287202578721101043457888864100123343110001
Q gi|254780941|r 98 TI---KHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 98 ~l---~~aDiil~VvDa~~~~~~----~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
++ .+||++++|||++++... ....++..+.-...|+|+|+||+|++.+...+..+.... + ..++|||+
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~---~--~~v~iSA~ 339 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS---P--NPVFISAK 339 (411)
T ss_pred HHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCC---C--CEEEEEEC
T ss_conf 898762277799974068851899999999999974889997899976410157322234566348---9--74899806
Q ss_pred CCCCHHHHHHHHHHHCCCCC
Q ss_conf 38742678999998366223
Q gi|254780941|r 171 KGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~lpe~~ 190 (311)
+|.|++.|++.|.+.++...
T Consensus 340 ~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 340 TGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 67598999999999863124
No 52
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=172.96 Aligned_cols=156 Identities=31% Similarity=0.371 Sum_probs=120.7
Q ss_pred CCE--EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 121--899833899868899999868920210588886021278999739948999987984010123575321002345
Q gi|254780941|r 21 RSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 21 ksg--~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
||| .|++||+||||||||+|+|+|.+ |-+.+.|.||..++-|++.+++.||-++|+||++.... .++-+-+.+.++
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~vPG~l~Y~ga~IQild~Pgii~gas-~g~grG~~vls~ 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS-SGRGRGRQVLSV 137 (365)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCEECCCCCCEEEECCCEEEEECCCCCCCCCC-CCCCCCCEEEEE
T ss_conf 2577389997688745899998876887-64345674102445744754781699972763125765-688876465465
Q ss_pred HHHHHHHCCCCHHHHHHHCCHHHHHHHHHH--------------------------------------------------
Q ss_conf 555321001100001000000012234544--------------------------------------------------
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAK-------------------------------------------------- 128 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~~il~~l~~-------------------------------------------------- 128 (311)
+..||++++|+|+...... ...+..++..
T Consensus 138 ~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred ECCCCEEEEEEECCCCHHH-HHHHHHHHHHCCEEECCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 2158889999716888248-899999998567682179996599995259879804545666899999999997283630
Q ss_pred ---------------------CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf ---------------------2872025787211010434578888641001233431100013874267899999836
Q gi|254780941|r 129 ---------------------RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 129 ---------------------~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
..+|.+.|+||+|+...+.+....+. + +.+++||+++.|+++|++.|.+.|
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~----~---~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK----P---NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEEEECCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHC----C---CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69994688689999998416213236899952556687889999734----5---628986556879889999999874
No 53
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=170.86 Aligned_cols=165 Identities=26% Similarity=0.260 Sum_probs=124.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE-CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973-99489999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE-KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~-~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
-|++||.||||||||+|++...|- -+.+.|.||..+.+|++.. ++..|++.|.||+++.... +.-+--..+..++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~-G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASE-GVGLGLRFLRHIERT 238 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHH
T ss_conf 114125898857989988860688-544886530247530799648860799347532356446-887638888788865
Q ss_pred HHHCCCCHHHHHH----HCCHHHHHHHHHH-----CCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2100110000100----0000012234544-----287202578721101-04345788886410012334311000138
Q gi|254780941|r 103 DIVCLVVDSHREL----KVNIHDLLKEIAK-----RSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 103 Diil~VvDa~~~~----~~~~~~il~~l~~-----~~~p~IiVlNKiDlv-~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
-++++|+|.+... -.+...+..++.. .++|.++|+||+|+. ..+.+....+.+.+...+....+|||.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred HEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHCC
T ss_conf 15479985676567798999999999999857775358569998555776678999999999987408876315543102
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 742678999998366223
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~~ 190 (311)
+|+++|...+.+.+.+.+
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 487999999999999756
No 54
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=99.90 E-value=1.6e-23 Score=172.10 Aligned_cols=117 Identities=28% Similarity=0.334 Sum_probs=94.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE----EEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9983389986889999986892021058888602127899973994----899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES----QIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~----qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|+|||.||||||||||++++.|. -|.+.|.||-.+.+|++..++. +|++.|.||+++..+. +.-|--..+..++
T Consensus 161 VGLvGfPNAGKSTLLs~~S~AkP-KiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~-G~GLG~~FLKHIE 238 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAKP-KIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASE-GKGLGHKFLKHIE 238 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-EECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHC-CCCCCHHHHHHHH
T ss_conf 21035788746888888762788-223878745653112898748741688999856861566626-8875335545752
Q ss_pred HHHHHCCCCHHHHH-----HHC----CHHHHHHHHHH-----CCCCCEEEEEECCCH
Q ss_conf 53210011000010-----000----00012234544-----287202578721101
Q gi|254780941|r 101 HADIVCLVVDSHRE-----LKV----NIHDLLKEIAK-----RSSRLILILNKIDCV 143 (311)
Q Consensus 101 ~aDiil~VvDa~~~-----~~~----~~~~il~~l~~-----~~~p~IiVlNKiDlv 143 (311)
.|-+++||||++.. ... +...+.++|.. .++|.|+|+||||+.
T Consensus 239 Rt~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~ 295 (296)
T TIGR02729 239 RTRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLL 295 (296)
T ss_pred HEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCC
T ss_conf 026688798068753424289888999999999997508736278079998606778
No 55
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=1.1e-22 Score=166.58 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=113.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC--------------CCEEEEEEEE--EE---ECCEEEEEEECCCCHHHC
Q ss_conf 8998338998688999998689202105888--------------8602127899--97---399489999879840101
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV--------------QTTRSIVRGI--VS---EKESQIVFLDTPGIFNAK 84 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~--------------~TTr~~i~gi--~~---~~~~qiifvDTPG~~~~~ 84 (311)
+||++|.+++|||||+++|+...-++...-. +-|.+..... +. ...+++.|+||||.
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh---- 77 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH---- 77 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCC----
T ss_conf 5999948998989999999998599541457324416517678638668743368884136787148999989986----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHHHHCCCCC
Q ss_conf 2357532100234555532100110000100000001223454428720257872110104--34578888641001233
Q gi|254780941|r 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP--ERLLEQAEIANKLVFIE 162 (311)
Q Consensus 85 ~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~--~~l~~~~~~~~~~~~~~ 162 (311)
..+...+.+++.-+|.+++||||.+++..+..+.+..+...+.|+++++||+|+... +++.+.++.... +...
T Consensus 78 ----~dF~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g-~~~~ 152 (179)
T cd01890 78 ----VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG-LDPS 152 (179)
T ss_pred ----CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC-CCCC
T ss_conf ----45177898899754427899864778737489999999876998899986555677899999999999868-8976
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 43110001387426789999983662
Q gi|254780941|r 163 KTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 163 ~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
+++|+||++|.|+++|++.|.+++|+
T Consensus 153 ~~v~vSA~~g~gv~~Ll~~i~~~ip~ 178 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 74884378897989999999964889
No 56
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.87 E-value=1.3e-22 Score=166.16 Aligned_cols=106 Identities=33% Similarity=0.436 Sum_probs=97.3
Q ss_pred CHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 68899999868920210588886021278999739948999987984010123575321002345555321001100001
Q gi|254780941|r 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 (311)
Q Consensus 34 GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~ 113 (311)
|||||+|+|+|+++++||++|||||+...+.++.++.|+.|+||||+..........+...+++++..+|++++|+|+++
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~~~~~~~~~~~~~~~~d~il~viD~~~ 80 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKGEGELGNRTLEAIEEADLILHVVDASE 80 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 91279999978885555288998846355899889988999837873226504678889999972345737999999999
Q ss_pred HHHCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 00000001223454428720257872
Q gi|254780941|r 114 ELKVNIHDLLKEIAKRSSRLILILNK 139 (311)
Q Consensus 114 ~~~~~~~~il~~l~~~~~p~IiVlNK 139 (311)
+....+.++++.+...++|+++|+||
T Consensus 81 ~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 81 GLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99989999999999869988999939
No 57
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=99.87 E-value=1.7e-21 Score=158.91 Aligned_cols=158 Identities=23% Similarity=0.309 Sum_probs=117.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 851218998338998688999998689202105888-8602127899973994899998798401012357532100234
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~-~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
.+|+..|+|+|.-+.||+||+.+|-+.+++. .-+ +-|.+.=-..++.++..++|+||||. . .|...-.+
T Consensus 114 ~~R~PvVtimGHVDHGKTsLLD~iR~t~V~~--~EaGGITQhIGA~~v~~~~~~itFiDTPGH-e-------AFt~mR~R 183 (610)
T PRK12312 114 EKRPPIVTIMGHVDHGKTTLLDTIRKTNVVA--SEAGGITQHIGAYQVEYQGKKITFIDTPGH-E-------AFTEMRAR 183 (610)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCEECEEEEEECCCEEEEECCCCH-H-------HHHHHHHC
T ss_conf 7889989996772577225889985486413--467766440044999867976899728967-9-------89999970
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHH----HHHCCCCCCCCCCCCCC
Q ss_conf 55553210011000010000000122345442872025787211010--4345788886----41001233431100013
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEI----ANKLVFIEKTFMVSATK 171 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~----~~~~~~~~~i~~ISAk~ 171 (311)
...-+|++++||+|+++..++..+.++.++..+.|+|+++||+|+.. .+.+...... ...|.+...++||||++
T Consensus 184 Ga~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSAkt 263 (610)
T PRK12312 184 GAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSALK 263 (610)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf 77654579999975789774269999999975998899850446788987899999987076678857944599903687
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 874267899999836
Q gi|254780941|r 172 GHGCDDVLNYLCSTL 186 (311)
Q Consensus 172 g~Gid~L~~~L~~~l 186 (311)
|.|+++|++.|.-.+
T Consensus 264 g~GId~LLe~IlL~A 278 (610)
T PRK12312 264 NEGIDELLDSILLLA 278 (610)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 989999999999999
No 58
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=5.3e-21 Score=155.73 Aligned_cols=164 Identities=26% Similarity=0.345 Sum_probs=122.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHH-HCCCCCCCCCCHHHHHHHH
Q ss_conf 189983389986889999986892021058888602127899973994899998798401-0123575321002345555
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~-~~~~l~~~~~~~~~~~l~~ 101 (311)
-.|.|.|.||||||||++++++.+.- |.+.|.||.....|-...+...+-++||||+.+ +-...|..-. .|..++..
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~-qAi~AL~h 246 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER-QAILALRH 246 (346)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHCHHHH-HHHHHHHH
T ss_conf 73898569987589999887548976-67888533654676550487058984288645788577368999-99999997
Q ss_pred -HHHHCCCCHHHHHHHCCHH---HHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf -3210011000010000000---12234544-287202578721101043457888864100123343110001387426
Q gi|254780941|r 102 -ADIVCLVVDSHRELKVNIH---DLLKEIAK-RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 102 -aDiil~VvDa~~~~~~~~~---~il~~l~~-~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
.++|+|++|.+....-... .+++++.. .+.|+++|+||+|....+.+.+........ +..+...+|+..+-+++
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 325 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEE-GGEEPLKISATKGCGLD 325 (346)
T ss_pred HCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEEHHHHH
T ss_conf 42858999768500289999999999999985388769997410124666789999998763-26554313543000178
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 7899999836622
Q gi|254780941|r 177 DVLNYLCSTLPLA 189 (311)
Q Consensus 177 ~L~~~L~~~lpe~ 189 (311)
.+.+.+...+-+.
T Consensus 326 ~~~~~v~~~a~~~ 338 (346)
T COG1084 326 KLREEVRKTALEP 338 (346)
T ss_pred HHHHHHHHHHHCH
T ss_conf 8999998875021
No 59
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=7.4e-21 Score=154.79 Aligned_cols=150 Identities=21% Similarity=0.293 Sum_probs=104.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101235753210023455553
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
-.|.++|.+|||||||+|++.+...+.++|..+.+ ...+..++.++.|.||||- +.+.......+.+|
T Consensus 15 ~KililG~~~sGKTsll~~l~~~~~~~~~pT~G~~----~~~~~~~~~~l~iwD~~G~--------e~~~~~~~~y~~~a 82 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQ--------KTLRPYWRNYFEST 82 (173)
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCC--------CCCCHHHHHHHCCC
T ss_conf 18999989997889999998399989726705777----8999989999999966886--------02005899972266
Q ss_pred HHHCCCCHHHHHHHCC-H----HHHHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2100110000100000-0----01223454428720257872110104---34578888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-I----HDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~----~~il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
|+++||+|+++...-. . ..++..-...+.|++++.||+|+... +++.+..+..........++++||++|+|
T Consensus 83 ~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~g 162 (173)
T cd04154 83 DALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 53899985565788999999999998635415984799987656777889999999986874457982999988966929
Q ss_pred HHHHHHHHHH
Q ss_conf 2678999998
Q gi|254780941|r 175 CDDVLNYLCS 184 (311)
Q Consensus 175 id~L~~~L~~ 184 (311)
|+++.++|.+
T Consensus 163 I~e~f~wL~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHHC
T ss_conf 8999999864
No 60
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=3.7e-21 Score=156.73 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=113.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCC------CCCEEEEE--------------EEEEEECCEEEEEEECCCCHHH
Q ss_conf 899833899868899999868920210588------88602127--------------8999739948999987984010
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHK------VQTTRSIV--------------RGIVSEKESQIVFLDTPGIFNA 83 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k------~~TTr~~i--------------~gi~~~~~~qiifvDTPG~~~~ 83 (311)
+|+++|...+|||||+.+|.+..-+...++ -+.|-+.- ......+++++.|+||||
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPG---- 77 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPG---- 77 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC----
T ss_conf 8999976178999999999833350122135889977971671001378514422112323467745899987798----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH----HHHHH--
Q ss_conf 123575321002345555321001100001000000012234544287202578721101043457888----86410--
Q gi|254780941|r 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQA----EIANK-- 157 (311)
Q Consensus 84 ~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~----~~~~~-- 157 (311)
+..+.+...+++..+|.+++||||++++..+..+.+..+...+.|+|+++||+|+++.++..... +.+..
T Consensus 78 ----H~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~l 153 (192)
T cd01889 78 ----HASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL 153 (192)
T ss_pred ----CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ----3889988888874326527999878888789999999999858997999974127881577999999999999998
Q ss_pred -C--CCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -0--123343110001387426789999983662
Q gi|254780941|r 158 -L--VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 158 -~--~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
. +...+++|+||++|.|+++|.+.|.+.+|.
T Consensus 154 ~~~~~~~~~iipiSA~~G~gi~eL~~~i~~lip~ 187 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6538999849995789884989999888761899
No 61
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.85 E-value=9.6e-21 Score=154.08 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=104.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 21899833899868899999868920210588886021278999739948999987984010123575321002345555
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
--.|+++|.+|||||||+|++.++..+.+.+..+. ....+..++.++.+.||||- +.+.......+.+
T Consensus 14 ~~Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~----~~~~v~~~~~~~~lwD~~G~--------~~~~~~~~~y~~~ 81 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGF----NIKTVQSDGFKLNVWDIGGQ--------RAIRPYWRNYFEN 81 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE----EEEEEEECCEEEEEEECCCC--------HHHHHHHHHHCCC
T ss_conf 75899997999988999999856998660681132----37999989999999855875--------1012689976555
Q ss_pred HHHHCCCCHHHHHHHC-C----HHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3210011000010000-0----00122345442872025787211010---43457888864100123343110001387
Q gi|254780941|r 102 ADIVCLVVDSHRELKV-N----IHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 102 aDiil~VvDa~~~~~~-~----~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
+|+++||+|+++...- . ..+++......+.|++++.||+|+.. .+++.+..+..........++++||++|+
T Consensus 82 a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~~~eI~~~l~l~~~~~~~~~i~~~SA~tG~ 161 (173)
T cd04155 82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCCCEEEEEECCCCC
T ss_conf 63799999667568899999999999741300698389999766677789999999985876434887589995785793
Q ss_pred CHHHHHHHHHHH
Q ss_conf 426789999983
Q gi|254780941|r 174 GCDDVLNYLCST 185 (311)
Q Consensus 174 Gid~L~~~L~~~ 185 (311)
|+++..+||++.
T Consensus 162 Gi~E~f~WL~~n 173 (173)
T cd04155 162 GLQEGMNWVCKN 173 (173)
T ss_pred CHHHHHHHHHCC
T ss_conf 989999998549
No 62
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.85 E-value=1.9e-20 Score=152.20 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=102.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012357532100234555
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|.-.|.++|.+|||||||+|++.+.+.+.+.+..+.+ ...+..++..+.+.||||-. .+.......+.
T Consensus 13 k~~Ki~llG~~~vGKTsll~~~~~~~~~~~~pTig~~----~~~v~~~~~~~~iwDt~Gqe--------~~~~~~~~y~~ 80 (174)
T pfam00025 13 KEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFN----VETVTYKNVKFTVWDVGGQE--------SLRPLWRNYFP 80 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCE----EEEEEECCEEEEEEECCCCC--------CCCHHHHHHHC
T ss_conf 6669999999999889999999549988744746823----89999899999998279870--------23267998841
Q ss_pred HHHHHCCCCHHHHHHHCC-HHH----HHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 532100110000100000-001----223454428720257872110104---345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHD----LLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~----il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
++|++++|+|+++...-. ... ++..-...+.|++++.||+|+.+. +++...............+|++||++|
T Consensus 81 ~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~~~~~~~~~~~~~~~SAktG 160 (174)
T pfam00025 81 NTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKSRPWEIQGCSAVTG 160 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 78268999867867879999999999875423589708998725667678999999999978644179968999988679
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 74267899999836
Q gi|254780941|r 173 HGCDDVLNYLCSTL 186 (311)
Q Consensus 173 ~Gid~L~~~L~~~l 186 (311)
+|++++.++|.++.
T Consensus 161 ~gI~e~f~~L~~~I 174 (174)
T pfam00025 161 EGLDEGLDWLSNYI 174 (174)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 59899999999539
No 63
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=4.6e-20 Score=149.65 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=113.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEC---------C------CCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 8998338998688999998689202105---------8------888602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVT---------H------KVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS---------~------k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
+|+++|...+|||||+.+|+..--.+.. + .-+.|-......+..++..+.|+||||.
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH-------- 75 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH-------- 75 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC--------
T ss_conf 899990689879999999999748763046521686147588887287633458999989988999989984--------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH--HHHHHHHHHHHHCCCC-----
Q ss_conf 532100234555532100110000100000001223454428720257872110104--3457888864100123-----
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP--ERLLEQAEIANKLVFI----- 161 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~--~~l~~~~~~~~~~~~~----- 161 (311)
..+.....+++.-+|.+++||||.++...+..+.+..+...+.|.++++||+|+... +++...+..+...+++
T Consensus 76 ~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~ 155 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77777898776434467898653789758999999999872997499885645898889999999999998639993335
Q ss_pred -CCCCCCCCCCC----------CCHHHHHHHHHHHCCC
Q ss_conf -34311000138----------7426789999983662
Q gi|254780941|r 162 -EKTFMVSATKG----------HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 162 -~~i~~ISAk~g----------~Gid~L~~~L~~~lpe 188 (311)
.+++++||++| .+++.|++.+.+++|+
T Consensus 156 ~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~ 193 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 88578725655335778865646599999999965889
No 64
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=1.5e-20 Score=152.88 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=116.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE------CCEEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 8512189983389986889999986892021058888602127899973------9948999987984010123575321
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------KESQIVFLDTPGIFNAKDSYHKLMI 92 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~------~~~qiifvDTPG~~~~~~~l~~~~~ 92 (311)
-.|+..|+|+|.-..||+||+.+|-+.+|+.- ---|-|.+ .|.+.. .+.+++|+||||. . .|.
T Consensus 269 ~~RpPVVTIMGHVDHGKTsLLD~iR~t~Va~~-EaGGITQh--IGAy~V~~~~~~~~~~ITFlDTPGH-e-------AFt 337 (770)
T CHL00189 269 IRRPPIVTILGHVDHGKTTLLDAIRKTNIAQK-EAGGITQK--IGAYEVEVPYKDQNQKIVFLDTPGH-E-------AFS 337 (770)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCCE--ECEEEEEECCCCCCCEEEEECCCCH-H-------HHH
T ss_conf 77899899857725772037888852885134-56765550--3529997515788975899559946-8-------899
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHH----HHHHCCCCCCCCC
Q ss_conf 0023455553210011000010000000122345442872025787211010--434578888----6410012334311
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAE----IANKLVFIEKTFM 166 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~----~~~~~~~~~~i~~ 166 (311)
..-.+...-+|++++||.|+++..++..+.++..+..+.|+|+++||||+.. .+++..... ...+|.+...++|
T Consensus 338 ~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~gli~EewGGd~~~V~ 417 (770)
T CHL00189 338 SMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKYNLISEKWGGQTPMIP 417 (770)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEE
T ss_conf 99862786666799999657885672799999998769988999877458998857899999986955222379559999
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 00013874267899999836
Q gi|254780941|r 167 VSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 167 ISAk~g~Gid~L~~~L~~~l 186 (311)
|||++|.|+++|++.|.-.+
T Consensus 418 ISAktg~gId~LLE~IlL~A 437 (770)
T CHL00189 418 ISALQGTNIDKLLEMILLLA 437 (770)
T ss_pred EEECCCCCHHHHHHHHHHHH
T ss_conf 66167988799999999998
No 65
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=5.4e-20 Score=149.20 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE---------EECC------C------CCCEEEE-------EEEEE-------EEC
Q ss_conf 8998338998688999998689202---------1058------8------8860212-------78999-------739
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVS---------IVTH------K------VQTTRSI-------VRGIV-------SEK 68 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vs---------ivS~------k------~~TTr~~-------i~gi~-------~~~ 68 (311)
+|+++|.-.+|||||+-+|+|.... ++.. + .+.++.. ..... ..-
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 69999885787999999970851244078886776031114566665111212231011110124421453145654311
Q ss_pred CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HCCHHHHHHHHHHCCCC-CEEEEEECCCHHHH
Q ss_conf 94899998798401012357532100234555532100110000100-00000122345442872-02578721101043
Q gi|254780941|r 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILNKIDCVKPE 146 (311)
Q Consensus 69 ~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~-~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~ 146 (311)
..++.|+|||| ++.+.+........||++++||||+++. ..+..+.+..+...+.+ +|+++||+|+++.+
T Consensus 82 ~r~~tiiD~PG--------H~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~~ 153 (203)
T cd01888 82 VRHVSFVDCPG--------HEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred EEEEEEEECCC--------HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 24799986898--------7999999997664347668986436677507799999999984998636775077778867
Q ss_pred HHHHHHHHHHHCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4578888641001-----23343110001387426789999983662
Q gi|254780941|r 147 RLLEQAEIANKLV-----FIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 147 ~l~~~~~~~~~~~-----~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
...+..+.+.... ....++||||++|.|+++|++.|.+++|+
T Consensus 154 ~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~ 200 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 89999999999855216899859991478897999999999867829
No 66
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.82 E-value=1.2e-19 Score=146.97 Aligned_cols=159 Identities=24% Similarity=0.309 Sum_probs=117.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEE--E-CCEEEEEEECCCCHHHCCCCCCCCCC
Q ss_conf 36851218998338998688999998689202105888860212789997--3-99489999879840101235753210
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS--E-KESQIVFLDTPGIFNAKDSYHKLMIR 93 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~--~-~~~qiifvDTPG~~~~~~~l~~~~~~ 93 (311)
+--+|...|+|+|.-..||+|||.+|-+.+|+.- ---+-|.+. |.|. . .+..++|+||||. +.|..
T Consensus 336 ~~~~r~pvvt~mghvdhgkt~lld~~r~~~v~~~-e~ggitq~i--ga~~v~~~~~~~itf~dtpgh--------~af~~ 404 (839)
T PRK05306 336 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTKVAAG-EAGGITQHI--GAYQVETENGKKITFLDTPGH--------EAFTA 404 (839)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCCEE--EEEEEEECCCCEEEEECCCCH--------HHHHH
T ss_conf 0566898898857746773148999862875355-678755222--349999569987998558855--------88999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHH----HHHCCCCCCCCCC
Q ss_conf 023455553210011000010000000122345442872025787211010--4345788886----4100123343110
Q gi|254780941|r 94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEI----ANKLVFIEKTFMV 167 (311)
Q Consensus 94 ~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~----~~~~~~~~~i~~I 167 (311)
.-.+...-.|++++||-|+++..++..+.++..+..+.|+|+++||||+-. ++.+...+.. ...|.+....++|
T Consensus 405 mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg~~~~v~~ 484 (839)
T PRK05306 405 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGGDTIFVPV 484 (839)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf 98635765436999997777756778999999997499889997404678898899999999849864542894489981
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
||++|.|||+|++.|.-.+
T Consensus 485 sa~~~~~~~~l~e~i~l~a 503 (839)
T PRK05306 485 SAKTGEGIDELLEAILLQA 503 (839)
T ss_pred EECCCCCHHHHHHHHHHHH
T ss_conf 5157887899999999876
No 67
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.81 E-value=5.5e-20 Score=149.20 Aligned_cols=165 Identities=22% Similarity=0.324 Sum_probs=124.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCC---CCCE------E--------EEEEEEEE-E---CCEEEEEEECCCCHHH
Q ss_conf 99833899868899999868920210588---8860------2--------12789997-3---9948999987984010
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHK---VQTT------R--------SIVRGIVS-E---KESQIVFLDTPGIFNA 83 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k---~~TT------r--------~~i~gi~~-~---~~~qiifvDTPG~~~~ 83 (311)
-+||=.=-.|||||--+|+... .++|.+ .|.. | ++++=-++ . +.|.|.||||||..+-
T Consensus 6 FsIIAHIDHGKSTLADRlle~T-~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 6 FSIIAHIDHGKSTLADRLLEKT-GAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred EEEEEEECCCCCHHHHHHHHHC-CCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 6788462489324889999861-745620254305775100000582011563475337533887889964528897212
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHHHHHHCCCC
Q ss_conf 12357532100234555532100110000100000001223454428720257872110--1043457888864100123
Q gi|254780941|r 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC--VKPERLLEQAEIANKLVFI 161 (311)
Q Consensus 84 ~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDl--v~~~~l~~~~~~~~~~~~~ 161 (311)
.+ .+.++++-|..+|+||||++++..+...-+....+++..+|-|+||+|| ++++++..+++..-..- .
T Consensus 85 sY--------EVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld-~ 155 (598)
T TIGR01393 85 SY--------EVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-A 155 (598)
T ss_pred CH--------HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-C
T ss_conf 73--------78888887164035614103235888999988756187584778253688888589999876541889-6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 3431100013874267899999836622356896433430256
Q gi|254780941|r 162 EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 (311)
Q Consensus 162 ~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~ 204 (311)
.+++-+|||+|.||++|++.|+++.|+ |.+...|.|.+
T Consensus 156 ~~ai~~SAKtG~Gi~e~LEaIv~~vPp-----P~Gd~~DapLk 193 (598)
T TIGR01393 156 SEAILASAKTGIGIEEILEAIVKRVPP-----PKGDPDDAPLK 193 (598)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC-----CCCCCCCCCCE
T ss_conf 430387503678889998897101810-----01138886632
No 68
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=3.2e-19 Score=144.25 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=97.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
|.++|.+|||||||++++.+....-+.| |...-...+...+.++.+.||||- +.+.......+.++|+
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~~~~~p----Tig~~~~~i~~~~~~l~iwDt~G~--------~~~~~~~~~y~~~a~~ 69 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTIP----TIGFNVETVEYKNVSFTVWDVGGQ--------DKIRPLWKHYYENTNG 69 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCC----EECCCEEEEEECCEEEEEEECCCC--------CCCCHHHHHHHCCCCE
T ss_conf 9999999998899999995399887445----607408999848899999988997--------2214489987276877
Q ss_pred HCCCCHHHHHHHC-CHHHHHHHH----HHCCCCCEEEEEECCCHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 0011000010000-000122345----44287202578721101043---457888864100123343110001387426
Q gi|254780941|r 105 VCLVVDSHRELKV-NIHDLLKEI----AKRSSRLILILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 105 il~VvDa~~~~~~-~~~~il~~l----~~~~~p~IiVlNKiDlv~~~---~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
++||+|+++...- .....+..+ ...+.|++++.||+|+.... ++.+.............+|++||++|+|++
T Consensus 70 ~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~gI~ 149 (158)
T cd00878 70 IIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 68998379888999999999999866055765389876054766578999999998587510799899999888792989
Q ss_pred HHHHHHHHH
Q ss_conf 789999983
Q gi|254780941|r 177 DVLNYLCST 185 (311)
Q Consensus 177 ~L~~~L~~~ 185 (311)
+..++|.+.
T Consensus 150 e~f~~L~eq 158 (158)
T cd00878 150 EGLDWLLQQ 158 (158)
T ss_pred HHHHHHHCC
T ss_conf 999999569
No 69
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=3.1e-19 Score=144.35 Aligned_cols=157 Identities=27% Similarity=0.360 Sum_probs=104.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCC-CEEEE------EE------EEEE------ECCEEEEEEECCC
Q ss_conf 8512189983389986889999986892021058888-60212------78------9997------3994899998798
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TTRSI------VR------GIVS------EKESQIVFLDTPG 79 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~-TTr~~------i~------gi~~------~~~~qiifvDTPG 79 (311)
.-|+..|+|+|.-..||+||+.+|-+.+|+. .-++ -|.+. .. +-+. ..--.+.|+||||
T Consensus 2 ~lR~PIvtimGHVDhGKTsLLD~iR~t~V~~--~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPG 79 (592)
T PRK04004 2 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPG 79 (592)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 9889889997873777636899986287735--55776232306598412310110344334433234567755765996
Q ss_pred CHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH---------------
Q ss_conf 40101235753210023455553210011000010000000122345442872025787211010---------------
Q gi|254780941|r 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--------------- 144 (311)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--------------- 144 (311)
.. .|...-.+...-+|++++|||+++++.++..+.++.++..+.|+|+++||+|++.
T Consensus 80 He--------aFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~ 151 (592)
T PRK04004 80 HE--------AFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFK 151 (592)
T ss_pred HH--------HHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 59--------9999997367457889999977888676279999999975998899986223566677676741123223
Q ss_pred --HHHH--------HHHHHHHHH-------------CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --4345--------788886410-------------0123343110001387426789999983
Q gi|254780941|r 145 --PERL--------LEQAEIANK-------------LVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 145 --~~~l--------~~~~~~~~~-------------~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
++.. .+....+.+ +.+.-.++|+||++|+|+++|++.|...
T Consensus 152 ~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~L 215 (592)
T PRK04004 152 KQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 215 (592)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 1738899999888888889998728763221454345881489978205689989999999999
No 70
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=5.6e-19 Score=142.63 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=97.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEE---ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9983389986889999986892021---0588886021278999739948999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSI---VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsi---vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
|.++|.+|||||||+|++....... ..+...+|-....+.+..++..+.+.||||-- .+.........+
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe--------~~~~l~~~y~~~ 73 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--------SLRSLWDKYYAE 73 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCH--------HHHHHHHHHCCC
T ss_conf 999999998888999988750367677765540353132689999899999999689878--------887899874289
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHH----HHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCC--CCCCCCCCCCC
Q ss_conf 32100110000100000-00122345----4428720257872110104---345788886410012--33431100013
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEI----AKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVF--IEKTFMVSATK 171 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l----~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~--~~~i~~ISAk~ 171 (311)
+|+++||+|+++...-. ....+..+ ...+.|++++.||+|+... +++.+..+....... ...++++||++
T Consensus 74 a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAkt 153 (167)
T cd04160 74 CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 87899998668678899999999997511024896299997066766577899999999999998546998999988782
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 87426789999983
Q gi|254780941|r 172 GHGCDDVLNYLCST 185 (311)
Q Consensus 172 g~Gid~L~~~L~~~ 185 (311)
|+|+++..++|.+.
T Consensus 154 G~Gv~e~f~wL~~k 167 (167)
T cd04160 154 GTGVREGIEWLVER 167 (167)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 94989999999659
No 71
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.79 E-value=1e-18 Score=140.92 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=97.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEE-ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9983389986889999986892021-058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSI-VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsi-vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
|+++|.+|||||||+|++++.+... +.|..+.+ . ..+..++..+.+.||||--+ +.......+.++|
T Consensus 2 I~llG~~~~GKTsll~~~~~~~f~~~~~pTig~~---~-~~i~~~~~~l~iwDt~G~e~--------~~~l~~~y~~~~~ 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFN---M-RKVTKGNVTLKVWDLGGQPR--------FRSMWERYCRGVN 69 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEE---E-EEEEECCEEEEEEECCCHHH--------HHHHHHHHHCCCC
T ss_conf 8999999986999999997599988616732505---8-99998999999997983587--------7999998746863
Q ss_pred HHCCCCHHHHHHHCC-HHHHH----HHHHHCCCCCEEEEEECCCHHHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 100110000100000-00122----34544287202578721101043---45788886410012334311000138742
Q gi|254780941|r 104 IVCLVVDSHRELKVN-IHDLL----KEIAKRSSRLILILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 104 iil~VvDa~~~~~~~-~~~il----~~l~~~~~p~IiVlNKiDlv~~~---~l~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++++|+|+++...-. ....+ ..-...+.|++++.||+|+.... ++.+.............+|++||++|.|+
T Consensus 70 ~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gI 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 68751577878899999999999985443489828988835676434789999999999987349987999979689698
Q ss_pred HHHHHHHHHH
Q ss_conf 6789999983
Q gi|254780941|r 176 DDVLNYLCST 185 (311)
Q Consensus 176 d~L~~~L~~~ 185 (311)
+++.++|.++
T Consensus 150 ~e~f~wL~~~ 159 (159)
T cd04159 150 DIVLDWLIKH 159 (159)
T ss_pred HHHHHHHHCC
T ss_conf 9999999659
No 72
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=3.5e-18 Score=137.51 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=102.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012357532100234555
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|...|.++|.+|||||||++++...+..-+.|..+.. ...+..++..+.+.||+|- +.+.........
T Consensus 14 k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~----~~~i~~~~~~~~iwD~~G~--------e~~~~~~~~y~~ 81 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--------ESLRSSWNTYYT 81 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCC--------CCCCCHHHHHHC
T ss_conf 7799999989999889999999739927716723604----6999978889999989998--------656622677705
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHH-HH---HCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-00012234-54---428720257872110104---345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKE-IA---KRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~-l~---~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
++|+++||+|+++...- .....+.. +. -.+.|++++.||.|+... +++.+.............++++||++|
T Consensus 82 ~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 77537999976788899999999999972610169828999955556557899999999747776359809999668589
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7426789999983
Q gi|254780941|r 173 HGCDDVLNYLCST 185 (311)
Q Consensus 173 ~Gid~L~~~L~~~ 185 (311)
+|+++..++|.+.
T Consensus 162 ~Gv~e~f~wLa~k 174 (174)
T cd04153 162 EGLPEGLDWIASR 174 (174)
T ss_pred CCHHHHHHHHHCC
T ss_conf 1989999998669
No 73
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.77 E-value=3.2e-18 Score=137.76 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=116.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCC--EEEECCCC------------CCEEEEEEE--EEEE---CCEEEEEEEC
Q ss_conf 368512189983389986889999986892--02105888------------860212789--9973---9948999987
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAK--VSIVTHKV------------QTTRSIVRG--IVSE---KESQIVFLDT 77 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~--vsivS~k~------------~TTr~~i~g--i~~~---~~~qiifvDT 77 (311)
.++.| +++|+..-..|||||..+|+... ++....+. |-|-..... .+.. .++++.|+||
T Consensus 4 ~~~IR--Nf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDT 81 (601)
T PRK05433 4 MKNIR--NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDT 81 (601)
T ss_pred HHCCC--EEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 32045--5899994378888899999997099774432333145415576558369786799998848996799998548
Q ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH--HHHHHHHHHHHH
Q ss_conf 984010123575321002345555321001100001000000012234544287202578721101--043457888864
Q gi|254780941|r 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV--KPERLLEQAEIA 155 (311)
Q Consensus 78 PG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv--~~~~l~~~~~~~ 155 (311)
||..+ +.-.+.+++.-||.+++||||+++...+....+....+.+.++|.|+||+|+. +.+.+..+++..
T Consensus 82 PGHVD--------F~~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~ 153 (601)
T PRK05433 82 PGHVD--------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDI 153 (601)
T ss_pred CCCCC--------CCEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 98566--------4504556033407259999768785600699999999879965777861468889989999999988
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 100123343110001387426789999983662
Q gi|254780941|r 156 NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 156 ~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
-.. ..++++++||++|.|+++|++.+++++|+
T Consensus 154 igl-~~~eil~vSAKtG~GV~~lLdaIV~~iP~ 185 (601)
T PRK05433 154 IGI-DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (601)
T ss_pred HCC-CHHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 689-64777777523388879999999974799
No 74
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.77 E-value=8.1e-18 Score=135.14 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=100.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.|+||||||+|++++.... ....|.++.+...-.++.++ ..+.+.||||.-. +.......+..+
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~--------~~~~~~~~~~~a 72 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFP-EEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER--------FRALRPLYYRGA 72 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHCCC
T ss_conf 899997997799999999619999-87477413556789999999999999997898720--------467889986257
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2100110000100000-001223454---428720257872110104345-78888641001233431100013874267
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
|++++|+|+++..+-. ...++..+. ..+.|+++|.||+|+..+..+ .+.++.+.+..+. ..+++||++|.|+++
T Consensus 73 d~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e~~~~a~~~~~-~y~e~Sak~g~gI~~ 151 (162)
T pfam00071 73 QGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEEGEALAKELGL-PFMETSAKTNENVEE 151 (162)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCCCHHH
T ss_conf 6550423489889999999999999985798862889975247465188999999999998099-799973788829999
Q ss_pred HHHHHHHHC
Q ss_conf 899999836
Q gi|254780941|r 178 VLNYLCSTL 186 (311)
Q Consensus 178 L~~~L~~~l 186 (311)
+.+.|++.+
T Consensus 152 ~F~~i~~~i 160 (162)
T pfam00071 152 AFEELAREI 160 (162)
T ss_pred HHHHHHHHH
T ss_conf 999999996
No 75
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.77 E-value=2.5e-18 Score=138.42 Aligned_cols=155 Identities=23% Similarity=0.318 Sum_probs=123.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC------CCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf 8998338998688999998689202105888------860212789997399--48999987984010123575321002
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV------QTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLS 95 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~------~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~ 95 (311)
.||..|.---||+||+.+|||-.-+-+.++| |-|=|-=.+-++.++ +-+-|||.|| |+.+.+.+
T Consensus 2 ~~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPG--------He~fl~n~ 73 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPG--------HEKFLSNA 73 (627)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCC--------HHHHHHHH
T ss_conf 6873124450479999985064301231277410257662460420036777771334785597--------38999998
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHH---HHHHHHHHH---CCCCCCCCCCC
Q ss_conf 3455553210011000010000000122345442872-0257872110104345---788886410---01233431100
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERL---LEQAEIANK---LVFIEKTFMVS 168 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l---~~~~~~~~~---~~~~~~i~~IS 168 (311)
..++..+|.+++||||++++..+..+.+.-+...+.| .|+|+||+|.++++.+ ...+..... +....++|.||
T Consensus 74 lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~~~~~~S 153 (627)
T TIGR00475 74 LAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNAKIFKTS 153 (627)
T ss_pred HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 66756540100354157788532389999999708961999973467456589999999999998764321157479991
Q ss_pred CCCCCCHHHHHHHHHHHC
Q ss_conf 013874267899999836
Q gi|254780941|r 169 ATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 169 Ak~g~Gid~L~~~L~~~l 186 (311)
|.+|+||++|++.|.+++
T Consensus 154 A~tG~Gi~~Lk~~L~~L~ 171 (627)
T TIGR00475 154 AKTGQGIEELKKELKNLL 171 (627)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 346877789999998657
No 76
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.8e-18 Score=138.12 Aligned_cols=158 Identities=22% Similarity=0.152 Sum_probs=108.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCE---EE-------ECC-----CCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCC
Q ss_conf 1899833899868899999868920---21-------058-----88860212789997399489999879840101235
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKV---SI-------VTH-----KVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~v---si-------vS~-----k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l 87 (311)
-.|+++|...+|||||+.+|++.-- .. ... ..+-|-+.-..-+..++..+.|+||||.
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH------- 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH------- 75 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCH-------
T ss_conf 7999996058869899999999886634444112001005466650588614418999608816996268960-------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCE-EEEEECCCHHHHHHHHHHH----HHHHCCCC-
Q ss_conf 75321002345555321001100001000000012234544287202-5787211010434578888----64100123-
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNKIDCVKPERLLEQAE----IANKLVFI- 161 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~I-iVlNKiDlv~~~~l~~~~~----~~~~~~~~- 161 (311)
..+.....+.+..+|.+++||||.++..++..+.+..+...+.|.+ +++||+|+++.+...+.++ .+-...++
T Consensus 76 -~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~ 154 (195)
T cd01884 76 -ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred -HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf -7788899863511362689985277874789999999998099962799968778987899999999999999842999
Q ss_pred ---CCCCCCCCCCCC----------CHHHHHHHHHHHCCC
Q ss_conf ---343110001387----------426789999983662
Q gi|254780941|r 162 ---EKTFMVSATKGH----------GCDDVLNYLCSTLPL 188 (311)
Q Consensus 162 ---~~i~~ISAk~g~----------Gid~L~~~L~~~lpe 188 (311)
..++|+||++|. |+..|++.|.++.|+
T Consensus 155 ~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~ 194 (195)
T cd01884 155 GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred CCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 5568299977387535788875536999999999964899
No 77
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=7.3e-18 Score=135.44 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=101.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012357532100234555
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|...|.++|.+|||||||++++.......+.|..+.. ...+...+..+.+.||+|- +.+.........
T Consensus 16 k~~kililGl~~sGKTsil~~l~~~~~~~~~pTvg~~----~~~~~~~~~~l~iwD~~Gq--------e~~r~lw~~yy~ 83 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFN----VETVEYKNLKFTMWDVGGQ--------DKLRPLWRHYYQ 83 (182)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCC--------CCCCHHHHHCCC
T ss_conf 7479999967998899999999629977737868845----6999978889999989998--------454747876056
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHH----HHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-0001223----454428720257872110104---345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLK----EIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~----~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+||.++||+|+++...- ...+.+. .-.-.+.|++++.||.|+.+. .++.+.............++++||++|
T Consensus 84 ~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG 163 (182)
T PTZ00133 84 NTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCC
T ss_conf 76449999966787899999999999971442248859999706687788899999999695556159958998257589
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
+|+++..++|.+.+..
T Consensus 164 ~Gi~e~f~wL~~~ikk 179 (182)
T PTZ00133 164 QGLYEGLDWLSANIKK 179 (182)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 4989999999999998
No 78
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.76 E-value=1.3e-17 Score=133.77 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=99.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101235753210023455553
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
-.|.++|.+|||||||++++......-+.|..+. ....+..++..+.+.||+|- +.+.........+|
T Consensus 14 ~kililG~~~~GKTsil~~l~~~~~~~~~pTvg~----~~~~~~~~~~~l~iwD~~Gq--------e~~r~l~~~Yy~~a 81 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESVTTIPTIGF----NVETVTYKNISFTVWDVGGQ--------DKIRPLWRHYYTNT 81 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC----EEEEEEECCEEEEEEECCCC--------CCCCHHHHHHCCCC
T ss_conf 9999998899998999999965997775797881----07999989899999989998--------54553677755776
Q ss_pred HHHCCCCHHHHHHHC-CHHH----HHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 210011000010000-0001----223454428720257872110104---34578888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELKV-NIHD----LLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~-~~~~----il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
|.++||+|+++...- .... ++..-.-.+.|++++.||+|+... .++.+......-......++++||++|+|
T Consensus 82 ~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~G 161 (175)
T smart00177 82 QGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDG 161 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCC
T ss_conf 18999986687789999999999996315316986999984566767889999999968665407975999826878969
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
|++..++|.+.++
T Consensus 162 I~e~f~wL~~~ik 174 (175)
T smart00177 162 LYEGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999999844
No 79
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=1.3e-17 Score=133.73 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=94.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9983389986889999986892021--05888860212789997399489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSI--VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsi--vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|.++|.+|||||||++++....... +.|..+. . ...+..++..+.+.|++|-.+ +.......+.++
T Consensus 2 Il~lGl~~sGKTtil~~l~~~~~~~~~~~pT~G~---~-~~~~~~~~~~~~iwD~~G~~~--------~r~lw~~y~~~~ 69 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGF---N-VESFEKGNLSFTAFDMSGQGK--------YRGLWEHYYKNI 69 (162)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE---E-EEEEEECCEEEEEEECCCCCC--------CCHHHHHHHCCC
T ss_conf 9999999998899999997289875641685075---7-899983998899998588744--------205589870567
Q ss_pred HHHCCCCHHHHHHHCC-----HHHHHHH--HHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2100110000100000-----0012234--5442872025787211010---4345788886410012334311000138
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-----IHDLLKE--IAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-----~~~il~~--l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
|.++||+|+++...-. ...+++. +...+.|++++.||.|+.. .+++.+......-......+|++||++|
T Consensus 70 ~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG 149 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTG 149 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCC
T ss_conf 44899970763888999999999997176551798459999814778899999999988586652489649999789789
Q ss_pred CCHHHHHHHHHH
Q ss_conf 742678999998
Q gi|254780941|r 173 HGCDDVLNYLCS 184 (311)
Q Consensus 173 ~Gid~L~~~L~~ 184 (311)
+|+++-.+||.+
T Consensus 150 ~Gi~e~f~WL~~ 161 (162)
T cd04157 150 EGLDEGVQWLQA 161 (162)
T ss_pred CCHHHHHHHHHC
T ss_conf 798999999865
No 80
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.8e-18 Score=135.64 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=112.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEE---EE--CCEEEEEEECCCCHHHCCCCCCCCCC
Q ss_conf 85121899833899868899999868920210588886021278999---73--99489999879840101235753210
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV---SE--KESQIVFLDTPGIFNAKDSYHKLMIR 93 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~---~~--~~~qiifvDTPG~~~~~~~l~~~~~~ 93 (311)
..|+..|+++|.--.||+||+.+|-+.+++..-. -+-|.+. |.+ .. +...+.|+||||. ..-..+..
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea-GGITQhI--GA~~v~~~~~~~~~itFiDTPGH-eAFt~mRa---- 73 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA-GGITQHI--GAYQVPLDVIKIPGITFIDTPGH-EAFTAMRA---- 73 (509)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCC-CCEEEEE--EEEEEEECCCCCCEEEEECCCCH-HHHHHHHH----
T ss_conf 9889889996743588420166674176435667-8500174--34999864688652899748957-88887875----
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH--HHHHHHHH----HHHCCCCCCCCCC
Q ss_conf 02345555321001100001000000012234544287202578721101043--45788886----4100123343110
Q gi|254780941|r 94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE--RLLEQAEI----ANKLVFIEKTFMV 167 (311)
Q Consensus 94 ~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~--~l~~~~~~----~~~~~~~~~i~~I 167 (311)
+..+-+|++++|||++++..++..+-++.++..+.|+++++||+|+.... .+...... ...|.+...++|+
T Consensus 74 ---RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 74 ---RGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ---CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf ---57754457999997567856617999999987799989998543279988789999887779887661881499974
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
||++|+|+++|++.+.-..
T Consensus 151 SA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 151 SAKTGEGIDELLELILLLA 169 (509)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 3247879799999999888
No 81
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.75 E-value=1.8e-17 Score=132.97 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=98.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012357532100234555
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|-..|.++|.+|||||||++++...+..-+.|..+ -....+...+.++.+.||||- +.+.........
T Consensus 8 k~~kililG~~~sGKTsil~~l~~~~~~~~~pTvg----~~~~~~~~~~~~l~iwD~~Gq--------e~~r~l~~~y~~ 75 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG----FNVETVTYKNVKFNVWDVGGQ--------DKIRPLWRHYYT 75 (168)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CEEEEEEECCEEEEEEECCCC--------CCCCCHHHHHCC
T ss_conf 88899999999999899999996699876026267----007999989889999989999--------746606576437
Q ss_pred HHHHHCCCCHHHHHHHC-C----HHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-0----00122345442872025787211010---4345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-N----IHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~----~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
++|.++||+|+++...- . ...++......+.|++++.||.|+.. .+++.+.............++++||++|
T Consensus 76 ~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG 155 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCC
T ss_conf 88668999837767899999999999971452279869999975667778899999999787655179809998068789
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7426789999983
Q gi|254780941|r 173 HGCDDVLNYLCST 185 (311)
Q Consensus 173 ~Gid~L~~~L~~~ 185 (311)
+|+++..+||.++
T Consensus 156 ~Gv~e~f~WL~~~ 168 (168)
T cd04149 156 DGLYEGLTWLSSN 168 (168)
T ss_pred CCHHHHHHHHHCC
T ss_conf 6979999998659
No 82
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=1.8e-17 Score=132.89 Aligned_cols=148 Identities=23% Similarity=0.278 Sum_probs=96.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
|.++|.+|||||||++++......-+ .| |-......+..++..+.+.||+|- +.+.........++|+
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~~~~--~p--Tig~~~~~i~~~~~~~~iwD~~G~--------e~~r~~~~~y~~~~~~ 69 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGQ--------TSIRPYWRCYYSNTDA 69 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC--CC--CCCCCEEEEEECCEEEEEEECCCC--------CCCCHHHHHHCCCCCE
T ss_conf 99999999989999999970996775--78--488246999989889999967986--------2446278874667889
Q ss_pred HCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 0011000010000-----000122345442872025787211010---43457888864100123343110001387426
Q gi|254780941|r 105 VCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 105 il~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
++||+|+++...- ....++..-...+.|++++.||+|+.. .+++.+.............+|++||++|+|++
T Consensus 70 ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~tG~gV~ 149 (158)
T cd04151 70 IIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 99997457878999999999999834653698199999766776577999999998598741699689996787893999
Q ss_pred HHHHHHHH
Q ss_conf 78999998
Q gi|254780941|r 177 DVLNYLCS 184 (311)
Q Consensus 177 ~L~~~L~~ 184 (311)
++.++|..
T Consensus 150 e~f~wL~~ 157 (158)
T cd04151 150 EGMDWLVN 157 (158)
T ss_pred HHHHHHHC
T ss_conf 99999856
No 83
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.75 E-value=1.6e-17 Score=133.26 Aligned_cols=148 Identities=24% Similarity=0.228 Sum_probs=96.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
|.++|.+|||||||++++......-+.|..+.. +.-+...++.++.+.||+|- +.+.......+.+||+
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~~~~~pTig~~---~~~~~~~~~~~l~iwD~~G~--------e~~~~~~~~y~~~a~~ 70 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQ--------EKMRTVWKCYLENTDG 70 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE---EEEEEECCEEEEEEEECCCC--------CCCCHHHHHHHCCCCE
T ss_conf 999999999999999999569877757761503---89999899899999978986--------2474158877456778
Q ss_pred HCCCCHHHHHHHC-CHHHHH----HHHHHCCCCCEEEEEECCCHHH---HHHHHH--HHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0011000010000-000122----3454428720257872110104---345788--88641001233431100013874
Q gi|254780941|r 105 VCLVVDSHRELKV-NIHDLL----KEIAKRSSRLILILNKIDCVKP---ERLLEQ--AEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 105 il~VvDa~~~~~~-~~~~il----~~l~~~~~p~IiVlNKiDlv~~---~~l~~~--~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
+++|+|+++...- .....+ +.-...+.|++++.||.|+... +++... ++.+..... ..++++||++|+|
T Consensus 71 iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~-~~i~~~SAktGeg 149 (160)
T cd04156 71 LVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRD-WYVQPCSAVTGEG 149 (160)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCC
T ss_conf 999985686788787999999998663537874999998633656679999999986999985399-9999866884959
Q ss_pred HHHHHHHHHH
Q ss_conf 2678999998
Q gi|254780941|r 175 CDDVLNYLCS 184 (311)
Q Consensus 175 id~L~~~L~~ 184 (311)
|+++.++|.+
T Consensus 150 i~e~f~~la~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHC
T ss_conf 9999999857
No 84
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.75 E-value=3e-17 Score=131.51 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=102.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 21899833899868899999868920210588886021278999739948999987984010123575321002345555
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
...|.++|..||||||++++|.+.....+.|..+-+ ...+..++..+.+.|++|-- .+...-...+.+
T Consensus 19 ~~kIlilGld~aGKTTil~~l~~~~~~~~~PT~Gfn----~e~i~~~~~~~~~wDvgG~~--------~~R~lW~~Y~~~ 86 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPT----SEELTIGNIKFKTFDLGGHE--------QARRLWKDYFPE 86 (190)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCCC----EEEEEECCEEEEEEECCCCC--------CCCCCHHHHHHC
T ss_conf 048999906999889999998079953152655874----59999899999999899984--------555438888431
Q ss_pred HHHHCCCCHHHHHHH-----CCHHHHHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHH--HC---------CCCC
Q ss_conf 321001100001000-----00001223454428720257872110104---34578888641--00---------1233
Q gi|254780941|r 102 ADIVCLVVDSHRELK-----VNIHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIAN--KL---------VFIE 162 (311)
Q Consensus 102 aDiil~VvDa~~~~~-----~~~~~il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~--~~---------~~~~ 162 (311)
+|.++||||+++... .....++..-.-.+.|++++.||.|+... +++.+...... .. ...-
T Consensus 87 ~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~~~ei~~~L~L~~~~~~~~~~~~~~~~r~~ 166 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 13799999776778999999999999855500698089998666776798999999883984201554433454577614
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 431100013874267899999836
Q gi|254780941|r 163 KTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 163 ~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
.++++||++|+|+++-+++|.+.|
T Consensus 167 ~i~~csA~tG~Gl~egl~WLs~~l 190 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 999655067968289999998549
No 85
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.74 E-value=9.2e-18 Score=134.79 Aligned_cols=86 Identities=27% Similarity=0.275 Sum_probs=67.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE---------------------CC---EEEEEEECCCC
Q ss_conf 9983389986889999986892021058888602127899973---------------------99---48999987984
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE---------------------KE---SQIVFLDTPGI 80 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~---------------------~~---~qiifvDTPG~ 80 (311)
|+|||.||||||||+|+++...+ -+.+.|.||-++..|+... +. .++-|+|.||+
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~~-~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~vDIAGL 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECHHH
T ss_conf 93448898988999999977998-51279966767741620055688416664330433120147740033267521001
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 01012357532100234555532100110000
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~ 112 (311)
+...++ ++-+-...++.+.++|++++|||++
T Consensus 80 V~GAsk-G~GLGNkFL~~iRe~DaiihVVd~s 110 (318)
T cd01899 80 VPGAHE-GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred HCCCCC-CCCCHHHHHHHHHHCCEEEEEEECC
T ss_conf 056645-7766599999998478899985047
No 86
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.74 E-value=3.4e-17 Score=131.12 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=99.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 121899833899868899999868920210588886021278-9997399489999879840101235753210023455
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
++-.|.++|.+|||||||++++......-+.|..+-.-..+. .+....+..+.+.||+|- +.+........
T Consensus 2 ~~~kIvilG~~~~GKTsil~r~~~~~f~~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGq--------e~~r~l~~~Y~ 73 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--------EKLRPLWKSYT 73 (183)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCC--------CCCCEEHHHHH
T ss_conf 6799999999999889999999649867768703557899999616786679999978987--------34510087674
Q ss_pred HHHHHHCCCCHHHHHHHCC-HHHHHHHH----HHCCCCCEEEEEECCCHHH---HHHHHHHH--HHHHCCCCCCCCCCCC
Q ss_conf 5532100110000100000-00122345----4428720257872110104---34578888--6410012334311000
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN-IHDLLKEI----AKRSSRLILILNKIDCVKP---ERLLEQAE--IANKLVFIEKTFMVSA 169 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~-~~~il~~l----~~~~~p~IiVlNKiDlv~~---~~l~~~~~--~~~~~~~~~~i~~ISA 169 (311)
.+||.++||+|+++...-. ....+..+ ...+.|++++.||+|+... .++..... .+....+ ..++++||
T Consensus 74 r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~-~~i~~tSA 152 (183)
T cd04152 74 RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTP-WHVQPACA 152 (183)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEEC
T ss_conf 67867899996776889999999999997321237962999986677766878899999971999866699-89997279
Q ss_pred CCCCCHHHHHHHHHHHCCCC
Q ss_conf 13874267899999836622
Q gi|254780941|r 170 TKGHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 170 k~g~Gid~L~~~L~~~lpe~ 189 (311)
++|+||++..++|.+.+...
T Consensus 153 ~tG~gI~e~f~~L~~~i~~r 172 (183)
T cd04152 153 IIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 97969899999999999999
No 87
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.74 E-value=3.1e-17 Score=131.38 Aligned_cols=154 Identities=22% Similarity=0.203 Sum_probs=103.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
|.++|.+||||||+++++.+.....+.|..+.... .+..++..+.+.||+|- +.+.........++|.
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~pT~G~~~~----~i~~~~~~l~iwD~gG~--------~~~r~~w~~Yy~~~~~ 69 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE----TVEYKNLKFTIWDVGGK--------HKLRPLWKHYYLNTQA 69 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEECCEEEEEEECCCC--------CCCCHHHHHHCCCCCE
T ss_conf 99999899988999999957996897786881669----99989889999989997--------2446367875557627
Q ss_pred HCCCCHHHHHHHCC-----HHHHHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHH-CCCCCCCCCCCCCCCCCH
Q ss_conf 00110000100000-----001223454428720257872110104---345788886410-012334311000138742
Q gi|254780941|r 105 VCLVVDSHRELKVN-----IHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANK-LVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 105 il~VvDa~~~~~~~-----~~~il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~-~~~~~~i~~ISAk~g~Gi 175 (311)
++||+|+++...-. ..+++..-.-.+.|++++.||.|+... +++.+......- ......++++||++|+|+
T Consensus 70 iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~Gi 149 (169)
T cd04158 70 VVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCCCH
T ss_conf 99999863067799999999999712753798499997355677798999999985705452699629995557279598
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 678999998366223
Q gi|254780941|r 176 DDVLNYLCSTLPLAP 190 (311)
Q Consensus 176 d~L~~~L~~~lpe~~ 190 (311)
++..+||.+.+-..+
T Consensus 150 ~e~~~WL~~~ii~~~ 164 (169)
T cd04158 150 YEGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998657
No 88
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=4.2e-17 Score=130.55 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=86.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECC------C------CCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 8998338998688999998689-----2021058------8------886021278999739948999987984010123
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KVSIVTH------K------VQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~vsivS~------k------~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
+|||+|..++||+||.-+|+-. +..-|.. . -+.|-..-..-+..+++++.|+||||..
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCH-----
T ss_conf 989993899899999999999657122266330683037854998984870310589999899879998898846-----
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
.+...+..++.-+|.+++|+|+..+...+...+++.+...+.|.++++||+|.-
T Consensus 76 ---dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre 129 (237)
T cd04168 76 ---DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred ---HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf ---566689889763481699996588822344999999998599859986244578
No 89
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.73 E-value=3.1e-17 Score=131.40 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=97.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
.|.++|.+|||||||++++.....+.+.|..+.+ ...+...+..+.+.||+|-. .+.........+|+
T Consensus 2 KililG~~~sGKTsll~~l~~~~~~~~~pT~g~~----~~~~~~~~~~l~iwD~~G~~--------~~r~l~~~Y~~~a~ 69 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCC--------CCCHHHHHHCCCCC
T ss_conf 9999999999989999999729967758968701----79999898999999789972--------14656786476873
Q ss_pred HHCCCCHHHHHHHCC-HHH----HHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 100110000100000-001----22345442872025787211010---4345788886410012334311000138742
Q gi|254780941|r 104 IVCLVVDSHRELKVN-IHD----LLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 104 iil~VvDa~~~~~~~-~~~----il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
.++||+|+++...-. ... ++..-.-.+.|++++.||.|+.. .+++.+.............++++||++|+|+
T Consensus 70 ~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~Gv 149 (159)
T cd04150 70 GLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCCH
T ss_conf 89999977777899999999999962353369829999975667789899999999686666379859998268679398
Q ss_pred HHHHHHHHHH
Q ss_conf 6789999983
Q gi|254780941|r 176 DDVLNYLCST 185 (311)
Q Consensus 176 d~L~~~L~~~ 185 (311)
++..+||.++
T Consensus 150 ~e~f~WL~~~ 159 (159)
T cd04150 150 YEGLDWLSNN 159 (159)
T ss_pred HHHHHHHHCC
T ss_conf 9999998559
No 90
>PRK09601 translation-associated GTPase; Reviewed
Probab=99.73 E-value=5.8e-17 Score=129.64 Aligned_cols=88 Identities=25% Similarity=0.262 Sum_probs=72.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE-----------------EEEEEECCCCHHHCC
Q ss_conf 189983389986889999986892021058888602127899973994-----------------899998798401012
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-----------------QIVFLDTPGIFNAKD 85 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~-----------------qiifvDTPG~~~~~~ 85 (311)
-.++|||.||||||||+|+|++..+ .+.+.|.||-++..|+...++. ++-|+|.||+....+
T Consensus 3 mkiGivGlPnvGKSTlFnalT~~~~-~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~gAs 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKGAS 81 (364)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 2488877999988999999967998-645899888788006885785458999876287650112589996577678753
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 357532100234555532100110000
Q gi|254780941|r 86 SYHKLMIRLSWSTIKHADIVCLVVDSH 112 (311)
Q Consensus 86 ~l~~~~~~~~~~~l~~aDiil~VvDa~ 112 (311)
. ++-+-...++.+..+|++++||++.
T Consensus 82 ~-G~GLGN~FL~~iR~~DaiihVVr~F 107 (364)
T PRK09601 82 K-GEGLGNKFLANIREVDAIVHVVRCF 107 (364)
T ss_pred C-CCCCHHHHHHHHHHCCEEEEEEECC
T ss_conf 4-6774289999887347567750002
No 91
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=4e-17 Score=130.69 Aligned_cols=193 Identities=22% Similarity=0.282 Sum_probs=131.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 51218998338998688999998689202105888860212789997399489999879840101235753210023455
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
+..-.|-|+|+++||||||+|||++..++.|+..+-+|+....-..+.+..-+++.||||+-++++. .....+.+.+.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~-D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK-DAEHRQLYRDYL 115 (296)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHH-HHHHHHHHHHHH
T ss_conf 6861589743777768899999970267342104668870156774126652488437885532022-189999999886
Q ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHH----------------HHHHHHHHHHHCC-C
Q ss_conf 55321001100001000000012234544--287202578721101043----------------4578888641001-2
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPE----------------RLLEQAEIANKLV-F 160 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~----------------~l~~~~~~~~~~~-~ 160 (311)
...|++++++|+.+..-..+..++..+.- .++|+++++|.+|+..+- -+..+++...++. .
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred HHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 32247999614777001477999999998605760699973665436554300025999878999999999999998763
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 334311000138742678999998366223568964334302567899875999999
Q gi|254780941|r 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFL 217 (311)
Q Consensus 161 ~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~ 217 (311)
...++.+|+..+.|++.|...+++.+|-.. - -....+..+-+..+..|++.-.
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~lp~e~-r---s~~a~~~~d~~~~~~~~~q~~~ 248 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITALPVEA-R---SPLAARLQDELRTQSARTQART 248 (296)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 177477525467668999999998673100-2---4024330168777778878888
No 92
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.73 E-value=2.6e-17 Score=131.87 Aligned_cols=159 Identities=24% Similarity=0.312 Sum_probs=112.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEE--CCCCCCEEE-----------------------EEE---EEEEECCEEEE
Q ss_conf 21899833899868899999868920210--588886021-----------------------278---99973994899
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRS-----------------------IVR---GIVSEKESQIV 73 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsiv--S~k~~TTr~-----------------------~i~---gi~~~~~~qii 73 (311)
.-+|+.+|.-..|||||+.+|+|-...-- ..+-+-|-+ ... +..+.....+.
T Consensus 8 ~vNIgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~is 87 (410)
T PRK04000 8 EVNIGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLRRVS 87 (410)
T ss_pred CCEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 52699996517869999988739754238878864881210510100120545554441353023344455544331699
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHH
Q ss_conf 998798401012357532100234555532100110000100-00000122345442872-0257872110104345788
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQ 151 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~-~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~ 151 (311)
|+|+|| |+.+.+........+|.+++||+|++++ .++..+.+..+...+.+ +++++||+|+++++...+.
T Consensus 88 ~VD~PG--------He~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~e~~~~~ 159 (410)
T PRK04000 88 FVDAPG--------HETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKEKALEN 159 (410)
T ss_pred EEECCC--------HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 997988--------799999998402126679999865778767714999999998099837999962567898999999
Q ss_pred HHHHHHCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 88641001-----23343110001387426789999983662
Q gi|254780941|r 152 AEIANKLV-----FIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 152 ~~~~~~~~-----~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
.+.+.+++ ....++|+||.+|.|++.|++.|.+++|.
T Consensus 160 ~~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~ 201 (410)
T PRK04000 160 YEQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIPT 201 (410)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 999999870676568999996477788940899989862778
No 93
>KOG0462 consensus
Probab=99.72 E-value=6e-17 Score=129.50 Aligned_cols=173 Identities=23% Similarity=0.267 Sum_probs=125.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCC--------------CCCEEEEEEEEEEECC---EEEEEEECCCC
Q ss_conf 685121899833899868899999868920210588--------------8860212789997399---48999987984
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHK--------------VQTTRSIVRGIVSEKE---SQIVFLDTPGI 80 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k--------------~~TTr~~i~gi~~~~~---~qiifvDTPG~ 80 (311)
+|.| +++||-.-..|||||..+|+...=.+--+. -+-|-..-.+.+.+.+ +-+.++||||.
T Consensus 58 ~~iR--NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462 58 ENIR--NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred HHCC--CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCCC
T ss_conf 6313--13799984277016899999982877888755664245445665284787512379997587328875058985
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH--HHHHHHHHHHHHHHC
Q ss_conf 010123575321002345555321001100001000000012234544287202578721101--043457888864100
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV--KPERLLEQAEIANKL 158 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv--~~~~l~~~~~~~~~~ 158 (311)
.+-. -.+.+++.-||.+++||||+++...+....+....+.+..+|.|+||+|+- +.+++..++......
T Consensus 136 vDFs--------~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462 136 VDFS--------GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred CCCC--------CEEHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 5554--------10001265357159999767681288999999999859748886531578988989999999998668
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1233431100013874267899999836622356896433430256789
Q gi|254780941|r 159 VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFT 207 (311)
Q Consensus 159 ~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i 207 (311)
.+ ++++.+||++|.|+++|++.|++..|+ +....|.|-+.++
T Consensus 208 ~~-~~~i~vSAK~G~~v~~lL~AII~rVPp------P~~~~d~plr~Li 249 (650)
T KOG0462 208 PP-AEVIYVSAKTGLNVEELLEAIIRRVPP------PKGIRDAPLRMLI 249 (650)
T ss_pred CC-CCEEEEEECCCCCHHHHHHHHHHHCCC------CCCCCCCCHHHHH
T ss_conf 96-124888702575688899999963799------9888885167776
No 94
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.72 E-value=8.5e-17 Score=128.53 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=116.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021--05888860212789997399-4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSI--VTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsi--vS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+-.|.---|||||+.||+|-.-.- --.+-+-|-+-=.+-+..++ ..+-|||.|| |+++++.......
T Consensus 2 IigTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPG--------HErFIknMlAG~~ 73 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPG--------HEKFLSNMLAGVG 73 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCC--------HHHHHHHHHHHHH
T ss_conf 89963654778999999986888656977897187277130755579997899987998--------3899999974464
Q ss_pred HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000000122345442872-02578721101043457888864100-----1233431100013874
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHG 174 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~~~~~~-----~~~~~i~~ISAk~g~G 174 (311)
..|++++||+|++++.++..+.++.+.-.+.+ .++|+||+|+++++.+....+...+. +.-.++|+|||.+|.|
T Consensus 74 gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l~~~pi~~vSa~tg~G 153 (615)
T PRK10512 74 GIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGFAEAKLFVTAATEGRG 153 (615)
T ss_pred HCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
T ss_conf 37889999988998772379999999981998289999776568979999999999999844787679752014566679
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
+++|++.|.+..+
T Consensus 154 i~~L~~~L~~l~~ 166 (615)
T PRK10512 154 IDALREHLLQLPE 166 (615)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999986255
No 95
>KOG1145 consensus
Probab=99.72 E-value=2.3e-17 Score=132.25 Aligned_cols=159 Identities=23% Similarity=0.259 Sum_probs=116.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 851218998338998688999998689202105888860212789997399-4899998798401012357532100234
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
.+|+..|.|+|....||+||+.+|-++.|++.-. -+-|.+.=-..++.++ ..++|.||||.. .+...-.+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~-GGITQhIGAF~V~~p~G~~iTFLDTPGHa--------AF~aMRaR 220 (683)
T KOG1145 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA-GGITQHIGAFTVTLPSGKSITFLDTPGHA--------AFSAMRAR 220 (683)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHCCEEHHHC-CCCCCEECEEEEECCCCCEEEEECCCCHH--------HHHHHHHC
T ss_conf 8899869986013577001998874072201323-77100002299963899778875687478--------89999862
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHH----HHHHHHCCCCCCCCCCCCCC
Q ss_conf 55553210011000010000000122345442872025787211010--4345788----88641001233431100013
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQ----AEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~----~~~~~~~~~~~~i~~ISAk~ 171 (311)
...-+|++++||-++++..++..+.+...+..+.|+++.+||+|+.. ++.+... --....+.+.-+++||||++
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEECCC
T ss_conf 68644479999972677567689999988765997899984367899898999999987693277707823699865114
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 874267899999836
Q gi|254780941|r 172 GHGCDDVLNYLCSTL 186 (311)
Q Consensus 172 g~Gid~L~~~L~~~l 186 (311)
|.|++.|.+.+.-.+
T Consensus 301 g~nl~~L~eaill~A 315 (683)
T KOG1145 301 GENLDLLEEAILLLA 315 (683)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 798689999999999
No 96
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=8.8e-17 Score=128.44 Aligned_cols=156 Identities=23% Similarity=0.286 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE--------------------EEECCCCC-----------------CEEEEEEEEEE
Q ss_conf 899833899868899999868920--------------------21058888-----------------60212789997
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV--------------------SIVTHKVQ-----------------TTRSIVRGIVS 66 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v--------------------sivS~k~~-----------------TTr~~i~gi~~ 66 (311)
.||++|...+|||||+-+|+...+ ..+|+..+ -|...-.-+..
T Consensus 1 Rv~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
T ss_conf 98999485884889999985677422210677787761899972654411565540101453202134765442201213
Q ss_pred ECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH--HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 3994899998798401012357532100234555--53210011000010000000122345442872025787211010
Q gi|254780941|r 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK--HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 67 ~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~--~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
..+..+.|+|+|| ++.+.+.+...+. .+|.+++||+|+++..+...+.+..+...+.|+++|+||+|+++
T Consensus 81 ~~~k~it~iD~pG--------H~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAG--------HERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred CCCCEEEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 6786799997887--------39999999987635568989999317889779999999999983999899998977689
Q ss_pred HHHHHHHHHHHHH----------------------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4345788886410----------------------------0123343110001387426789999983662
Q gi|254780941|r 145 PERLLEQAEIANK----------------------------LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 145 ~~~l~~~~~~~~~----------------------------~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
++.+.+..+.+.+ ....-++|.+|+.+|.|++.|+.+|. .||.
T Consensus 153 ~~~l~~~~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~fL~-~LP~ 223 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN-LLPL 223 (224)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH-HCCC
T ss_conf 8999999999999970447556870216858899998648867774679976589879999999998-7699
No 97
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=6.9e-17 Score=129.12 Aligned_cols=150 Identities=25% Similarity=0.294 Sum_probs=96.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.+|||||||+|+++...... ...| |. .+-..-.+..++ ..+.+.||||.-+ +.......+.
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~~~f~~-~~~~-Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~--------~~~l~~~~~~ 71 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDE-NYKS-TIGVDFKSKTIEIDGKTVKLQIWDTAGQER--------FRSITPSYYR 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHH
T ss_conf 89999969968999999997099999-8488-666479999999999999999997898265--------7788999975
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-00012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|+|.++..+- .....+..+.+ .+.|+++|.||+|+.++..+ .+..+.+.+..+. ..+.+||++|.|+
T Consensus 72 ~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~~~~i 150 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAKTGENV 150 (159)
T ss_pred HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 412756724489889999999999999986898882699997456301168999999999998699-7999876888198
Q ss_pred HHHHHHHHH
Q ss_conf 678999998
Q gi|254780941|r 176 DDVLNYLCS 184 (311)
Q Consensus 176 d~L~~~L~~ 184 (311)
+++.+.|++
T Consensus 151 ~~~F~~i~~ 159 (159)
T cd00154 151 EELFQSLAE 159 (159)
T ss_pred HHHHHHHHC
T ss_conf 999999869
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.71 E-value=1.9e-16 Score=126.22 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=101.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+|++++..-. .....|..+...-.+..++ ..+.|+||||.-. +.......+.+|
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f~--~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~~~a 71 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE--------FSAMRDLYIRQG 71 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHHHC
T ss_conf 999996996799999999619599--8778830048999999766999999997999623--------557889997643
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|++++|.|+++..+-. ....+..+. ....|+++|.||+|+..+..+ .+.++.+.+..+ ...+.+||++|.|++
T Consensus 72 ~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~-~~y~e~Sak~g~nV~ 150 (160)
T cd00876 72 DGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNINID 150 (160)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCHH
T ss_conf 6899973289878999999999999997287886299999745622307899999999999849-979998479894989
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++.+.|++.+
T Consensus 151 e~F~~i~~~i 160 (160)
T cd00876 151 EVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHC
T ss_conf 9999999729
No 99
>PRK10218 GTP-binding protein; Provisional
Probab=99.71 E-value=2.8e-16 Score=125.21 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=115.5
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCC-----------C-----CCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 3685121899833899868899999868920210588-----------8-----86021278999739948999987984
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHK-----------V-----QTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k-----------~-----~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
-++.| +|||++.--+|||||..+|+.+-=++ +.. + |-|-..-...+..++++|.++||||.
T Consensus 2 ie~IR--NiaIIAHvDhGKTTL~d~lL~~tG~~-~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH 78 (607)
T PRK10218 2 IEKLR--NIAIIAHVDHGKTTLVDKLLQQSGTF-DSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGH 78 (607)
T ss_pred CCCCC--EEEEEECCCCCHHHHHHHHHHHHCCC-CCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCC
T ss_conf 75442--48999756889889999999972898-6445411201478688987597262304899608789978659985
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHHHHC
Q ss_conf 0101235753210023455553210011000010000000122345442872025787211010--43457888864100
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEIANKL 158 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~~~~~ 158 (311)
.+ +.-.+.+++.-+|.+++||||.++..++....+.+..+.+.|.|+|+||+|+.. .+.+...+..+.-.
T Consensus 79 ~D--------F~gEVeR~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~ 150 (607)
T PRK10218 79 AD--------FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVN 150 (607)
T ss_pred CC--------CHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 43--------0148897897668489999788786245899999999879975997216676655357899999988740
Q ss_pred CCCC------CCCCCCCCCCC----------CHHHHHHHHHHHCCC
Q ss_conf 1233------43110001387----------426789999983662
Q gi|254780941|r 159 VFIE------KTFMVSATKGH----------GCDDVLNYLCSTLPL 188 (311)
Q Consensus 159 ~~~~------~i~~ISAk~g~----------Gid~L~~~L~~~lpe 188 (311)
++.. ++++.||++|. ++..|++.|.+++|.
T Consensus 151 L~a~deqld~Pi~~asa~~G~a~~~~~~~~~dl~pLldaIv~~IPa 196 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCCCHHHHCCHHHHHHHHCCEECCCHHHHHHHCCHHHHHHHHHCCC
T ss_conf 4985677444355655406501268234333136088999854879
No 100
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=2.5e-16 Score=125.52 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=89.4
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCC-----CEEEECC-CC--CCEEE-------------EEEEEEEECCEEEE
Q ss_conf 2436851218998338998688999998689-----2021058-88--86021-------------27899973994899
Q gi|254780941|r 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGA-----KVSIVTH-KV--QTTRS-------------IVRGIVSEKESQIV 73 (311)
Q Consensus 15 ~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~-----~vsivS~-k~--~TTr~-------------~i~gi~~~~~~qii 73 (311)
+.++-.|-=+|||+|.|.|||+||.-+|+=. +.--|.. +. +||-+ ....-+..++++|.
T Consensus 3 ~~~ei~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iN 82 (526)
T PRK00741 3 LAQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLIN 82 (526)
T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEE
T ss_conf 67687611779999378989899999999746752448466314678864678858899759648615177867898999
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 9987984010123575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
|+||||..+ +...+.+++.-+|.+++|+||..+...+...+++.+...+.|.++.+||+|..
T Consensus 83 liDTPGh~D--------F~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~ 144 (526)
T PRK00741 83 LLDTPGHED--------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred EEECCCCHH--------HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 990989467--------78999999987375999997775523336899999886399889999656767
No 101
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.71 E-value=6.6e-17 Score=129.26 Aligned_cols=87 Identities=23% Similarity=0.228 Sum_probs=69.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE---------------------C---CEEEEEEECC
Q ss_conf 189983389986889999986892021058888602127899973---------------------9---9489999879
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE---------------------K---ESQIVFLDTP 78 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~---------------------~---~~qiifvDTP 78 (311)
..++|||.||||||||+|+|++.++ .+++.|.||-++..|+... + -.++-|+|.|
T Consensus 3 lk~GIVGLPNvGKSTlFnaLT~~~~-~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vpie~vDIA 81 (396)
T PRK09602 3 IQIGLVGKPNVGKSTFFSAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIPVELIDVA 81 (396)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECC
T ss_conf 3488888999988999999977998-645899888778436252336884366654306542213577336558998755
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 840101235753210023455553210011000
Q gi|254780941|r 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 (311)
Q Consensus 79 G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa 111 (311)
|+++.... ++-+-...++.+.++|++++|||+
T Consensus 82 GLVkGAS~-GeGLGNkFLs~IRevDaI~hVVr~ 113 (396)
T PRK09602 82 GLVPGAHE-GRGLGNQFLDDLRQADALIHVVDA 113 (396)
T ss_pred CCCCCCCC-CCCCCHHHHHHHHHCCEEEEEEEC
T ss_conf 56765011-687608999988726879999753
No 102
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.70 E-value=1.4e-16 Score=127.21 Aligned_cols=152 Identities=24% Similarity=0.291 Sum_probs=103.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH---CC------------------C---EEEECC------CCCCEEEEEEEEEEE
Q ss_conf 68512189983389986889999986---89------------------2---021058------888602127899973
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFV---GA------------------K---VSIVTH------KVQTTRSIVRGIVSE 67 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~---g~------------------~---vsivS~------k~~TTr~~i~gi~~~ 67 (311)
+......|+++|...+|||||+-+|+ |. . .|-+-+ .-+.|-+.-...+..
T Consensus 3 ~~K~~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~ 82 (426)
T PRK12317 3 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 82 (426)
T ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEEC
T ss_conf 98978499999522876888876898772994489999999899864877521432125786687558278831699954
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH--HHHCCHHHHHHHHHHCCCC-CEEEEEECCCHH
Q ss_conf 9948999987984010123575321002345555321001100001--0000000122345442872-025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSR-LILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~--~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~ 144 (311)
++..+.|+|+|| |+.+.+.....+..+|++++||||++ +...+..+.+..+...+.| +|+++||+|+++
T Consensus 83 ~~~~~~iiD~PG--------H~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~ 154 (426)
T PRK12317 83 DKYYFTIIDCPG--------HRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 154 (426)
T ss_pred CCCEEEEEECCC--------CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 981699987896--------366787787453467727999963656676477899999999809983999995333567
Q ss_pred --HHHHHH---HHHHHHHCCCC----CCCCCCCCCCCCCHHH
Q ss_conf --434578---88864100123----3431100013874267
Q gi|254780941|r 145 --PERLLE---QAEIANKLVFI----EKTFMVSATKGHGCDD 177 (311)
Q Consensus 145 --~~~l~~---~~~~~~~~~~~----~~i~~ISAk~g~Gid~ 177 (311)
++...+ ....+.+..++ -.++|+||.+|+|+..
T Consensus 155 ~~~~~~~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~ 196 (426)
T PRK12317 155 YDEKRYNEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 196 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 788999999999999999709880347088753234656411
No 103
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=1.8e-16 Score=126.37 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=111.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE--E--------EEC-----CCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 21899833899868899999868920--2--------105-----88886021278999739948999987984010123
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKV--S--------IVT-----HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~v--s--------ivS-----~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
.-.|+++|.-.+|||||+-+|++.-. . -+. ..-+-|-+.-..-+..++..+.|+|+||
T Consensus 12 ~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PG------- 84 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPG------- 84 (394)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCC-------
T ss_conf 7499999512884898998975045450651022223311665562478217841899972883699988897-------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHH----HHHHCCCC
Q ss_conf 5753210023455553210011000010000000122345442872-025787211010434578888----64100123
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAE----IANKLVFI 161 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~----~~~~~~~~ 161 (311)
|+.+.+........+|.+++||||+++..++..+.+..+...+.| +|+++||+|+++++++.+.++ .+-...++
T Consensus 85 -H~~fi~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~~~l~~~g~ 163 (394)
T PRK12736 85 -HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred -CHHHHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -2543110444353466589999858774677999999999829991599998878998399999999999999987699
Q ss_pred ----CCCCCCCCCCCC--------CHHHHHHHHHHHCC
Q ss_conf ----343110001387--------42678999998366
Q gi|254780941|r 162 ----EKTFMVSATKGH--------GCDDVLNYLCSTLP 187 (311)
Q Consensus 162 ----~~i~~ISAk~g~--------Gid~L~~~L~~~lp 187 (311)
-.++++||.++. ++..|++.+.+.+|
T Consensus 164 ~~~~ip~i~~s~~~~~~~~~~~~~~i~~Ll~~ld~~~~ 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 91206099845436136887357789999999985277
No 104
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=3.1e-16 Score=124.91 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECCC------------CCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 8998338998688999998689-----20210588------------886021278999739948999987984010123
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KVSIVTHK------------VQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k------------~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
+|||+|...+||+||.-+|+-. +..-|.+. -|.|-......+..+++++.|+||||+.+
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~D---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH----
T ss_conf 9899968999988999999986687355815538975566848898768707336689998998999986969678----
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 57532100234555532100110000100000001223454428720257872110104345788886410012334311
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ 166 (311)
+...+..++.-+|.+++||||..+.......+++.+.+.+.|.++++||+|.-..+ ....++.+...++. .++|
T Consensus 77 ----F~~e~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad-~~~~l~~i~~~lg~-~~vp 150 (270)
T cd01886 77 ----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGA-NPVP 150 (270)
T ss_pred ----HHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCC-CEEE
T ss_conf ----89999999877555999984676442636999988998499989999887877887-16689999998589-7388
Q ss_pred CCC--CCCCCHHHHHHHHHHH
Q ss_conf 000--1387426789999983
Q gi|254780941|r 167 VSA--TKGHGCDDVLNYLCST 185 (311)
Q Consensus 167 ISA--k~g~Gid~L~~~L~~~ 185 (311)
++- -.|.++.-+.+.+...
T Consensus 151 ~~~Pig~g~~f~GvvDll~~k 171 (270)
T cd01886 151 LQLPIGEEDDFRGVVDLIEMK 171 (270)
T ss_pred EEEEECCCCCEEEEEECCCCE
T ss_conf 985632789747999778787
No 105
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=4.1e-16 Score=124.11 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=100.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECCC--CCCE--------------EEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 8998338998688999998689-----20210588--8860--------------2127899973994899998798401
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KVSIVTHK--VQTT--------------RSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k--~~TT--------------r~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
+|||+|...+||+||.-+|+=. +.--|..+ .+|| -.....-+..++.++.|+||||+.+
T Consensus 4 niai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~~D 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH
T ss_conf 79998479999899999999866863338546303688860468879998659448636378878998999997969778
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 01235753210023455553210011000010000000122345442872025787211010434578888641001233
Q gi|254780941|r 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE 162 (311)
Q Consensus 83 ~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~ 162 (311)
+...+.+++.-+|.+++|+||..+.......+++.+.+.++|.++++||+|....+ .....+.++..++.
T Consensus 84 --------F~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~ad-f~~~l~~i~~~lg~- 153 (267)
T cd04169 84 --------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIEEELGI- 153 (267)
T ss_pred --------HHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCC-
T ss_conf --------99999999988645479952566653558999999997299979998534567898-78999999998687-
Q ss_pred CCCCCC--CCCCCCHHHHHHHHHH
Q ss_conf 431100--0138742678999998
Q gi|254780941|r 163 KTFMVS--ATKGHGCDDVLNYLCS 184 (311)
Q Consensus 163 ~i~~IS--Ak~g~Gid~L~~~L~~ 184 (311)
.++|+. .-.+.++..+.+.+..
T Consensus 154 ~~vpi~lPig~~~~f~GvVDl~~~ 177 (267)
T cd04169 154 DCTPLTWPIGMGKDFKGVYDRRTG 177 (267)
T ss_pred CCCEEEEEECCCCCEEEEEECCCC
T ss_conf 751168775169944799986779
No 106
>PTZ00258 GTP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=127.63 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=71.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE-----------------EEEEEECCCCHHHCCC
Q ss_conf 89983389986889999986892021058888602127899973994-----------------8999987984010123
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-----------------QIVFLDTPGIFNAKDS 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~-----------------qiifvDTPG~~~~~~~ 86 (311)
.++|||.||||||||+|+|++..+ .+.+.|.||-++..|+...++. ++-|+|.||++...+.
T Consensus 24 ~iGivGlPNvGKSTlFnAlT~~~v-~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ipa~ve~vDIAGLV~GAs~ 102 (392)
T PTZ00258 24 KMGIVGLPNVGKSTTFNALSKQQV-PAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVPATLDIVDIAGLVKGASK 102 (392)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
T ss_conf 567866999978999999877997-4248998887783279967845688998751877610146899973455787302
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 57532100234555532100110000
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSH 112 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~ 112 (311)
++-+-...++.+.+||++++|||+.
T Consensus 103 -G~GLGNkFL~~iR~~DaiihVVR~F 127 (392)
T PTZ00258 103 -GEGLGNAFLSHIRACDGIYHVVRAF 127 (392)
T ss_pred -CCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf -6885189999988400799999872
No 107
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=99.69 E-value=7e-17 Score=129.07 Aligned_cols=155 Identities=20% Similarity=0.241 Sum_probs=113.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCC-CCCEEEEE--------------E---EEEEECC----EEEEEEECCCCH
Q ss_conf 899833899868899999868920210588-88602127--------------8---9997399----489999879840
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHK-VQTTRSIV--------------R---GIVSEKE----SQIVFLDTPGIF 81 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k-~~TTr~~i--------------~---gi~~~~~----~qiifvDTPG~~ 81 (311)
+||||=.--.||+||+-+|+.|--. +=+- .+-...++ + ..+.+++ +.|-+|||||
T Consensus 3 NIAIIAHVDHGKTTLVD~LL~Qsgf-~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPG-- 79 (609)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGF-TFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPG-- 79 (609)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHH-HHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCC--
T ss_conf 1899988069943689888887658-8641588321354067652100155201300366252889718997781689--
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHH----
Q ss_conf 101235753210023455553210011000010000000122345442872025787211010--43457888864----
Q gi|254780941|r 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEIA---- 155 (311)
Q Consensus 82 ~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~~---- 155 (311)
|.-|--.+.+.+.-+|.+++||||.+++.++....+++..+.+.+.|+|+||+|+.+ ++.+....-.+
T Consensus 80 ------HADFGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~L 153 (609)
T TIGR01394 80 ------HADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIEL 153 (609)
T ss_pred ------CCCCCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf ------88788658873302405899985788898853478999995689369997134788788378875787888853
Q ss_pred ---HHCCCCCCCCCCCCCCC---------------CCHHHHHHHHHHHCCC
Q ss_conf ---10012334311000138---------------7426789999983662
Q gi|254780941|r 156 ---NKLVFIEKTFMVSATKG---------------HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 156 ---~~~~~~~~i~~ISAk~g---------------~Gid~L~~~L~~~lpe 188 (311)
.+.++| +++|-||+.| ++++.|.+.|.++.|.
T Consensus 154 gA~deQLDF-P~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPa 203 (609)
T TIGR01394 154 GADDEQLDF-PIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPA 203 (609)
T ss_pred CCCCCCCCH-HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 888001012-56766523672014466577887220178999898640688
No 108
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=3.1e-16 Score=124.91 Aligned_cols=182 Identities=20% Similarity=0.275 Sum_probs=112.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECC------C------CCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 8998338998688999998689-----2021058------8------886021278999739948999987984010123
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KVSIVTH------K------VQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~vsivS~------k------~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
+|||+|.+.+||+||.-+|+-. +..-|.. . -|.|-......+..+++++.|+||||..+
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~D---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHH----
T ss_conf 9899908999989999999996699665765458973577878898679675135578888997999986989757----
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 57532100234555532100110000100000001223454428720257872110104345788886410012334311
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ 166 (311)
+...+.+++.-+|.+++|+||..+...+...+++.+.+.+.|.++++||+|....+ .....+.++..++. .++|
T Consensus 77 ----F~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad-~~~~l~~i~~~lg~-~~vp 150 (268)
T cd04170 77 ----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERAD-FDKTLAALQEAFGR-PVVP 150 (268)
T ss_pred ----HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCC-CEEE
T ss_conf ----99999998404783999941875476879999999998599989999787878996-47799999998689-8499
Q ss_pred CC--CCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCHHHHH-HHHHHHHHHHHHH
Q ss_conf 00--01387426789999983662235689643---343025678-9987599999973
Q gi|254780941|r 167 VS--ATKGHGCDDVLNYLCSTLPLAPWVYSADQ---ISDLPMFHF-TAEITREKLFLHL 219 (311)
Q Consensus 167 IS--Ak~g~Gid~L~~~L~~~lpe~~~~y~~~~---~Td~~~~~~-i~EiIREki~~~l 219 (311)
+. .-.|.++..+.+.+ ....|.|+++. ..+.|.... -.+-.|+.+++.+
T Consensus 151 ~~~Pig~g~~f~GvvDl~----~~~a~~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~v 205 (268)
T cd04170 151 LQLPIGEGDDFKGVVDLL----TEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAV 205 (268)
T ss_pred EEEEECCCCCCEEEEECC----CCEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 996652688714887666----6779992399972270597788888999988889888
No 109
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=3.7e-16 Score=124.44 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=104.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|.++||||||+.+++...--. ....-|.- +-..-+++.++ ..+.|.||||- +.+.......+.
T Consensus 2 KIv~vGd~~VGKTsli~r~~~~~f~~-~~~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~--------e~~~~l~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ--------ERFRSVTHAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCCCCCHHHHHH
T ss_conf 89999949987999999999597899-986776524779999999999999999979986--------334646477711
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-0001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+- .....+..+. ..+.|+++|.||+|+.....+ .+..+.+....+. ..|.+||++|.||
T Consensus 73 ~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~-~f~EtSAkt~~nI 151 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKTGLNV 151 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 777789997279889999999999999986667853898612465530267999999999998299-7999854898097
Q ss_pred HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 678999998366223568964
Q gi|254780941|r 176 DDVLNYLCSTLPLAPWVYSAD 196 (311)
Q Consensus 176 d~L~~~L~~~lpe~~~~y~~~ 196 (311)
+++...|++.+....+..|+.
T Consensus 152 ~e~F~~i~~~i~~~~~~~~~~ 172 (191)
T cd04112 152 ELAFTAVAKELKHRKYEQPDE 172 (191)
T ss_pred HHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999998742279988
No 110
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=2.4e-16 Score=125.63 Aligned_cols=161 Identities=21% Similarity=0.351 Sum_probs=115.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC-----------EEEECCCCCCE--------------------EEEEE----EE
Q ss_conf 512189983389986889999986892-----------02105888860--------------------21278----99
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAK-----------VSIVTHKVQTT--------------------RSIVR----GI 64 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~-----------vsivS~k~~TT--------------------r~~i~----gi 64 (311)
+-.-+|+.+|.-..|||||+.||+|-. ++|--..++.. .+.-. |.
T Consensus 35 q~~vNIGtiGHVDHGKTTLvkALTgv~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c~~ 114 (460)
T PTZ00327 35 QATINIGTIGHVAHGKSTVVKALSGVKTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGCGH 114 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 88218988746289899999998677501065678758721205433011136567763101014666655544555565
Q ss_pred EEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HCCHHHHHHHHHHCCCC-CEEEEEECCC
Q ss_conf 973994899998798401012357532100234555532100110000100-00000122345442872-0257872110
Q gi|254780941|r 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILNKIDC 142 (311)
Q Consensus 65 ~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~-~~~~~~il~~l~~~~~p-~IiVlNKiDl 142 (311)
.......+.|+|.|| |+.+++...+.....|.+++||+|++++ .++..+.+..+...+.+ +++++||+|+
T Consensus 115 ~~t~~Rh~s~VDcPG--------H~~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK~Dl 186 (460)
T PTZ00327 115 KMTLKRHVSFVDCPG--------HDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDL 186 (460)
T ss_pred CCCCCEEEEEEECCC--------HHHHHHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 431220489986898--------799999987476337679999986888876468999999997289719999535445
Q ss_pred HHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 104345788886410012-----3343110001387426789999983662
Q gi|254780941|r 143 VKPERLLEQAEIANKLVF-----IEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 143 v~~~~l~~~~~~~~~~~~-----~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
+++++..+..+...+++. ...|+|+||..+.|++.|++.|.+++|.
T Consensus 187 V~~e~~~~~~~ei~~~l~~t~~~~~PIIpvSA~~~~nid~L~~~i~~~ip~ 237 (460)
T PTZ00327 187 IKEVQALDQYEEIRNFIDGTIAENAPIIPISAQLKYNIDVLLEYICTQIPI 237 (460)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCCCHHHHHHHHHHHCCC
T ss_conf 588999999999999852576779998756544505879999999975899
No 111
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=3.5e-16 Score=124.57 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=103.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101235753210023455553
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
..|.++|..||||||++++|.+.+...+.|..+.+.. .+..++..+.+.|..|-..-+ ..-.....++
T Consensus 18 ~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~e----~~~~~~~~~~~wDlgG~~~~R--------~lW~~Yy~~~ 85 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE----ELAIGNIKFTTFDLGGHQQAR--------RLWKDYFPEV 85 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEECCEEEEEEECCCCHHHH--------HHHHHHHCCC
T ss_conf 4799996588988999999806997530578788648----999999999999889877788--------9999882167
Q ss_pred HHHCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHH--HC-----CCCCCCCCC
Q ss_conf 210011000010000-----000122345442872025787211010---434578888641--00-----123343110
Q gi|254780941|r 103 DIVCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIAN--KL-----VFIEKTFMV 167 (311)
Q Consensus 103 Diil~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~--~~-----~~~~~i~~I 167 (311)
|.++||||+++...- ....++..-.-.+.|++++.||.|+.. .+++.+...... .. ...-.++++
T Consensus 86 ~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i~~~ 165 (184)
T smart00178 86 NGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMC 165 (184)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEEEEE
T ss_conf 58999972686889999999999986467655970999997567778999999998819512326557667763199973
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
||.+|+|+++-+++|.++.
T Consensus 166 SA~tG~Gl~egl~WLs~~i 184 (184)
T smart00178 166 SVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred ECCCCCCHHHHHHHHHHHC
T ss_conf 5607978699999998409
No 112
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=8.7e-17 Score=128.46 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=71.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE------------------EEEEEECCCCHHHC
Q ss_conf 189983389986889999986892021058888602127899973994------------------89999879840101
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES------------------QIVFLDTPGIFNAK 84 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~------------------qiifvDTPG~~~~~ 84 (311)
..++|||.||||||||+|+++... +-+.+.|.||-++..|+....+. .+-|+|.+|+....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCC
T ss_conf 426774189885888999997489-6424898542657732796473678999875389974776104899824537885
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 2357532100234555532100110000
Q gi|254780941|r 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH 112 (311)
Q Consensus 85 ~~l~~~~~~~~~~~l~~aDiil~VvDa~ 112 (311)
++ ++-+-...++.+.++|++++|||+.
T Consensus 82 s~-GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SK-GEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CC-CCCCCHHHHHHHHHCCEEEEEEEEC
T ss_conf 46-8886478787655148589999853
No 113
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=2.3e-16 Score=125.70 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC------------------------EEEECCC------CCCEEEEEEEEEEECCEEEE
Q ss_conf 89983389986889999986892------------------------0210588------88602127899973994899
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK------------------------VSIVTHK------VQTTRSIVRGIVSEKESQIV 73 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~------------------------vsivS~k------~~TTr~~i~gi~~~~~~qii 73 (311)
+|+++|..++|||||+-+|+-.- .|-+.+. -+-|-+.-..-+..++..+.
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH-------HHCCHHHHHHHHHHCCCC-CEEEEEECCCHH-
Q ss_conf 99879840101235753210023455553210011000010-------000000122345442872-025787211010-
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-------LKVNIHDLLKEIAKRSSR-LILILNKIDCVK- 144 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~-------~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~- 144 (311)
|+|||| ++.+.+...+++..+|.+++||||.++ ...+..+.+..+...+.+ +|+++||+|++.
T Consensus 81 iiDtPG--------H~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~ 152 (219)
T cd01883 81 ILDAPG--------HRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCC--------CHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 987897--------266788999877531668999985767510366777659999999998499748999987536886
Q ss_pred ---HHH---HHHHHHHHHHCCCC----CCCCCCCCCCCCCHH
Q ss_conf ---434---57888864100123----343110001387426
Q gi|254780941|r 145 ---PER---LLEQAEIANKLVFI----EKTFMVSATKGHGCD 176 (311)
Q Consensus 145 ---~~~---l~~~~~~~~~~~~~----~~i~~ISAk~g~Gid 176 (311)
++. +......+.+..++ ..++||||..|+|+-
T Consensus 153 ~y~~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~ 194 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
T ss_conf 525999999999999999982999566159993367663046
No 114
>PRK12735 elongation factor Tu; Reviewed
Probab=99.68 E-value=3.4e-16 Score=124.62 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=109.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEE----------EECC-----CCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 218998338998688999998689202----------1058-----8886021278999739948999987984010123
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVS----------IVTH-----KVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vs----------ivS~-----k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
.-.|+++|.-++|||||+-+|++.-.. -+.. .-+-|-+.-..-+..++..+.|+|+||
T Consensus 12 ~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PG------- 84 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG------- 84 (396)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCC-------
T ss_conf 3499999426885898999986145452464312212211665674377379856999973980599983686-------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHH-HHH---HCCCC
Q ss_conf 5753210023455553210011000010000000122345442872-025787211010434578888-641---00123
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAE-IAN---KLVFI 161 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~-~~~---~~~~~ 161 (311)
++.+++........+|++++||||+++..++..+.+..+...+.+ +|+++||+|++++++..+.++ ... ...+|
T Consensus 85 -He~fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~~l~~~~f 163 (396)
T PRK12735 85 -HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred -HHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -6887766641004256799999868787531699999999839985899998758888199999999999999985599
Q ss_pred ----CCCCCCCCCCC----------CCHHHHHHHHHHHCCC
Q ss_conf ----34311000138----------7426789999983662
Q gi|254780941|r 162 ----EKTFMVSATKG----------HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 162 ----~~i~~ISAk~g----------~Gid~L~~~L~~~lpe 188 (311)
..++++||..+ .++.+|++.|-+.+|.
T Consensus 164 ~~~~~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~~~~ 204 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDAEWIGEAKILELMEALDSYIPT 204 (396)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 96647799967337225887434447799999998852678
No 115
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=2.5e-16 Score=125.47 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=97.6
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 83389986889999986892021058888602127899973--9948999987984010123575321002345555321
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
++|.+|||||||+|++++.... .+..+-|+.+........ ...++.++||||.... .......+..+|+
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--------RSLRRLYYRGADG 71 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH--------HHHHHHHHHHCCE
T ss_conf 9294996889999999719888-764687157899999999999999999985895115--------6789999753579
Q ss_pred HCCCCHHHHHHHCCHHH-----HHHHHHHCCCCCEEEEEECCCHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 00110000100000001-----223454428720257872110104345788--88641001233431100013874267
Q gi|254780941|r 105 VCLVVDSHRELKVNIHD-----LLKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 105 il~VvDa~~~~~~~~~~-----il~~l~~~~~p~IiVlNKiDlv~~~~l~~~--~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
+++|+|+++........ ........+.|+++|.||+|+......... ........ ...++++||++|.|+++
T Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~ 150 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKEL-GVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCCHHH
T ss_conf 99998658888899999999999997525898499998535615406688999999999878-98699984788839999
Q ss_pred HHHHHHH
Q ss_conf 8999998
Q gi|254780941|r 178 VLNYLCS 184 (311)
Q Consensus 178 L~~~L~~ 184 (311)
|.+.|.+
T Consensus 151 l~~~i~~ 157 (157)
T cd00882 151 LFEELAE 157 (157)
T ss_pred HHHHHHC
T ss_conf 9999859
No 116
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.68 E-value=1.3e-16 Score=127.45 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=48.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 685121899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
++.+...|+++|.||||||||+|+|.|++.++||+.|||||.... +. . +..+.++||||+
T Consensus 98 ~~~~~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q~-i~-~-~~~i~liDTPGi 157 (157)
T cd01858 98 SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY-IT-L-MKRIYLIDCPGV 157 (157)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EE-E-CCCEEEEECCCC
T ss_conf 555646999982588533688988726735886598833777799-99-6-899999969099
No 117
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=6.5e-16 Score=122.84 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEE-EEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 998338998688999998689202105888860212-789997399--48999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI-VRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~-i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
|+++|-++||||||++++++..-. +....|.-.. ..-+...++ .++.+.||+|--+ ...+ ....+.+
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~--~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~-----~~~l---~~~~~~~ 72 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----YDRL---RPLSYPD 72 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCC-----CCCC---HHHHHHH
T ss_conf 999994997699999999639899--97589664799999995499899999996999711-----0534---3445300
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-----HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434-----5788886410012334311000138
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-----LLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-----l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
||++++|.|.++..+-... ..+..+.. .+.|+++|.||+|+..... ..+..+.+.+..+....|.+||++|
T Consensus 73 a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y~EtSAk~g 152 (187)
T cd04132 73 VDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 34888950368767799999999999998689999799998722122122376578999999999859978999576889
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 742678999998366
Q gi|254780941|r 173 HGCDDVLNYLCSTLP 187 (311)
Q Consensus 173 ~Gid~L~~~L~~~lp 187 (311)
.|++++.+.|.+.+-
T Consensus 153 ~nV~e~F~~l~~~il 167 (187)
T cd04132 153 ENVEEVFDTAIEEAL 167 (187)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 298999999999998
No 118
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=4.2e-16 Score=124.07 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=110.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE----------EEE------CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC
Q ss_conf 21899833899868899999868920----------210------58888602127899973994899998798401012
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKV----------SIV------THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~v----------siv------S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~ 85 (311)
--.|+++|.-.+|||||+-+|++.-- ... ...-+-|-+.-..-+..++..+.|+|+||
T Consensus 12 ~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PG------ 85 (397)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAHVDCPG------ 85 (397)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCCC------
T ss_conf 32999991258889999999986666543853100133302576676258169987999972881499951786------
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHH-HHHH---CCC
Q ss_conf 35753210023455553210011000010000000122345442872-025787211010434578888-6410---012
Q gi|254780941|r 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAE-IANK---LVF 160 (311)
Q Consensus 86 ~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~-~~~~---~~~ 160 (311)
|+.+++........+|++++||||+++..++..+.+..+...+.| +|+++||+|++++++..+.++ .+.. ..+
T Consensus 86 --H~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i~~~l~~~~ 163 (397)
T PRK00049 86 --HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 163 (397)
T ss_pred --HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf --388899987301215679999974888665289999999980998279999866888859999999999999998469
Q ss_pred C----CCCCCCCCCCC----------CCHHHHHHHHHHHCC
Q ss_conf 3----34311000138----------742678999998366
Q gi|254780941|r 161 I----EKTFMVSATKG----------HGCDDVLNYLCSTLP 187 (311)
Q Consensus 161 ~----~~i~~ISAk~g----------~Gid~L~~~L~~~lp 187 (311)
| ..++|+||.++ .|+.+|++.+.+++|
T Consensus 164 f~~~~ipiv~~S~~~~~~~~~~~~~~~~i~~Ll~~ld~~~~ 204 (397)
T PRK00049 164 FPGDDTPIIRGSALKALEEIGDPEWEAKILELMEAVDSYIP 204 (397)
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98444768985500311477865317899999999986477
No 119
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=6.3e-16 Score=122.91 Aligned_cols=152 Identities=19% Similarity=0.258 Sum_probs=98.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 89983389986889999986892021058888602--1278999739--9489999879840101235753210023455
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
.|+++|.++||||||++++++..-. ...++|- +-..-.+..+ ..++.+.||||--+ +.......+
T Consensus 5 Kiv~lGd~~vGKTsli~r~~~~~f~---~~~~~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~--------~~~l~~~~~ 73 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKSGTFS---ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER--------FRTITQSYY 73 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC---CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCC--------CCCCCHHHE
T ss_conf 9999999995899999999649999---98799754378999999999999999998999834--------453507552
Q ss_pred HHHHHHCCCCHHHHHHHC-CHHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 553210011000010000-0001223454---428720257872110104345-78888641001233431100013874
Q gi|254780941|r 100 KHADIVCLVVDSHRELKV-NIHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~-~~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
.+||++++|.|.++..+- .....+..+. ..+.|+++|.||+|+.++..+ .+..+.+.+..+...+|.+||++|.|
T Consensus 74 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~~~~~~a~~~~~~~~~E~SAk~~~n 153 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 21566699713899899999999999999876999843888772376862899999999999983997699978885819
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
++++...|++.+
T Consensus 154 V~e~F~~la~~i 165 (165)
T cd01864 154 VEEAFLLMATEL 165 (165)
T ss_pred HHHHHHHHHHHC
T ss_conf 899999999849
No 120
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=7.1e-16 Score=122.57 Aligned_cols=153 Identities=23% Similarity=0.268 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-2127899973994--899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+++++...-.. ....|. .+-..-.++.++. ++.+.||+|-- .+.......+.
T Consensus 3 KivviGd~~vGKTsli~r~~~~~f~~--~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e--------~~~~~~~~~~~ 72 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE--------RYRSLAPMYYR 72 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 99999959968999999994398999--868866678899999999999999999799971--------00278898851
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
+||++++|.|.++..+-. ....+..+.+ .+.|+++|.||+|+..+..+ .+..+.+....+. ..+.+||++|.|+
T Consensus 73 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV 151 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKTGENV 151 (163)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 677149998189979999999999999985598723677553357565089999999999998299-7999862659078
Q ss_pred HHHHHHHHHHCC
Q ss_conf 678999998366
Q gi|254780941|r 176 DDVLNYLCSTLP 187 (311)
Q Consensus 176 d~L~~~L~~~lp 187 (311)
+++.+.|++.+|
T Consensus 152 ~e~F~~l~~~i~ 163 (163)
T cd01860 152 NELFTEIAKKLP 163 (163)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998583
No 121
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.67 E-value=1.1e-15 Score=121.29 Aligned_cols=152 Identities=22% Similarity=0.219 Sum_probs=96.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-. -...| |.-+...-.++.++ ..+.++||+|.-+ +.......+.+|
T Consensus 4 ivlvGd~~VGKTsli~rf~~~~f~-~~y~p-Ti~~~~~k~i~i~~~~~~l~iwDtaG~e~--------~~~~~~~~~~~a 73 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVFI-ESYDP-TIEDSYRKQVEIDGRQCDLEILDTAGTEQ--------FTAMRELYIKSG 73 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CCCCEEEEEEEECCEEEEEEEEECCCCCC--------CCCCHHHHHCCC
T ss_conf 999899997799999999619389-86588-33315999999999999999982788623--------334515451268
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|++++|.|.++..+-. ...+.+.+. ..+.|+++|.||+|+.++..+ .+....+....+....+.+||++|.|++
T Consensus 74 ~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~~e~~~~a~~~~~~~~~E~SAk~~~nV~ 153 (168)
T cd04177 74 QGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 66798536898889999999999999851788874898873146121376899999999997499779996248784689
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++.+.|++.+
T Consensus 154 e~F~~l~~~i 163 (168)
T cd04177 154 EVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 122
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.67 E-value=5.2e-16 Score=123.46 Aligned_cols=151 Identities=26% Similarity=0.310 Sum_probs=99.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEE-EEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9983389986889999986892021058888602127-89997399--48999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i-~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
|+++|.++||||||++++++..-. ...+.|+.... .-.++.++ ..+.+.||||-- .+.......+.+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~--~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~~--------~~~~~~~~~~~~ 72 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFN--EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE--------RYHALGPIYYRD 72 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCCHHHEEC
T ss_conf 999999996799999999839899--8767752647999999999999999999589973--------035563133011
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 32100110000100000-0012234544---28720257872110104345-7888864100123343110001387426
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
+|++++|.|.++..+-. ....+..+.. .+.|+++|.||+|+.++..+ .+....+.+..+. ..|.+||++|.|++
T Consensus 73 a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r~v~~~e~~~~a~~~~~-~y~e~Sak~g~nV~ 151 (162)
T cd04123 73 ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSAKTGKGIE 151 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHCCC-EEEEEECCCCCCHH
T ss_conf 44579996389989999999999999987699974686633213254088899999999998299-89998127881989
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++...|++.+
T Consensus 152 e~F~~l~~~i 161 (162)
T cd04123 152 ELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 123
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.67 E-value=9.4e-16 Score=121.78 Aligned_cols=151 Identities=21% Similarity=0.177 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEE-CCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 899833899868899999868920210-5888860212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIV-THKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsiv-S~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|.++||||||+++++...-... .+..+.+.... ....++ ..+-+.||||- +.+.......+.
T Consensus 2 KivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~--~~~~~~~~~~l~iwDtaG~--------e~f~~~~~~y~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKH--NAKFEGKTILVDFWDTAGQ--------ERFQTMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEE--EEEECCEEEEEEEEECCCC--------CCCCHHHHHHHC
T ss_conf 899999899678999999980977997266541579999--9999999999999979998--------434324699735
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 53210011000010000-00012234544--2872025787211010434578888641001233431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
+||++++|.|.++..+- .....++.+.. .+.|+++|.||+|+-.. ..+....+.+..+ ...|.+||++|.|+++
T Consensus 72 ~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~--~~~~~~~~a~~~~-~~f~etSAk~g~nV~e 148 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--VTQKKFNFAEKHN-LPLYYVSAADGTNVVK 148 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH--HHHHHHHHHHHCC-CEEEEEECCCCCCHHH
T ss_conf 687679999689778899999999999986869989999997117742--5899999999869-9199990783809799
Q ss_pred HHHHHHHHCC
Q ss_conf 8999998366
Q gi|254780941|r 178 VLNYLCSTLP 187 (311)
Q Consensus 178 L~~~L~~~lp 187 (311)
+.+.|.+.+-
T Consensus 149 ~F~~l~~~~i 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 124
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=1.5e-15 Score=120.54 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf 1218-99833899868899999868920210588886021278-999739--9489999879840101235753210023
Q gi|254780941|r 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSW 96 (311)
Q Consensus 21 ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~ 96 (311)
|.-| +.++|.++||||||++++++.+-+..+..| |...... -.+..+ ...+.+.||+|.-. ... ...
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~-Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~-----~~~---l~~ 72 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEVYGQEKYLILREVGEDEV-----AIL---LND 72 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEEEEECCEEEEEEEEECCCCHH-----HHH---HHH
T ss_conf 50899999999998899999999649998666567-546618999999899999999985565323-----556---658
Q ss_pred HHHHHHHHHCCCCHHHHHHHCC-HHHHHHHH-HHCCCCCEEEEEECCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 4555532100110000100000-00122345-44287202578721101043457-888864100123343110001387
Q gi|254780941|r 97 STIKHADIVCLVVDSHRELKVN-IHDLLKEI-AKRSSRLILILNKIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~~~~~~-~~~il~~l-~~~~~p~IiVlNKiDlv~~~~l~-~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
..+..||++++|.|.++..+-+ ..++.+.. .....|+++|.||+|+....++. ...+.+.+..+....+.+||++|.
T Consensus 73 ~~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~ 152 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 87546988999997998789999999999700568981899988655420375467769999998399966699832798
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 42678999998366
Q gi|254780941|r 174 GCDDVLNYLCSTLP 187 (311)
Q Consensus 174 Gid~L~~~L~~~lp 187 (311)
|++++...|++.+-
T Consensus 153 nv~~~F~~la~~a~ 166 (169)
T cd01892 153 SSNELFTKLATAAQ 166 (169)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999976
No 125
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.66 E-value=1.1e-15 Score=121.24 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=98.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739--9489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||++++++..-.- ...| |..+...-.+..+ ...+.++||+|-- .+.......+.+|
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~-~y~p-Ti~~~~~~~~~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~~~a 72 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVE-DYEP-TKADSYRKKVVLDGEDVQLNILDTAGQE--------DYAAIRDNYHRSG 72 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCCEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHHHC
T ss_conf 9999999988999999997198987-7488-5441689999999999999999898866--------2488999988637
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|++++|.|.++..+-. .......+. ....|+++|.||+|+.++..+ .+..+.+.+..+ ...+.+||++|.|++
T Consensus 73 ~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~E~SAk~g~nV~ 151 (164)
T cd04139 73 EGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG-VPYVETSAKTRQNVE 151 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCHH
T ss_conf 6889999779778899999999999986087886369873303233417789999999999839-989998268790889
Q ss_pred HHHHHHHHHCCC
Q ss_conf 789999983662
Q gi|254780941|r 177 DVLNYLCSTLPL 188 (311)
Q Consensus 177 ~L~~~L~~~lpe 188 (311)
++...|++.+.+
T Consensus 152 ~~F~~l~~~i~~ 163 (164)
T cd04139 152 KAFYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999972
No 126
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=8.8e-16 Score=121.97 Aligned_cols=153 Identities=21% Similarity=0.202 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 899833899868899999868920210588886021278999739--948999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|.++||||||++++++..-... ..|-...+...-.++.+ ...+.|.||||-.. +.......+.+
T Consensus 2 KivvvG~~~vGKTsli~r~~~~~f~~~-~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~--------~~~~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER--------FRTLTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCEEEEEEECCEEEEEEEEECCCCCC--------CCCCHHHHHHH
T ss_conf 899999799579999999963999998-487313342389999999999999999999842--------35342244132
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHHHH----CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 32100110000100000-0012234544----287202578721101043457888864100123343110001387426
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEIAK----RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
+|++++|.|+++..+-. ....+..+.. .+.|+++|.||+|+..+.-..+....+.+..+. ..+.+||++|.|++
T Consensus 73 a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~v~~~~~~~~a~~~~~-~y~e~Sak~g~nV~ 151 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNM-LFIETSAKTRDGVQ 151 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 15348997678265699999999999985688887378873104400068999999999998699-99997158681599
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++.+.|++.+
T Consensus 152 ~~F~~l~~~i 161 (161)
T cd01863 152 QAFEELVEKI 161 (161)
T ss_pred HHHHHHHHHC
T ss_conf 9999999709
No 127
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=8.6e-16 Score=122.05 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-21278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||++++++..-... . ..|. .+-..-.+..+ ..++.+.||+|- +.+.......+.
T Consensus 5 KivlvGd~~vGKTsli~r~~~~~f~~~-~-~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~--------e~~~~~~~~y~~ 74 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDSFNPS-F-ISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--------ERFRTITTAYYR 74 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC-C-CCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCHHHHHHHHHH
T ss_conf 999999999788999999960999998-6-898646889999999999999999989997--------001166799856
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+-. ....+..+.+ .+.|+++|.||+|+..+..+ .+..+.+.+..+. ..|.+||++|.|+
T Consensus 75 ~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~-~~~e~SAktg~nI 153 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAKANINV 153 (167)
T ss_pred HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCCCH
T ss_conf 505889955689879999999999999986699970576421245023077999999999998099-6999822579078
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
+++.+.|++.+.+
T Consensus 154 ~e~F~~l~~~i~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999970
No 128
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1e-15 Score=121.52 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=98.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 18998338998688999998689202105888860-21278999739--9489999879840101235753210023455
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
..|+++|-++||||||++++++..-..- ..| |. .+-..-.+..+ ..++.+.||+|-. .+.......+
T Consensus 8 ~KivllGd~~VGKTsli~r~~~~~f~~~-~~~-Tig~d~~~k~i~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~ 77 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGA-TIGVDFMIKTVEIKGEKIKLQIWDTAGQE--------RFRSITQSYY 77 (169)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCC-CCC-CCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHH
T ss_conf 8999999899799999999985989998-677-41247899999999999999999899984--------4451557774
Q ss_pred HHHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5532100110000100000-001223454---428720257872110104345-78888641001233431100013874
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
.++|++++|.|.++..+-. ....++.+. ....|+++|.||+|+.++..+ .+..+.+.+..+. ..|.+||++|.|
T Consensus 78 ~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~n 156 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAKESDN 156 (169)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 2366459981489888999999999999986898863897311343454178899999999998899-999986898808
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
|+++...|+..+
T Consensus 157 V~e~F~~la~~l 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999987
No 129
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=99.66 E-value=1.4e-16 Score=127.04 Aligned_cols=141 Identities=23% Similarity=0.356 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCC-CHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798-40101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG-~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
.|.+||++.+||+||.|+|-|..+- -.|- .+| +..+.. .||||| +.+ |+.....-.-+..||
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~~~--YKKT-------QAv-E~~~k~--~IDTPGEY~e-----nr~~Y~AL~vtaaDA 64 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIK--YKKT-------QAV-EYKDKE--AIDTPGEYVE-----NRRYYSALIVTAADA 64 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCC--EEEE-------EEE-EECCCC--CCCCCCCCCC-----CCCHHHHHHHHHHCC
T ss_conf 1788715888744354311687321--0233-------445-425888--6559850015-----752378888887210
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21001100001000000012234544287202578721101043457888864100123343110001387426789999
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
|+|++|.+++++...---.+...+ ..+|+|-+++|+|+.+.+.-.+..+..-...+..+||.||+....||++|.++|
T Consensus 65 d~i~lV~~a~~~~~~f~PgF~~~f--~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~~~iF~~~~~d~~G~~~l~~yL 142 (144)
T TIGR02528 65 DVIALVQSATDEESRFSPGFASIF--VKKEVIGIVTKIDLAEADKDIERAKRLLETAGAEKIFEISSVDEKGIEELVDYL 142 (144)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 236677357764223785000236--788634788403788773479999999872365433165077804589999984
Q ss_pred H
Q ss_conf 9
Q gi|254780941|r 183 C 183 (311)
Q Consensus 183 ~ 183 (311)
.
T Consensus 143 ~ 143 (144)
T TIGR02528 143 N 143 (144)
T ss_pred C
T ss_conf 4
No 130
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=4.7e-16 Score=123.76 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=102.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEE------------------------ECC------CCCCEEEEEEEEEEECCEEEEE
Q ss_conf 9983389986889999986892021------------------------058------8886021278999739948999
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSI------------------------VTH------KVQTTRSIVRGIVSEKESQIVF 74 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsi------------------------vS~------k~~TTr~~i~gi~~~~~~qiif 74 (311)
++++|...+|||||+-+|+-+--++ +-+ .-+-|-+.-......++.+++|
T Consensus 2 ~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~i 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEEE
T ss_conf 69997488988899999999829967899999998875416763000343468687882697941058999819926999
Q ss_pred EECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHH--HHHHHH-
Q ss_conf 9879840101235753210023455553210011000010000000122345442872-025787211010--434578-
Q gi|254780941|r 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVK--PERLLE- 150 (311)
Q Consensus 75 vDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~--~~~l~~- 150 (311)
+|||| ++.+.+...+.+..+|++++||||+++..++..+.+..+...+.+ +|+++||+|+++ ++...+
T Consensus 82 iDtPG--------H~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~f~~i 153 (208)
T cd04166 82 ADTPG--------HEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred EECCC--------CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH
T ss_conf 87896--------2889999999986377479999758887278999999999749983999998857689998999999
Q ss_pred --HHHHHHHCCC--CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --8886410012--33431100013874267899999836622356896
Q gi|254780941|r 151 --QAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 (311)
Q Consensus 151 --~~~~~~~~~~--~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~ 195 (311)
....+-+..+ ...++||||.+|+|+-+ .-+.-||+--+
T Consensus 154 ~~~~~~~l~~~~~~~~~~IPiSa~~GdNi~~-------~s~~~~WY~G~ 195 (208)
T cd04166 154 VADYLAFAAKLGIEDITFIPISALDGDNVVS-------RSENMPWYSGP 195 (208)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-------CCCCCCCCCCC
T ss_conf 9999999997499887199812677888786-------99999898883
No 131
>CHL00071 tufA elongation factor Tu
Probab=99.66 E-value=1e-15 Score=121.53 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=107.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEE----------E-----CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 2189983389986889999986892021----------0-----588886021278999739948999987984010123
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSI----------V-----THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsi----------v-----S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
.-.|+++|.-.+|||||+-+|++..... + ...-+-|.+.-..-+..++..+.|+|+||
T Consensus 12 ~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PG------- 84 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG------- 84 (409)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCC-------
T ss_conf 6999999545883999999986453004513343155323797687369448802489962875999986796-------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHHHH-HHHH---CCCC
Q ss_conf 57532100234555532100110000100000001223454428720257-87211010434578888-6410---0123
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKIDCVKPERLLEQAE-IANK---LVFI 161 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiV-lNKiDlv~~~~l~~~~~-~~~~---~~~~ 161 (311)
|+.+.+.+......+|.+++||||+++..++..+.+..+...+.|.++| +||+|++++++..+..+ .... ..++
T Consensus 85 -H~~fv~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~~g~ 163 (409)
T CHL00071 85 -HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDKYDF 163 (409)
T ss_pred -HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -7899999875230158128999868788500499999999739993655555679854899999999999999997399
Q ss_pred ----CCCCCCCCCCCC------------------CHHHHHHHHHHHCC
Q ss_conf ----343110001387------------------42678999998366
Q gi|254780941|r 162 ----EKTFMVSATKGH------------------GCDDVLNYLCSTLP 187 (311)
Q Consensus 162 ----~~i~~ISAk~g~------------------Gid~L~~~L~~~lp 187 (311)
-.++|+||..+. ++..|++.|...+|
T Consensus 164 ~~~~i~~vp~sa~~~~~~~~~~~~~~~~~~~w~~~~~~Ll~~l~~~~p 211 (409)
T CHL00071 164 PGDEIPIVAGSALLALEALIENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCCCCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 845560896521332343125875455656124479999998872377
No 132
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=6.5e-16 Score=122.82 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=97.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+++++..+... ....|.- +-..-.+..++ .++.+.||||-- .+.......+.
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e--------~~~~l~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE--------RFRSITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 89999989977999999994199999--868845666677999999999999999679944--------66477998833
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-0001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+- .....+..+. ..+.|+++|.||+|+..+..+ .+..+.+.+..+. ..+.+||++|.|+
T Consensus 72 ~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAk~~~~v 150 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAKTNTNV 150 (164)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 665368843689989999999999999986799982551164568565187999999999998499-7999831669088
Q ss_pred HHHHHHHHHHCC
Q ss_conf 678999998366
Q gi|254780941|r 176 DDVLNYLCSTLP 187 (311)
Q Consensus 176 d~L~~~L~~~lp 187 (311)
+++.+.|++.+-
T Consensus 151 ~e~F~~l~~~i~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 133
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.66 E-value=7.4e-16 Score=122.48 Aligned_cols=148 Identities=23% Similarity=0.238 Sum_probs=98.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555321
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
|.++|..|||||||+++|.+....-+.|..+.. ...+..++..+.+.|.+|--+ +...-.....++|.
T Consensus 2 ililGLd~aGKTTil~~l~~~~~~~~~PT~G~~----~~~~~~~~~~l~~~DlgG~~~--------~R~lW~~Y~~~~~g 69 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN--------FRGIWVNYYAEAHG 69 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCHH--------HHHHHHHHCCCCCE
T ss_conf 899900899889999998289987650877731----799998999999998998778--------88999987347765
Q ss_pred HCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHH---HCCCCCCCCCCCCCCCC
Q ss_conf 0011000010000-----000122345442872025787211010---434578888641---00123343110001387
Q gi|254780941|r 105 VCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIAN---KLVFIEKTFMVSATKGH 173 (311)
Q Consensus 105 il~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~---~~~~~~~i~~ISAk~g~ 173 (311)
++||||+++...- ....++..-.-.++|++++.||.|+.. .+++.+...... .......|+++||++|+
T Consensus 70 IIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~tG~ 149 (167)
T cd04161 70 LVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEECCC
T ss_conf 79998557588999999999999658877899599998865761589999999881974240899863799957644488
Q ss_pred C------HHHHHHHHHH
Q ss_conf 4------2678999998
Q gi|254780941|r 174 G------CDDVLNYLCS 184 (311)
Q Consensus 174 G------id~L~~~L~~ 184 (311)
| +++=++||.+
T Consensus 150 G~~~~~~l~eGl~WL~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCCCCHHHHHHHHHC
T ss_conf 87876631549989864
No 134
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=8e-16 Score=122.22 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=98.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+++++..+-... ...|. .+-..-.++.++ ..+.+.||+|- +.+.......+.
T Consensus 2 Kivl~Gd~~vGKTsli~r~~~~~f~~~--~~~Tig~~~~~k~~~~~~~~~~l~iwDtaG~--------e~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED--SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--------ERFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------HHHHHHHHHHHH
T ss_conf 899999499679999999972989998--7997645789999999999999999989997--------012267899840
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-00012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+- .....+..++. .+.|+++|.||+|+.++..+ .+..+.+.+..+. ..|.+||++|.|+
T Consensus 72 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV 150 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSALTGENV 150 (161)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 577789953689889999999999999986799964986034344000378899999999998599-7999741569058
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+++...|++.+
T Consensus 151 ~e~F~~la~~i 161 (161)
T cd04113 151 EEAFLKCARSI 161 (161)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999709
No 135
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=4.4e-15 Score=117.47 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=89.7
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCC-----CEEEECCCC------------CCEEEEEEEEEEECCEEEEEEECC
Q ss_conf 436851218998338998688999998689-----202105888------------860212789997399489999879
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGA-----KVSIVTHKV------------QTTRSIVRGIVSEKESQIVFLDTP 78 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~------------~TTr~~i~gi~~~~~~qiifvDTP 78 (311)
..|+.| +|+|+|.--+||+||.-+|+-. +..-|.... +.|-......+..+++.|.|+|||
T Consensus 6 ~~e~IR--Ni~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTP 83 (693)
T PRK12739 6 PLEKTR--NIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTP 83 (693)
T ss_pred CHHHCE--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECC
T ss_conf 578813--999990799898999999999769856573343897568780999875986745527784599899999496
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 84010123575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 79 G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
|..+ +...+..++.-+|.+++|||+..+...+.+.+++++.+.+.|.++++||+|+.
T Consensus 84 GHvD--------F~~EV~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~ 140 (693)
T PRK12739 84 GHVD--------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI 140 (693)
T ss_pred CCCH--------HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9740--------58999999998487999997898876779999999998698969999797889
No 136
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=8.9e-16 Score=121.94 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-1278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+++++...-. .....|.- +-..-.+..+ ..++-+.||+|- +.+.......+.
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~f~--~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGq--------e~f~~l~~~y~r 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ--------ERFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCCCCCHHHHHC
T ss_conf 8999998998989999999639889--972563450589999999999999999989999--------746644377732
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHH-H---HCCCCCEEEEEECCCHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 532100110000100000-00122345-4---428720257872110104345---788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEI-A---KRSSRLILILNKIDCVKPERL---LEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l-~---~~~~p~IiVlNKiDlv~~~~l---~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+||++++|.|.++..+-. ....++.+ + ....|+++|.||+|+..+.+. ......+....+ ...|.+||++|
T Consensus 72 ~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~-~~~~E~SAk~g 150 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSG 150 (170)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 78758999978987899999999999998508999829999984137987557644899999998779-87999855788
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
.||+++.+.|++.+-+
T Consensus 151 ~nV~e~F~~ia~~~~e 166 (170)
T cd04108 151 ENVREFFFRVAALTFE 166 (170)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 1879999999999986
No 137
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.65 E-value=2.1e-15 Score=119.47 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=98.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-. .....|..+...-.+..++ .++.+.||+|-.+ +.......+.++
T Consensus 3 iv~vGd~~vGKTsli~r~~~~~f~--~~y~~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~--------~~~~~~~~~~~a 72 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE--------FSAMRDQYMRTG 72 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC--------HHHHHHHHCCCC
T ss_conf 999999997899999999729799--8778813678999999999999999998999710--------356777753798
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|++++|.|.++..+-. ...+...+. ..+.|+++|.||+|+..+..+ .+..+.+.+..+. ..+.+||++|.|++
T Consensus 73 ~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~g~nV~ 151 (164)
T smart00173 73 EGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAKERVNVD 151 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 77999830798899999999999999861888886687775346301178999999999998399-89998589881789
Q ss_pred HHHHHHHHHCC
Q ss_conf 78999998366
Q gi|254780941|r 177 DVLNYLCSTLP 187 (311)
Q Consensus 177 ~L~~~L~~~lp 187 (311)
++.+.|++.+.
T Consensus 152 ~~F~~l~~~i~ 162 (164)
T smart00173 152 EAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996
No 138
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=1e-15 Score=121.59 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=96.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-1278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+++++..+-. .....|+- +-..-.++.+ ..++.+.||||-- .+.......+.
T Consensus 7 KivvlGd~~VGKTsli~r~~~~~f~--~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~~ 76 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFD--TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE--------RFRSLRTPFYR 76 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHEE
T ss_conf 9999999997899999999739899--9888876079899999999999999999899972--------43524176600
Q ss_pred HHHHHCCCCHHHHHHHCCHH-HHHHHHH-------HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000000-1223454-------428720257872110104345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIH-DLLKEIA-------KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~-~il~~l~-------~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+||++++|.|.++..+-... ...+.+. ....|+++|.||+|+-++.-..+..+.+....+....|.+||++|
T Consensus 77 ~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v~~~e~~~~a~~~~~~~~~E~SAk~g 156 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDA 156 (170)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 47733999978887999999999999999714457888409999611113037889999999999859978999888888
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7426789999983
Q gi|254780941|r 173 HGCDDVLNYLCST 185 (311)
Q Consensus 173 ~Gid~L~~~L~~~ 185 (311)
.|++++.+.+++.
T Consensus 157 ~nV~~~F~~l~~~ 169 (170)
T cd04116 157 TNVAAAFEEAVRR 169 (170)
T ss_pred CCHHHHHHHHHHC
T ss_conf 1889999999953
No 139
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.65 E-value=2e-15 Score=119.71 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=98.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|.++||||||+++++..... -...| |.- +-..-.+..++ ..+-+.||+|-- .+.......+.
T Consensus 8 KIvllGd~~VGKTsLi~r~~~~~F~-~~y~p-Tig~d~~~~~~~~~~~~i~l~IwDTaGqe--------~f~sl~~~yyr 77 (209)
T PTZ00132 8 KLILVGDGGVGKTTFVKRHLTGEFE-KKYIA-TLGVEVHPLKFYTNRGKICFNVWDTAGQE--------KFGGLRDGYYI 77 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCCCHHHC
T ss_conf 9999999996789999999719969-98777-60279899999999999999999899974--------45566514424
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 532100110000100000-0012234544--2872025787211010434578888641001233431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
+++++++|.|.++..+-. ....++.+.+ .+.|+++|.||+|+.++....+..+ +.+..+ ...|.+||++|.|+++
T Consensus 78 ~a~~~ilVfDit~~~SF~~l~~W~~ei~~~~~~ipivLVGNK~DL~~r~V~~~~~~-~a~~~~-~~f~EtSAKtg~NV~e 155 (209)
T PTZ00132 78 KGQCAIIMFDVTSRITYKNVPNWHRDITRVCENIPIVLVGNKVDVKDRQVKAKQIT-FHRKKN-LQYYDISAKSNYNFEK 155 (209)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHH-HHHHCC-CEEEEEECCCCCCHHH
T ss_conf 89889998437887899999999999998689987899976232241355799999-999879-9899972689939799
Q ss_pred HHHHHHHHCCCC
Q ss_conf 899999836622
Q gi|254780941|r 178 VLNYLCSTLPLA 189 (311)
Q Consensus 178 L~~~L~~~lpe~ 189 (311)
+...|++.+...
T Consensus 156 ~F~~Lar~il~~ 167 (209)
T PTZ00132 156 PFLWLARRLAND 167 (209)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998479
No 140
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.65 E-value=3.2e-15 Score=118.36 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=98.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|.++||||||++++++..-. .....|.-+...-..+.++ ..+.+.||+|-- .+.......+.+
T Consensus 4 Kiv~lGd~~VGKTsli~r~~~~~f~--~~y~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~~ 73 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE--------EFSAMREQYMRT 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHCC
T ss_conf 9999999997889999999809898--756784135899999999999999999898860--------312567987346
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 32100110000100000-001223454----428720257872110104345-788886410012334311000138742
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
||++++|.|.++..+-. ...++..+. ..+.|+++|.||+|+..+..+ .+..+.+.+..+. ..|.+||++|.|+
T Consensus 74 a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~Vs~~e~~~~a~~~~~-~~~E~SAk~~~nV 152 (164)
T cd04145 74 GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKDRLNV 152 (164)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 787468985673543999999999999861887775265303457354088999999999998199-8999854868277
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+++.+.|++..
T Consensus 153 ~e~F~~l~~~I 163 (164)
T cd04145 153 DKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999975
No 141
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=1.7e-15 Score=120.05 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|.++||||||++++++..-.. ....|. .+-..-.+..++ ..+.+.||||-- .+.......+.
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~f~~--~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~l~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE--------RFQSLGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHH
T ss_conf 89999989978999999995298898--757755516999999999999999999699983--------11068899865
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHH----H---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 532100110000100000-00122345----4---428720257872110104345-78888641001233431100013
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEI----A---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l----~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
+||++++|.|.++..+-. .....+.+ . ....|+++|.||+|+.++..+ .+..+.+.+..+....+.+||++
T Consensus 72 ~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~~E~SAk~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred HCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 27579999338998999999999999999727677657638999633683641899999999999976997899975267
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 87426789999983662
Q gi|254780941|r 172 GHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 172 g~Gid~L~~~L~~~lpe 188 (311)
|.|++++.+.|++.+-+
T Consensus 152 ~~nV~e~F~~l~~~~l~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 91989999999999998
No 142
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=4.4e-16 Score=123.89 Aligned_cols=157 Identities=24% Similarity=0.364 Sum_probs=105.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE-------EEEEE----------E--------EECCEEEEEEECC
Q ss_conf 899833899868899999868920210588886021-------27899----------9--------7399489999879
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-------IVRGI----------V--------SEKESQIVFLDTP 78 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~-------~i~gi----------~--------~~~~~qiifvDTP 78 (311)
+|||+|....|||||+.+|+.+.=.+.....+.+|. .-+|+ + ..+++-+.|+|||
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH------HHHHH----
Q ss_conf 84010123575321002345555321001100001000000012234544287202578721101------04345----
Q gi|254780941|r 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV------KPERL---- 148 (311)
Q Consensus 79 G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv------~~~~l---- 148 (311)
|..+ +...+.+++.-+|.+++||||.++...+...++++..+.+.|.++++||+|++ ++++.
T Consensus 82 GH~d--------F~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~el~l~p~day~~l 153 (222)
T cd01885 82 GHVD--------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRL 153 (222)
T ss_pred CHHH--------HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHHHHHH
T ss_conf 5698--------99999999985681799610457857789999999998599979999890365001179989999999
Q ss_pred HHHHHHHHHC----------------CCC----CCCCCCCCCCCCCHH--------HHHHHHHHHCCC
Q ss_conf 7888864100----------------123----343110001387426--------789999983662
Q gi|254780941|r 149 LEQAEIANKL----------------VFI----EKTFMVSATKGHGCD--------DVLNYLCSTLPL 188 (311)
Q Consensus 149 ~~~~~~~~~~----------------~~~----~~i~~ISAk~g~Gid--------~L~~~L~~~lpe 188 (311)
...++..+.. ..+ ..|.+.||+.|.+.+ .|++.+.+++|+
T Consensus 154 ~~iie~vN~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l~~fa~ly~ll~~iv~~iP~ 221 (222)
T cd01885 154 ARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999999872304330355321020777783899983237712675412189999999962899
No 143
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65 E-value=2e-15 Score=119.66 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=99.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-127899973--994899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|-++||||||++++++..-. .....|.- +-..-.+.. ...++-+.||+|- +.+.......+.
T Consensus 2 KIvllGd~gVGKTsLi~rf~~~~F~--~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGq--------e~f~sl~~~yyr 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ--------ERFNSITSAYYR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------CCCCCCHHHHHH
T ss_conf 8999997997299999999549999--987997646889999999999999999979886--------124523578876
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
+|+++++|.|.++..+-+ ....++.+. ..+.|+++|-||+|+.....+ .+..+.+...+.....|.+||++|.||
T Consensus 72 ~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~Vs~~e~~~~A~~~~~~~f~EtSAkt~~nV 151 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred HHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 41445899856888999999999999997466887189876536505317879999999998279988999258999698
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 67899999836622
Q gi|254780941|r 176 DDVLNYLCSTLPLA 189 (311)
Q Consensus 176 d~L~~~L~~~lpe~ 189 (311)
+++...|.+.+-+.
T Consensus 152 ~e~F~~l~~~i~~~ 165 (202)
T cd04120 152 DEIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999985
No 144
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=1.6e-15 Score=120.31 Aligned_cols=152 Identities=21% Similarity=0.215 Sum_probs=99.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|-++||||||++++++..-... ..| |. .+-..-.+..++ .++.+.||+|- +.+.......+.
T Consensus 2 KIvllGd~~VGKTsli~r~~~~~f~~~-~~~-Tig~~~~~k~v~~~~~~i~l~iwDtaGq--------e~~~~~~~~y~r 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSS-HIS-TIGVDFKMKTIEVDGIKVRIQIWDTAGQ--------ERYQTITKQYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-CCC-CCEEEEEEEEEEECCEEEEEEEEECCCC--------CCCCCCHHHHHH
T ss_conf 899999499858999999942998998-788-7208988999999999999999979996--------023635588876
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-0001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+- .....++.+. ....|+++|.||+|+..+..+ .+..+.+.+..+ ...|.+||++|.|+
T Consensus 72 ~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~~~~~~a~~~~-~~~~etSAk~~~nV 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred HHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCH
T ss_conf 41688996148988999999999999998789986499987327878627799999999999869-97999677898298
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+++...|.+.+
T Consensus 151 ~e~F~~l~~~i 161 (161)
T cd04117 151 KESFTRLTELV 161 (161)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999649
No 145
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.65 E-value=3.3e-15 Score=118.22 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|-++||||||+++++...-.- ...| |.-+...-.+..++ ..+.+.||+|-- .+.......+.+|
T Consensus 4 vvlvGd~~VGKTsli~r~~~~~F~~-~y~~-Ti~~~~~k~~~i~~~~~~l~iwDtaG~e--------~~~~l~~~~~~~a 73 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNHFVD-EYDP-TIEDSYRKQVVIDGETCLLDILDTAGQE--------EYSAMRDQYMRTG 73 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCCEEEEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHCCC
T ss_conf 9998999988999999998392887-5688-5552799999999999999999799860--------1114789871578
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2100110000100000-001223454----42872025787211010434578888641001233431100013874267
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
|++++|.|.++..+-. ....+..+. ....|+++|.||+|+.++.--.+..+.+.+..+. ..+.+||++|.|+++
T Consensus 74 ~~~ilvydvt~~~Sf~~v~~w~~~i~~~~~~~~~piilVgNK~Dl~~r~V~~~e~~~~a~~~~~-~f~E~SAk~~~nV~e 152 (162)
T cd04138 74 EGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGI-PYIETSAKTRQGVEE 152 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHHH
T ss_conf 7799996179889999899999999985488885499997653564555889999999998099-899973899859899
Q ss_pred HHHHHHHHC
Q ss_conf 899999836
Q gi|254780941|r 178 VLNYLCSTL 186 (311)
Q Consensus 178 L~~~L~~~l 186 (311)
+.+.|++.+
T Consensus 153 ~F~~l~~~I 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHC
T ss_conf 999999963
No 146
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1e-15 Score=121.53 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|.++||||||++++++..-.. ....|. .+-..-.++.++ ..+.+.||+|-- .+.......+.
T Consensus 2 KivvvGd~~VGKTsli~r~~~~~f~~--~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~l~~~~~~ 71 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE--------RFRSLNNSYYR 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 79999999978999999995196899--868865403579999999999999999899971--------04578999863
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
+||++++|.|.++..+-. ....+..+. ....|+++|.||+|+.++..+ ....+.+.+..+. ..|.+||++|.||
T Consensus 72 ~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAktg~nV 150 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINV 150 (188)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 786799980389878999999999999987898662451001344766067999999999998699-8999747889098
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
+++.+.|++.+-+
T Consensus 151 ~e~F~~l~~~i~~ 163 (188)
T cd04125 151 EEAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 147
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.65 E-value=2.9e-15 Score=118.66 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=97.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||++++++..-. .....|.-+...-.++.++ ..+.++||+|-- .+.......+.++
T Consensus 4 IvlvGd~~VGKTsli~r~~~~~f~--~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~~a 73 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD--------EYSILPQKYSIGI 73 (180)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHHHC
T ss_conf 999998998899999999709789--985881244113799999999999999899870--------1006679998635
Q ss_pred HHHCCCCHHHHHHHCCH-HHHHH----HHHHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 21001100001000000-01223----454428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVNI-HDLLK----EIAKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~-~~il~----~l~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|.+++|.|.++..+-.. ..+.. .....+.|+++|.||+|+.....+ .+..+.+....+. ..|.+||++|.|++
T Consensus 74 ~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~f~EtSAk~g~nV~ 152 (180)
T cd04137 74 HGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESSARENENVE 152 (180)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 57899974388788999999999999975888886797765346244078899999999998399-89997768891989
Q ss_pred HHHHHHHHHCC
Q ss_conf 78999998366
Q gi|254780941|r 177 DVLNYLCSTLP 187 (311)
Q Consensus 177 ~L~~~L~~~lp 187 (311)
++.+.|++.+.
T Consensus 153 e~F~~l~~~i~ 163 (180)
T cd04137 153 EAFELLIEEIE 163 (180)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 148
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=3.9e-15 Score=117.78 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=99.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEEC-C--EEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 89983389986889999986892021058888602--1278999739-9--48999987984010123575321002345
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEK-E--SQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~-~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
-|+++|.++||||||+++++...-.- ...+|- +-..-.+..+ + ..+-+.||+|-- .+.......
T Consensus 2 KvvllGd~gVGKTsLi~rf~~~~F~~---~y~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe--------~~~~l~~~y 70 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ---HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE--------RFGGMTRVY 70 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCC--------CCCCCHHHH
T ss_conf 79999999978999999998299999---8888756778998999679819999998689983--------222003755
Q ss_pred HHHHHHHCCCCHHHHHHHCCH-HHHHHHH-------HHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 555321001100001000000-0122345-------4428720257872110104345-788886410012334311000
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNI-HDLLKEI-------AKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSA 169 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~-~~il~~l-------~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISA 169 (311)
+.+++++++|.|.++..+-.. ....+.+ .....|+++|.||+|+..+..+ .+.+..+.+..++...|.+||
T Consensus 71 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~~~~~~~~EtSA 150 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSA 150 (201)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 55776479998279889999899999999998621378987189986655641125689999999999779980999779
Q ss_pred CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1387426789999983662235
Q gi|254780941|r 170 TKGHGCDDVLNYLCSTLPLAPW 191 (311)
Q Consensus 170 k~g~Gid~L~~~L~~~lpe~~~ 191 (311)
++|.||+++.+.|++.+-+++.
T Consensus 151 ktg~nV~e~F~~l~~~i~~~~~ 172 (201)
T cd04107 151 KEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9994989999999999986653
No 149
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.65 E-value=1.9e-15 Score=119.75 Aligned_cols=168 Identities=16% Similarity=0.189 Sum_probs=105.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|-++||||||++++++..-. .....|.- +-..-.+..++ ..+-+.||+|-- .+.......+.
T Consensus 2 KivlvGd~~VGKTsLi~rf~~~~F~--~~y~~Tig~d~~~k~i~v~~~~v~l~iwDtaGqe--------~f~~~~~~y~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR--------EFINMLPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 8999999998989999999539999--9988873389899999999999999998677648--------78999999864
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHHC--CCCCEEEEEECCCHHH------HHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-000122345442--8720257872110104------34578888641001233431100013
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAKR--SSRLILILNKIDCVKP------ERLLEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~~--~~p~IiVlNKiDlv~~------~~l~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
+|+++++|.|.++..+- .....++.++.. ..+.|+|.||+|+..+ +.+......+....+ ...|.+||++
T Consensus 72 ~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~~-~~f~etSAk~ 150 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSH 150 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 787899999789989999899999999976899988999986635565562231024899999999849-9899994799
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 8742678999998366223568964334302
Q gi|254780941|r 172 GHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 (311)
Q Consensus 172 g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~ 202 (311)
|.|++++.+.|.+.+-+-+..-|+..-+++|
T Consensus 151 ~~nV~e~F~~i~~~i~~~~~~~~~~~~~~~~ 181 (182)
T cd04128 151 SINVQKIFKIVLAKAFDLPLTIPEILTVGEP 181 (182)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHCCCCCCC
T ss_conf 9798999999999996689971101778898
No 150
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.65 E-value=3.5e-16 Score=124.57 Aligned_cols=95 Identities=23% Similarity=0.212 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+..+.+++++|+|++|+||..+....+..+.+.+++.++|+++|+||+|+++++........+. ..+ ..++++||.++
T Consensus 4 r~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~~~~~-~~g-~~~i~iSa~~~ 81 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKE-SEG-IPVVYVSAKER 81 (156)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH-CCC-CCEEEEECCCC
T ss_conf 9999999879999999987889998698999999756993999977555589899999999982-899-97378701267
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 74267899999836622
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~ 189 (311)
.|++.|.+.+.+.+++.
T Consensus 82 ~g~~~L~~~i~~~~~~~ 98 (156)
T cd01859 82 LGTKILRRTIKELAKID 98 (156)
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 57999999999860235
No 151
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.65 E-value=2.6e-15 Score=118.89 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=103.3
Q ss_pred ECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3389986889999986892021058888602-1278999739--948999987984010123575321002345555321
Q gi|254780941|r 28 VGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 28 vG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
+|-++||||||+++++...-. .+..| |.- +-..-.+..+ ...+.+.||+|- +.+.......+.+++.
T Consensus 1 vGD~gVGKTsli~R~~~~~F~-~~y~p-TiGvd~~~~~~~~~~~~i~l~iWDTAGq--------E~f~sl~~~yyr~a~~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQ--------EKFGGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCC-CCCCC-CEEEEEEEEEEEECCEEEEEEEEECCCC--------CCCCCCCHHHCCCCCE
T ss_conf 989887899999999409999-99788-7148989999998998999999989887--------0001102655057878
Q ss_pred HCCCCHHHHHHHC-CHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0011000010000-0001223454--428720257872110104345788886410012334311000138742678999
Q gi|254780941|r 105 VCLVVDSHRELKV-NIHDLLKEIA--KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 105 il~VvDa~~~~~~-~~~~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
+++|.|.++..+- .....++.+. ..+.|+++|-||+|+-++....+. ..+.+..+ ...|.+|||+|.|++++..+
T Consensus 71 ~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~V~~e~-~~~a~~~~-~~y~EtSAKt~~Nv~e~F~~ 148 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHH-HHHHHHCC-CCEEEEECCCCCCHHHHHHH
T ss_conf 89996358778999899999999985799988999988757404365999-99999879-97898300469697999999
Q ss_pred HHHHCC--------CCCCCCCCCCCCCCHHHH
Q ss_conf 998366--------223568964334302567
Q gi|254780941|r 182 LCSTLP--------LAPWVYSADQISDLPMFH 205 (311)
Q Consensus 182 L~~~lp--------e~~~~y~~~~~Td~~~~~ 205 (311)
|.+.|. +.|.+-|++..-|.....
T Consensus 149 Lar~L~~~~~l~~~~~~~l~p~~~~~~~~~~~ 180 (200)
T smart00176 149 LARKLIGDPNLEFVAMPALAPPEVVMDPALAA 180 (200)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 99998389982884588889988465999999
No 152
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=1.9e-15 Score=119.75 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+.+++..+-.. ...| |. -+-..-.++.++ .++.++||+|.-+ +.......+.
T Consensus 2 KivvvG~~~vGKTSLi~r~~~~~f~~-~y~p-Tig~~~~~k~~~~~~~~~~l~iwDt~G~~~--------~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLP-TIGIDYGVKKVSVRNKEVRVNFFDLSGHPE--------YLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHH
T ss_conf 89999959956899999996399999-8589-765577799999999999999998999764--------7899999987
Q ss_pred HHHHHCCCCHHHHHHHCCH-HHHHHHHHH--------CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5321001100001000000-012234544--------28720257872110104345-7888864100123343110001
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNI-HDLLKEIAK--------RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~-~~il~~l~~--------~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk 170 (311)
++|++++|.|+++..+-.. ...+..+.+ ...|+++|-||+|+.....+ .+....+.+..+. ..|.+||+
T Consensus 72 ~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~Sak 150 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KYFETSAC 150 (168)
T ss_pred HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC-EEEEECCC
T ss_conf 47788999508974448999999999999824534566862999854034442578899999999998699-89998857
Q ss_pred CCCCHHHHHHHHHHHC
Q ss_conf 3874267899999836
Q gi|254780941|r 171 KGHGCDDVLNYLCSTL 186 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~l 186 (311)
+|+|++++.+.|.+.+
T Consensus 151 ~g~~V~e~F~~l~~~i 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7908899999999997
No 153
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=2.7e-15 Score=118.83 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=98.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9983389986889999986892021058888602--12789997399--4899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|+++|.++||||||+++++...-. ....+|- +-..-.+..++ ..+.+.||+|-- .+.......+.
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~---~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe--------~~~~l~~~y~~ 71 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE--------KFGGLRDGYYI 71 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC---CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 999999998889999999839999---9868732556799999999979999999757871--------56668788740
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 532100110000100000-0012234544--2872025787211010434578888641001233431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
++|++++|.|.++..+-. ....++.+.. .+.|+++|.||+|+..+... +....+....+ ...|.+||++|.|+++
T Consensus 72 ~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~~-~~~~~~~~~~~-~~~~EtSAk~~~nV~e 149 (166)
T cd00877 72 GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK-AKQITFHRKKN-LQYYEISAKSNYNFEK 149 (166)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-HHHHHHHHHCC-CEEEEECCCCCCCHHH
T ss_conf 065799843789888999999999999986899989999986217503667-99999999789-9899984589909899
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 89999983662235
Q gi|254780941|r 178 VLNYLCSTLPLAPW 191 (311)
Q Consensus 178 L~~~L~~~lpe~~~ 191 (311)
+...|++.+...|.
T Consensus 150 ~F~~la~~il~~~~ 163 (166)
T cd00877 150 PFLWLARKLLGNPN 163 (166)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999842899
No 154
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=4.2e-15 Score=117.60 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973--9948999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|.++||||||++++++..-. ...| +|-....-.... +...+.+.||+|--. ........+.+
T Consensus 2 Kiv~vGd~~VGKTsli~r~~~~~F~--~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~e~--------~~~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQ--------DRANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCC--------CCHHHHHHHCC
T ss_conf 8999999998999999999849788--8777-63456899999889099999998998723--------02457987368
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHH--HCCCCCEEEEEECCCHHHHHHHH---H-HHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3210011000010000000--1223454--42872025787211010434578---8-8864100123343110001387
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIA--KRSSRLILILNKIDCVKPERLLE---Q-AEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~---~-~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
+|++++|.|.++..+-... ..+..++ ..+.|+++|.||+|+.++..... . ....+........+.+||++|.
T Consensus 71 a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~EtSAktg~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98899997089877899999999999998689996899998865400250335889999999973074889990658891
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
|++++.+.+.+.+
T Consensus 151 nV~e~F~~~~k~~ 163 (166)
T cd01893 151 NVSEVFYYAQKAV 163 (166)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9899999999998
No 155
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=2.1e-15 Score=119.53 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=98.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-1278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||++++++..-.- +..| |.- +-..-.+..+ ..++.+.||+|-- .+.......+.
T Consensus 4 Kiv~vGd~~vGKTsli~r~~~~~f~~-~y~~-Tig~~~~~~~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~ 73 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTE-SYIS-TIGVDFKIRTIELDGKTIKLQIWDTAGQE--------RFRTITSSYYR 73 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHH
T ss_conf 99999999978999999994399998-7478-54404899999999999999999899982--------34626788856
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHH---HHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-00122345---4428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEI---AKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l---~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+-. ....+..+ ...+.|+++|.||+|+..+..+ .+..+.+.+..+. ..+.+||++|.||
T Consensus 74 ~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAk~g~nI 152 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSAKNATNV 152 (166)
T ss_pred HCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 326779971179989999999999999986787774488613201131466799999999998399-6999876878068
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
+++.+.|++.+..
T Consensus 153 ~e~F~~l~~~i~k 165 (166)
T cd01869 153 EQAFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999971
No 156
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=2.5e-15 Score=119.06 Aligned_cols=154 Identities=20% Similarity=0.268 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEE--C-CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 89983389986889999986892021058888602-127899973--9-9489999879840101235753210023455
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSE--K-ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~--~-~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
.|+++|-++||||||+++++...-.-..+...|+- +-..-.+.. + ..++.+.||+|- +.+.......+
T Consensus 2 KivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~--------e~~~~l~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ--------ELYSDMVSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCC--------CCHHHHHHHHH
T ss_conf 9999995995889999999978886688888864578899999978997999999979998--------40067899997
Q ss_pred HHHHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 553210011000010000-00012234544--28720257872110104345-788886410012334311000138742
Q gi|254780941|r 100 KHADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
.+||++++|.|.++..+- .....++.++. .+.|+++|.||+|+.++..+ .+..+.+....+. ..|.+||++|.|+
T Consensus 74 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~g~nV 152 (164)
T cd04101 74 ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRGVGY 152 (164)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 642689999707746689999999999997668986899987224452455699999999998899-8999866889098
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+++.+.|.+..
T Consensus 153 ~e~F~~lar~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 157
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=99.64 E-value=4.4e-15 Score=117.44 Aligned_cols=155 Identities=19% Similarity=0.135 Sum_probs=102.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC------------------------EEEECC------CCCCEEEEEEEEEEECCEEE
Q ss_conf 189983389986889999986892------------------------021058------88860212789997399489
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK------------------------VSIVTH------KVQTTRSIVRGIVSEKESQI 72 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~------------------------vsivS~------k~~TTr~~i~gi~~~~~~qi 72 (311)
..|+++|.-.+|||||+-+|+-.- .|-+-+ .-+-|-+.-..-+..++..+
T Consensus 8 l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~~~~ 87 (443)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYY 87 (443)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCCEEE
T ss_conf 59999947798288889999987388468899999888887178720004453077667636710734799994398899
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC-------CHHHHHHHHHHCCCC-CEEEEEECCCHH
Q ss_conf 999879840101235753210023455553210011000010000-------000122345442872-025787211010
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-------NIHDLLKEIAKRSSR-LILILNKIDCVK 144 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~-------~~~~il~~l~~~~~p-~IiVlNKiDlv~ 144 (311)
+|+|+|| |+.+.+.....+..+|++++||||+++..+ +..+.+..+...+.+ +|+++||+|+++
T Consensus 88 ~iiD~PG--------H~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~ 159 (443)
T PTZ00141 88 TVIDAPG--------HRDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCD 159 (443)
T ss_pred EEEECCC--------HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf 9998997--------28889999963410775899998677852134666786399999999739975999999621566
Q ss_pred --HHHHHHH---HHHHHHCCCC----CCCCCCCCCCCCCHH------------HHHHHHHHH
Q ss_conf --4345788---8864100123----343110001387426------------789999983
Q gi|254780941|r 145 --PERLLEQ---AEIANKLVFI----EKTFMVSATKGHGCD------------DVLNYLCST 185 (311)
Q Consensus 145 --~~~l~~~---~~~~~~~~~~----~~i~~ISAk~g~Gid------------~L~~~L~~~ 185 (311)
++...+. ...+.+..++ -.++|+||..|+|+- .|++.|-..
T Consensus 160 ~~e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLle~Ld~~ 221 (443)
T PTZ00141 160 YKEDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIEKSDKMPWYKGKTLVEALDTM 221 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHCC
T ss_conf 60999999999999999973999566618963412466532466556442356899998568
No 158
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=5.2e-15 Score=116.96 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=95.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||++++++..-. .....|-.+...-.+..++ ..+.+.||+|--. .+.+. ...+.++
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~--~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~-----~~~l~---~~~~~~a 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQED-----YDRLR---PLSYPDT 70 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----CCCCC---HHHCCCC
T ss_conf 599897897599999999539899--9857850578999999999999999994898703-----45450---0110488
Q ss_pred HHHCCCCHHHHHHHCCHH-H-HHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCCCC
Q ss_conf 210011000010000000-1-2234544--28720257872110104345-------------78888641001233431
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIH-D-LLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEKTF 165 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~-~-il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~i~ 165 (311)
|++++|.|.++..+-... . .+..+.. .+.|+++|.||+|+...... .+..+.+.+..+....|
T Consensus 71 ~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~~~~y~ 150 (174)
T smart00174 71 DVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYL 150 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 68999975898789999999899999986889869999875425012333545533146500299999999983997899
Q ss_pred CCCCCCCCCHHHHHHHHHHHC
Q ss_conf 100013874267899999836
Q gi|254780941|r 166 MVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 166 ~ISAk~g~Gid~L~~~L~~~l 186 (311)
.+||++|.|++++.+.+++.+
T Consensus 151 EtSAk~g~nV~e~F~~l~r~~ 171 (174)
T smart00174 151 ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 964588949899999999997
No 159
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=2.9e-15 Score=118.63 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=101.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-21278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|+++|-++||||||+.+++...-. ++...|+ -+-..-.+..+ ..++-+.||+|- +.+.......+.
T Consensus 8 KivllGd~~VGKTsl~~r~~~~~f~--~~y~~Tig~~~~~k~~~~~~~~v~l~iwDtaGq--------e~f~~l~~~y~r 77 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ--------GRFCTIFRSYSR 77 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCEEEEEEEEEECCEEEEEEEECCCCC--------CCHHHHHHHHHH
T ss_conf 9999998997899999999749978--986876537989999999999999999817886--------221167898866
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 53210011000010000-00012234544--28720257872110104345-7888864100123343110001387426
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
+||.+++|.|.++..+- .....++.+.. .+.|+++|.||+|+..+.++ .+....+....+ ...|.+||++|.|++
T Consensus 78 ~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r~V~~ee~~~~A~~~~-~~f~EtSAk~g~nV~ 156 (189)
T cd04121 78 GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCNFNIT 156 (189)
T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCHH
T ss_conf 3370489822798899999999999999976898789961325503308899999999999889-999996006793989
Q ss_pred HHHHHHHHHCCC
Q ss_conf 789999983662
Q gi|254780941|r 177 DVLNYLCSTLPL 188 (311)
Q Consensus 177 ~L~~~L~~~lpe 188 (311)
++.+.|.+.+..
T Consensus 157 e~F~~l~~~il~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 160
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=99.64 E-value=3.3e-15 Score=118.24 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=100.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC------------------------EEEECC------CCCCEEEEEEEEEEECCEE
Q ss_conf 2189983389986889999986892------------------------021058------8886021278999739948
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAK------------------------VSIVTH------KVQTTRSIVRGIVSEKESQ 71 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~------------------------vsivS~------k~~TTr~~i~gi~~~~~~q 71 (311)
-..|+++|.-.+|||||+-+|+-.- .|...+ .-+-|-+.-..-+..++..
T Consensus 7 ~lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~~~ 86 (449)
T PTZ00336 7 HMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSV 86 (449)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEE
T ss_conf 43999992778968888999998748847899999999998718751432545127722322875898679999749848
Q ss_pred EEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC-------CHHHHHHHHHHCCCC-CEEEEEECC--
Q ss_conf 9999879840101235753210023455553210011000010000-------000122345442872-025787211--
Q gi|254780941|r 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-------NIHDLLKEIAKRSSR-LILILNKID-- 141 (311)
Q Consensus 72 iifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~-------~~~~il~~l~~~~~p-~IiVlNKiD-- 141 (311)
+.|+|+|| |+.+.+.....+..+|++++||||+++..+ +..+.+..+...+.+ +|+++||+|
T Consensus 87 ~~iiD~PG--------H~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~ 158 (449)
T PTZ00336 87 FTIIDAPG--------HRDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDK 158 (449)
T ss_pred EEEEECCC--------HHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 99986894--------6888999997650067679999878774103556677539999999866997799998620156
Q ss_pred CHH--HHHHHHHHH---HHHHCCCC----CCCCCCCCCCCCCHHH------------HHHHHHHH
Q ss_conf 010--434578888---64100123----3431100013874267------------89999983
Q gi|254780941|r 142 CVK--PERLLEQAE---IANKLVFI----EKTFMVSATKGHGCDD------------VLNYLCST 185 (311)
Q Consensus 142 lv~--~~~l~~~~~---~~~~~~~~----~~i~~ISAk~g~Gid~------------L~~~L~~~ 185 (311)
.+. ++...+..+ .+.+..++ -.++|+||++|+|+-+ |++.|-..
T Consensus 159 ~v~~~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~~s~~~~Wy~GptLl~~Ld~~ 223 (449)
T PTZ00336 159 TVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDML 223 (449)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHCC
T ss_conf 62113789999999999999874999000543542010477753265557541052489997544
No 161
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=1.9e-15 Score=119.74 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||++++++.+-.. ...| |.- +-..-.+..++ .++-+.||||-- .+.......+.
T Consensus 5 Kiv~iGd~~VGKTsli~r~~~~~f~~-~~~~-Tig~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~ 74 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNL-DSKS-TIGVEFATRSIQIDGKTIKAQIWDTAGQE--------RYRAITSAYYR 74 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHH
T ss_conf 99999999978999999997298999-8898-74478789999999999999999899972--------12678998733
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-0012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+-. ....++.++. .+.|+++|.||+|+.....+ .+..+.+.+..+. ..|.+||++|.|+
T Consensus 75 ~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~-~~~E~SAk~g~nV 153 (165)
T cd01868 75 GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETSALDGTNV 153 (165)
T ss_pred HCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 205148986269889999999999999985557735987023478688578889999999998599-7999678889298
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+++.+.|++.+
T Consensus 154 ~e~F~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 162
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.64 E-value=6.9e-16 Score=122.64 Aligned_cols=56 Identities=34% Similarity=0.418 Sum_probs=47.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 21899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
...|+|+|+||||||||+|+|+|++.++||+.|||||+.+.--. +..+.|+||||+
T Consensus 100 ~~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~~~i~~---~~~~~liDTpGi 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEE---CCCEEEEECCCC
T ss_conf 60899987777447789999847850626699983835599996---899899979299
No 163
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.64 E-value=5e-15 Score=117.11 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=99.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEE-EEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860212-789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI-VRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~-i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-|.++|.++||||||+++++...-. .++...|.-.. ..-.+..++ ..+.+.||+|-- .+.......+.
T Consensus 2 KivlvGd~~VGKTsLi~r~~~~~f~-~~~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e--------~~~~l~~~y~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE--------RYEAMSRIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 8999996998799999999859799-89978763058899999999999999999199973--------12355798834
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHH--HCCCCCEEEEEECCCHHHH----H-HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-0001223454--4287202578721101043----4-5788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIA--KRSSRLILILNKIDCVKPE----R-LLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~--~~~~p~IiVlNKiDlv~~~----~-l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+||++++|.|.++..+- .....+..+. ..+.|+++|.||+|+..++ . -.+....+.+..+ ...|.+||++|
T Consensus 73 ~a~~~ilvydit~~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~-~~~~E~SAktg 151 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTG 151 (193)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 77445788306987999989999999997489999799977466322016664468999999999809-96999838989
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
.||+++.+.|++.+-.
T Consensus 152 ~nV~e~F~~la~~i~~ 167 (193)
T cd04118 152 QNVDELFQKVAEDFVS 167 (193)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 3989999999999997
No 164
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.64 E-value=5.8e-16 Score=123.12 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+..++.++.+|+|++|+||..++...+..+.+.++ ++|.++|+||+|+++++...+....+... ...++++||+++
T Consensus 11 ~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~~~~~~~~~~~~--~~~~~~~sa~~~ 86 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVNAKSG 86 (171)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCC
T ss_conf 99999998699999999898888765289999976--89889998555558978999999999807--996799842266
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
.|+++|.+.+.+..+.
T Consensus 87 ~g~~~l~~~i~~~~~~ 102 (171)
T cd01856 87 KGVKKLLKAAKKLLKD 102 (171)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 5789999999997354
No 165
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.63 E-value=6.4e-15 Score=116.40 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=94.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|.++||||||++++++.+-. .....|.-+...-.+..++ ..+.++||+|--. +.......+.+
T Consensus 2 Ki~llGd~~VGKTsli~r~~~~~f~--~~y~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~--------~~~~~~~~~~~ 71 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE--------YDRLRPLSYPN 71 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCC--------CCCCHHHHHHH
T ss_conf 8999999996699999999629999--8758803466689999999999999998998710--------24132234442
Q ss_pred HHHHCCCCHHHHHHHCCH-HH-HHHHHHH--CCCCCEEEEEECCCHHHHH-----------H-HHHHHHHHHCCCCCCCC
Q ss_conf 321001100001000000-01-2234544--2872025787211010434-----------5-78888641001233431
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNI-HD-LLKEIAK--RSSRLILILNKIDCVKPER-----------L-LEQAEIANKLVFIEKTF 165 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~-~~-il~~l~~--~~~p~IiVlNKiDlv~~~~-----------l-~~~~~~~~~~~~~~~i~ 165 (311)
+|++++|.|.++..+-.. .. .+..+.. .+.|+++|.||+|+.+... + .+..+.+.+..+....+
T Consensus 72 a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~~~~~f~ 151 (171)
T cd00157 72 TDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 65899999689778899999999999998599986899998710012300022331147515899999999984998899
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 1000138742678999998
Q gi|254780941|r 166 MVSATKGHGCDDVLNYLCS 184 (311)
Q Consensus 166 ~ISAk~g~Gid~L~~~L~~ 184 (311)
.+||++|.|++++.+.|++
T Consensus 152 E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 152 ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EECCCCCCCHHHHHHHHHC
T ss_conf 9787899598999999966
No 166
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=1.5e-15 Score=120.49 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=98.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-1278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||||+++++...-.. ..+.|.- +-..-.+..+ ..++-+.||+|-- .+.......+.
T Consensus 4 KivlvGd~~VGKTsli~r~~~~~f~~--~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~ 73 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE--------RFRAVTRSYYR 73 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCCHHHEE
T ss_conf 99999999957999999991298899--999974468899999999999999999899985--------44425211143
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+-. ....+..+. ..+.|+++|.||+|+.++..+ .+..+.+.+..+. ..+.+||++|.|+
T Consensus 74 ~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~g~nV 152 (166)
T cd04122 74 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSAKTGENV 152 (166)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 154659972587476799999999999985699975870340157444389999999999998699-8999865878088
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
+++...|++.+-+
T Consensus 153 ~e~F~~l~~~i~~ 165 (166)
T cd04122 153 EDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999974
No 167
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=3.2e-15 Score=118.37 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-|+++|.++||||||+++++...-.. ...|-...+-..-.+..++ ..+.+.||+|-- .+.......+.+
T Consensus 8 KIvlvGd~~VGKTSli~r~~~~~F~~-~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe--------~~~~l~~~~~~~ 78 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE--------RFRTITSTYYRG 78 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHHC
T ss_conf 99999979988899999995099999-868975558789999999999999999899981--------235352666424
Q ss_pred HHHHCCCCHHHHHHHC-CHHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 3210011000010000-00012234544--28720257872110104345-78888641001233431100013874267
Q gi|254780941|r 102 ADIVCLVVDSHRELKV-NIHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 102 aDiil~VvDa~~~~~~-~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
||++++|.|.++..+- .....+..+.. ...|+|+|.||+|+.....+ .+..+.+.+..+ ...|.+||++|.||++
T Consensus 79 a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~-~~f~E~SAktg~nV~e 157 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENINVEE 157 (199)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCC-CEEEEEECCCCCCHHH
T ss_conf 654238971798899999999999999759987579998855447546999999999999869-9799986899929899
Q ss_pred HHHHHHHHCCC
Q ss_conf 89999983662
Q gi|254780941|r 178 VLNYLCSTLPL 188 (311)
Q Consensus 178 L~~~L~~~lpe 188 (311)
+.+.|++.+-.
T Consensus 158 ~F~~i~~~i~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 168
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.63 E-value=2.8e-15 Score=118.72 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-1278999739--94899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|-++||||||++++++..... ...| |.- +-..-.+..+ ..++.+.||+|-- .+.......+.
T Consensus 3 KivllGd~~VGKTsli~r~~~~~f~~-~y~~-Tig~~~~~k~i~~~~~~i~l~iwDtaGqe--------~~~~l~~~y~~ 72 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTS-AFVS-TVGIDFKVKTVFRNDKRVKLQIWDTAGQE--------RYRTITTAYYR 72 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHH
T ss_conf 99999999968899999992498899-7688-76378799999999999999999699983--------45544154411
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-00012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++|++++|.|.++..+- .....++.+.. .+.|+++|.||+|+.++..+ .+..+.+.+..+. +.|.+||++|.|+
T Consensus 73 ~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~~~~~a~~~~~-~~~E~SAk~~~nV 151 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKENINV 151 (165)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 354489985178879999999999999986898725999602423555188999999999998699-7999768989088
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+++.+.|++.+
T Consensus 152 ~e~F~~l~~~i 162 (165)
T cd01865 152 KQVFERLVDII 162 (165)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 169
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=4.9e-15 Score=117.17 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=96.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-. .....|.-+.....+..++ ..+.++||+|- +.+.......+..+
T Consensus 2 IvvlGd~~VGKTSLi~rf~~~~F~--~~y~~Ti~~~~~k~~~v~~~~v~l~i~DtaG~--------e~~~~l~~~~~r~a 71 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--------YSFPAMRKLSIQNS 71 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCHHHEEEEEEEECCEEEEEEEEECCCC--------CCCHHHHHHHCCCC
T ss_conf 899998997799999999859899--88888725418899998997999999978775--------13014555541588
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHH-H-HHHHHHHHH-CCCCCCCCCCCCCCCCC
Q ss_conf 2100110000100000-001223454----42872025787211010434-5-788886410-01233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPER-L-LEQAEIANK-LVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~-l-~~~~~~~~~-~~~~~~i~~ISAk~g~G 174 (311)
|++++|.|.++..+-. ...+++.+. ....|+++|.||+|++..++ + .+..+.+.. ..+ ...|.+||++|.|
T Consensus 72 ~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~~e~~~~a~~~~~-~~f~EtSAktg~n 150 (198)
T cd04147 72 DAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN-CGFVETSAKDNEN 150 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCC
T ss_conf 668999616977999999999999999628889828999878765010478489999999985599-7899877999949
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
|+++.+.|+..+-
T Consensus 151 V~e~F~~l~r~i~ 163 (198)
T cd04147 151 VLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999999977
No 170
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.63 E-value=3.2e-15 Score=118.35 Aligned_cols=151 Identities=18% Similarity=0.283 Sum_probs=98.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 998338998688999998689202105888860-212789997399--48999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
|+++|.++||||||++++++..-.- ....|. .+-..-.++.++ ..+.++||+|- +.+.......+.+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~--~~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~--------e~~~~~~~~~~~~ 72 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--------ERFRSLIPSYIRD 72 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCC--------HHHHHHHHHHHHH
T ss_conf 9999979978999999993199999--84897567889999999999999999979985--------3157888988665
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 32100110000100000-0012234544---28720257872110104345-7888864100123343110001387426
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
+|++++|.|.++..+-. ....+..+.. ...|+++|.||+|+..+..+ ......+....+. ..+.+||++|.|++
T Consensus 73 ~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~~~e~~~~a~~~~~-~y~E~Sak~~~nV~ 151 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSAKAGHNVK 151 (161)
T ss_pred HCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 25899998479989999999999999986578984999610211022177899999999998499-89998347780889
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++.+.|++.|
T Consensus 152 e~F~~la~~l 161 (161)
T cd01861 152 ELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHC
T ss_conf 9999999709
No 171
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.63 E-value=4.2e-15 Score=117.61 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=99.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE--EEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 899833899868899999868920210588886021--278999739--9489999879840101235753210023455
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~--~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
-|+++|.++||||||++++++.+-.. ....|-. -..-.++.+ ..++.+.||+|-- .+.......+
T Consensus 6 KivlvGd~~VGKTsli~r~~~~~f~~---~~~~Tig~~~~~k~i~~~~~~~~l~iwDt~G~e--------~~~~l~~~~~ 74 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE--------SFRSITRSYY 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHH
T ss_conf 99999989978899999991098999---878985078899999999999999999799973--------3462558886
Q ss_pred HHHHHHCCCCHHHHHHHCC-HHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5532100110000100000-0012234544---28720257872110104345-78888641001233431100013874
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN-IHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~-~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
.++|++++|.|.++..+-+ ....+..+.. .+.|+++|.||+|+..+..+ .+..+.+.+..+. ..+.+||++|.|
T Consensus 75 ~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~n 153 (168)
T cd01866 75 RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSAKTASN 153 (168)
T ss_pred HHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 6436899934458779999999999999986799965998434235454077899999999998699-999976788808
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 26789999983662
Q gi|254780941|r 175 CDDVLNYLCSTLPL 188 (311)
Q Consensus 175 id~L~~~L~~~lpe 188 (311)
++++...|++.+.+
T Consensus 154 V~~~F~~l~~~i~~ 167 (168)
T cd01866 154 VEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999973
No 172
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.62 E-value=6.8e-15 Score=116.22 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=96.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE----EEEEEEEE----------CCEEEEEEECCCCHHHCCCCCC
Q ss_conf 899833899868899999868920210588886021----27899973----------9948999987984010123575
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS----IVRGIVSE----------KESQIVFLDTPGIFNAKDSYHK 89 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~----~i~gi~~~----------~~~qiifvDTPG~~~~~~~l~~ 89 (311)
.|+++|-++||||||++++++..-.. ...+|-. ...-++.. ...++-+.||+|--
T Consensus 6 KivvvGd~~VGKTsli~r~~~~~f~~---~y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe-------- 74 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFNP---KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------- 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCH--------
T ss_conf 99999999988899999996195899---8688432268899999847655444578858999999898863--------
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHH-CCHHHHHHHHHH----CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCC
Q ss_conf 321002345555321001100001000-000012234544----28720257872110104345-788886410012334
Q gi|254780941|r 90 LMIRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAK----RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEK 163 (311)
Q Consensus 90 ~~~~~~~~~l~~aDiil~VvDa~~~~~-~~~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~ 163 (311)
.+.......+.+||++++|.|.++..+ ......++.+.. .+.|+++|.||+|+.++..+ .+..+.+.+..+. .
T Consensus 75 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~-~ 153 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGI-P 153 (180)
T ss_pred HHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCC-E
T ss_conf 047888999875436589996898899998999999999854668985787503236675088899999999998499-7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 31100013874267899999836
Q gi|254780941|r 164 TFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 164 i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
.|.+||++|.|++++.+.|.+.+
T Consensus 154 ~~E~SAk~g~nV~e~F~~l~~~i 176 (180)
T cd04127 154 YFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99980377919899999999999
No 173
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.62 E-value=1e-15 Score=121.62 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=48.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 2189983389986889999986892021058888602127899973994899998798401
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
...|+++|+||||||||+|+|.|++.++||+.|||||.... +. . +.++.++||||+.-
T Consensus 83 ~~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~~-i~-~-~~~i~liDTPGi~~ 140 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT-IF-L-TPTITLCDCPGLVF 140 (141)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEE-EE-E-CCCEEEEECCCCCC
T ss_conf 62689977888669999999858866876599941576689-99-6-89999998988689
No 174
>PRK13351 elongation factor G; Reviewed
Probab=99.62 E-value=1.1e-14 Score=114.85 Aligned_cols=112 Identities=19% Similarity=0.250 Sum_probs=86.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE-----EECCC------------CCCEEEEEEEEEEECCEEEEEEECCCCHHHCCC
Q ss_conf 8998338998688999998689202-----10588------------886021278999739948999987984010123
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVS-----IVTHK------------VQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vs-----ivS~k------------~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~ 86 (311)
+|+|+|...+||+||.-+|+-..=. -|... -+.|-......+..+++.+.|+||||..+
T Consensus 10 Ni~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPGHvD---- 85 (687)
T PRK13351 10 NIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPGHID---- 85 (687)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCC----
T ss_conf 8999917998989999999997499875871547874478829999749877621599988998999980979743----
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
+...+..++.-+|.+++|||+.++...+...+++++.+.+.|.++++||+|..
T Consensus 86 ----F~~Ev~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~ 138 (687)
T PRK13351 86 ----FTGEVERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRV 138 (687)
T ss_pred ----HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf ----09999999998786899997899986889999999998799859999797789
No 175
>KOG0410 consensus
Probab=99.62 E-value=4.8e-16 Score=123.70 Aligned_cols=154 Identities=22% Similarity=0.254 Sum_probs=98.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCC--CEEEEEEEEEEECCE-EEEEEECCCCHHHCCCCCCCCCC-
Q ss_conf 68512189983389986889999986892021058888--602127899973994-89999879840101235753210-
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--TTRSIVRGIVSEKES-QIVFLDTPGIFNAKDSYHKLMIR- 93 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~--TTr~~i~gi~~~~~~-qiifvDTPG~~~~~~~l~~~~~~- 93 (311)
++.-++.|++||.+|+|||||+|+|++.. +.++-| .|-++..-..+.++. -+.|.||-||++. +.-.++.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aa---l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd---LP~~LvaA 247 (410)
T KOG0410 174 EGESSPVIAVVGYTNAGKSTLIKALTKAA---LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD---LPIQLVAA 247 (410)
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHH---CCCCCHHHEECCCHHHHCCCCCCCEEEEEECHHHHHH---CCHHHHHH
T ss_conf 35778628999634766889999987500---5830001101253134300799867999603466654---74999999
Q ss_pred --HHHHHHHHHHHHCCCCHHHHHHHC-CHHHHHHHHHHCCCC-------CEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf --023455553210011000010000-000122345442872-------0257872110104345788886410012334
Q gi|254780941|r 94 --LSWSTIKHADIVCLVVDSHRELKV-NIHDLLKEIAKRSSR-------LILILNKIDCVKPERLLEQAEIANKLVFIEK 163 (311)
Q Consensus 94 --~~~~~l~~aDiil~VvDa~~~~~~-~~~~il~~l~~~~~p-------~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~ 163 (311)
.+...+.++|++++|+|++.+.-+ +....+.-++..+.| ++=|-||+|..+.+. -.+ . .-
T Consensus 248 F~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------e~E--~-n~ 317 (410)
T KOG0410 248 FQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------EEE--K-NL 317 (410)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC-------CCC--C-CC
T ss_conf 9999998752344899861579668888989999997469984777767874212356655667-------535--5-78
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 311000138742678999998366
Q gi|254780941|r 164 TFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 164 i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
.++|||++|+|+++|++.+-+.+.
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410 318 DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 514301567547999998888765
No 176
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.62 E-value=4.8e-15 Score=117.21 Aligned_cols=157 Identities=20% Similarity=0.291 Sum_probs=103.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--EEEEC-CCCCCEE---------------EE--EEEEEE---ECCEEEEEEECCCC
Q ss_conf 89983389986889999986892--02105-8888602---------------12--789997---39948999987984
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK--VSIVT-HKVQTTR---------------SI--VRGIVS---EKESQIVFLDTPGI 80 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~--vsivS-~k~~TTr---------------~~--i~gi~~---~~~~qiifvDTPG~ 80 (311)
+||++|....|||||+.+|+... .+.-+ ...+.+| .. +.-.+. ...+.+.|+||||.
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH------HHHH----HHH
Q ss_conf 010123575321002345555321001100001000000012234544287202578721101------0434----578
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV------KPER----LLE 150 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv------~~~~----l~~ 150 (311)
. .+...+..++.-+|.+++||||.++...+....+++..+.+.|.++++||+|++ .+++ +..
T Consensus 82 ~--------dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ 153 (213)
T cd04167 82 V--------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRH 153 (213)
T ss_pred H--------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHH
T ss_conf 4--------17999998886377679999878887577999999999869998999988234314406998999998999
Q ss_pred HHHHHH----HCC---------CCCCCCCCCCCCCCC--------HHHHHHHHHHHCCC
Q ss_conf 888641----001---------233431100013874--------26789999983662
Q gi|254780941|r 151 QAEIAN----KLV---------FIEKTFMVSATKGHG--------CDDVLNYLCSTLPL 188 (311)
Q Consensus 151 ~~~~~~----~~~---------~~~~i~~ISAk~g~G--------id~L~~~L~~~lpe 188 (311)
.++..+ ... ....+.+.||+.|.+ +-.|.+.|.++.|.
T Consensus 154 ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~ip~ 212 (213)
T cd04167 154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999997078735165688796999970005212362321168999999963889
No 177
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62 E-value=1.5e-14 Score=114.07 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-|+++|.++||||||+.+++...-. .....|.-+...-.+..++ ..+-+.||+|-- .+.......+.+
T Consensus 3 Ki~liGd~~VGKTsli~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e--------~~~~~~~~~~~~ 72 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQE--------DYDRLRPLSYPD 72 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHCC
T ss_conf 9999998996699999999709899--984784368999999999999999999777661--------323240443148
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--28720257872110104345-------------7888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~i 164 (311)
+|++++|.|.++..+-... ..+..+.. .+.|+++|.||+|+.+.... .+....+.+..+....
T Consensus 73 a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~f 152 (175)
T cd01870 73 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899998659879999999999999997298998999987243343323456665402556689999999997499789
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 1100013874267899999836
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~l 186 (311)
|.+||++|.||+++.+.+.+.+
T Consensus 153 ~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 153 MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9976899979899999999986
No 178
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=9.8e-15 Score=115.20 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=95.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-. .....|.-+...-.+..++ .++-+.||+|--. .+ ......+.+|
T Consensus 4 ivllGd~~VGKTsli~r~~~~~F~--~~y~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~-----~~---~l~~~~~~~a 73 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ-----FP---AMQRLSISKG 73 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCC-----CC---CCHHHHHCCC
T ss_conf 999899997699999999649699--9868845420558999999999999998999846-----54---2324450688
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHHH------CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2100110000100000-0012234544------28720257872110104345-78888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIAK------RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~~------~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
|++++|.|.++..+-. ...+++.+.. .+.|+++|.||+|+.....+ .+..+.+....+. ..|.+||++|.|
T Consensus 74 ~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~n 152 (165)
T cd04140 74 HAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETSAKTNHN 152 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 5799981389878999999999999999615888887899864246400278899999999998698-899974477948
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
|+++.+.|.+..
T Consensus 153 V~e~F~~l~~l~ 164 (165)
T cd04140 153 VQELFQELLNLE 164 (165)
T ss_pred HHHHHHHHHHCC
T ss_conf 799999998140
No 179
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=1.4e-14 Score=114.25 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=83.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCC------CEEE----------EEE--E-EEE-ECCEEEEEEECCCCHHH
Q ss_conf 89983389986889999986892021058888------6021----------278--9-997-39948999987984010
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------TTRS----------IVR--G-IVS-EKESQIVFLDTPGIFNA 83 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~------TTr~----------~i~--g-i~~-~~~~qiifvDTPG~~~~ 83 (311)
+|+|+|.-.+||+||.-+|+-.. -++++++ |+.| .|. . ... .++++|.|+||||..+
T Consensus 12 Ni~IiaHvd~GKTTL~e~lL~~s--g~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTPGHvD- 88 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYT--GVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTPGHVD- 88 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECCCCCC-
T ss_conf 99999169999899999999966--984658424389855678288997698873222548826973899991979752-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 123575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 84 ~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
+...+..++.-+|.+++||||..+...+...+++++.+.+.|.++++||+|..
T Consensus 89 -------F~~Ev~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~ 141 (693)
T PRK00007 89 -------FTIEVERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRT 141 (693)
T ss_pred -------HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf -------48999999998586899998898877779999999987598969999797789
No 180
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.61 E-value=1.9e-15 Score=119.74 Aligned_cols=87 Identities=26% Similarity=0.308 Sum_probs=71.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE-----------------EEEEEECCCCHHHCCCC
Q ss_conf 9983389986889999986892021058888602127899973994-----------------89999879840101235
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-----------------QIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~-----------------qiifvDTPG~~~~~~~l 87 (311)
|+|||.||||||||+|+|++.++ .+.+.|.+|-++..|++..+|. ++-|+|.||+.+....
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~-~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC-
T ss_conf 95647899988999999977998-7458997772680589967756588998731776512357899854655677523-
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 75321002345555321001100001
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHR 113 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~ 113 (311)
++.+-...++.+.++|++++||.+-+
T Consensus 79 GeGLGN~FL~~Ir~vDai~hVVR~F~ 104 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCCCCHHHHHHHHHCCEEEEEHHHCC
T ss_conf 67650899999873463465321115
No 181
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.61 E-value=1.4e-14 Score=114.18 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=103.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCC----------EEEECCCC----------------------CCEEEEEEEEE
Q ss_conf 68512189983389986889999986892----------02105888----------------------86021278999
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVGAK----------VSIVTHKV----------------------QTTRSIVRGIV 65 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g~~----------vsivS~k~----------------------~TTr~~i~gi~ 65 (311)
++..-..++++|.--+|||||+-+|+-.- +-.-|.+. +-|-+.-..-+
T Consensus 23 ~~k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f 102 (475)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (475)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEE
T ss_conf 47985799999055797788889999981997889999999999982887772224442059988986697169567899
Q ss_pred EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHH
Q ss_conf 7399489999879840101235753210023455553210011000010000000122345442872-025787211010
Q gi|254780941|r 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVK 144 (311)
Q Consensus 66 ~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~ 144 (311)
..++..++++|+|| |+.+.+........||+.++||||+++..++..+.+..+.-.+.+ +|+++||+|+++
T Consensus 103 ~t~~r~~~i~DaPG--------H~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~ 174 (475)
T PRK05124 103 STEKRKFIIADTPG--------HEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (475)
T ss_pred ECCCEEEEEEECCC--------HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCC
T ss_conf 53876899973796--------3877888988887678899999898894788899999998659985999985043135
Q ss_pred --HHHHH---HHHHHHHHCCCCC---CCCCCCCCCCCCHHH
Q ss_conf --43457---8888641001233---431100013874267
Q gi|254780941|r 145 --PERLL---EQAEIANKLVFIE---KTFMVSATKGHGCDD 177 (311)
Q Consensus 145 --~~~l~---~~~~~~~~~~~~~---~i~~ISAk~g~Gid~ 177 (311)
++... .....+.+..++. .++||||++|+|+-+
T Consensus 175 ~~~~~f~~I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv~ 215 (475)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (475)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 43999999999999999974998885077541345767621
No 182
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.61 E-value=1.2e-14 Score=114.67 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-. .....|.-+...-.+..++ ..+.+.||+|--+ +.......+.+|
T Consensus 4 IvllGd~~VGKTsli~r~~~~~f~--~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~--------~~~l~~~y~~~a 73 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLYMKNG 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEECCCCCCHH--------HHHHHHHHHCCC
T ss_conf 999899997599999999709288--6568840468999999999999998514775432--------456788873578
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|.+++|.|.++..+-. ...+...+. ..+.|+++|.||+|+.+...+ .+..+.+....+. ..+.+||++|.|++
T Consensus 74 ~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~~a~~~~~-~~~E~SAk~~~nV~ 152 (164)
T cd04175 74 QGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAKAKINVN 152 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 68999960787778999999999999862899963998521457222068999999999998599-99996689881789
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++...|++.+
T Consensus 153 ~~F~~l~~~i 162 (164)
T cd04175 153 EIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 183
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=1.1e-14 Score=114.89 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=97.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-.- ...| |.-+-..-.+..++ ..+.+.||+|-- .+.......+.+|
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~-~y~p-Ti~~~~~k~i~~~~~~~~l~iwDtaG~e--------~~~~~~~~~~~~a 73 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFIE-KYDP-TIEDFYRKEIEVDSSPSVLEILDTAGTE--------QFASMRDLYIKNG 73 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCCEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHCCC
T ss_conf 9998999978999999997098997-5588-5233167999988899999999898854--------2567889985578
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 2100110000100000-001223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|++++|.|.++..+-. ...+.+.+. ..+.|+++|.||+|+..+..+ .+..+.+....+. ..+.+||++|.||+
T Consensus 74 ~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~nV~ 152 (163)
T cd04176 74 QGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVN 152 (163)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 65689712798899999999999999973899963999743134001276999999999998599-89998568781779
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++...|++.+
T Consensus 153 ~~F~~l~~~i 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHH
T ss_conf 9999999953
No 184
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.60 E-value=1.4e-14 Score=114.18 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEE--EEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 8998338998688999998689202105888860-2127--8999739--948999987984010123575321002345
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIV--RGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i--~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
.|+++|-++||||||+.++++..-. .....|. .+-. .-.+... ..++.+.||+|- +.+.......
T Consensus 2 KivvlGd~~VGKTsLi~r~~~~~f~--~~y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~--------e~~~~l~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ--------EEFDAITKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCC--------CCCCCCHHHH
T ss_conf 8999999998899999999849689--87688556257887899867997999999978997--------0134152456
Q ss_pred HHHHHHHCCCCHHHHHHHCC-HHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 55532100110000100000-0012234544--28720257872110104345-78888641001233431100013874
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVN-IHDLLKEIAK--RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~-~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
+.++|++++|.|.++..+-. .....+.+.. .+.|+++|.||+|+..+..+ .+..+.+.+..+ ...|.+||++|.|
T Consensus 72 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~-~~~~E~SAk~~~n 150 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDDFN 150 (162)
T ss_pred HHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHCC-CEEEEECCCCCCC
T ss_conf 123031268840698899999999999999766996299984054441017789999999999869-8799986888829
Q ss_pred HHHHHHHHHHH
Q ss_conf 26789999983
Q gi|254780941|r 175 CDDVLNYLCST 185 (311)
Q Consensus 175 id~L~~~L~~~ 185 (311)
++++.+.|++.
T Consensus 151 V~e~F~~la~k 161 (162)
T cd04106 151 VTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999960
No 185
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=4e-15 Score=117.72 Aligned_cols=160 Identities=24% Similarity=0.312 Sum_probs=113.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCC---------------CCCEEEE--EEEEEEE---CCEEEEEEE
Q ss_conf 3685121899833899868899999868920210588---------------8860212--7899973---994899998
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHK---------------VQTTRSI--VRGIVSE---KESQIVFLD 76 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k---------------~~TTr~~--i~gi~~~---~~~qiifvD 76 (311)
+++.| +-+|+-.-..|||||-.+|+...-.+ +.+ -+-|-.. +.-.+.. .++++.|+|
T Consensus 6 ~~~IR--NFsIIAHIDHGKSTLaDRlle~t~~~-~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 6 QKNIR--NFSIIAHIDHGKSTLADRLLELTGGL-SEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred HHHCC--CEEEEEEECCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECC
T ss_conf 54423--22799984278204889999984676-7678888752213467662845873278999994799779999727
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH--HHHHHHHHHHH
Q ss_conf 7984010123575321002345555321001100001000000012234544287202578721101--04345788886
Q gi|254780941|r 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV--KPERLLEQAEI 154 (311)
Q Consensus 77 TPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv--~~~~l~~~~~~ 154 (311)
|||..+-.+ .+.+++..|...++||||+++...+...-+.....++..++-|+||+|+- +++++..+++.
T Consensus 83 TPGHVDFsY--------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~ 154 (603)
T COG0481 83 TPGHVDFSY--------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIED 154 (603)
T ss_pred CCCCCCEEE--------EEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 998443677--------761337637771899987655378899999999876967997532256887897899999998
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4100123343110001387426789999983662
Q gi|254780941|r 155 ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 155 ~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
.-.. +..+.+.+|||+|.|++++++.|.+.+|+
T Consensus 155 ~iGi-d~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 155 IIGI-DASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHCC-CCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 7098-95200467634689979999999962898
No 186
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60 E-value=2.6e-14 Score=112.42 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-|+++|.++||||||+.++++..-. ....-|.-+.-.-.+..++ ..+.+.||+|--+ +.........+
T Consensus 3 KivllGd~~VGKTsL~~rf~~~~F~--~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~--------~~~l~~~~y~~ 72 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED--------YNRLRPLSYRG 72 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC--------CCHHHHHHHCC
T ss_conf 9999899997799999999659899--9867853589999999999899999997999765--------42468987267
Q ss_pred HHHHCCCCHHHHHHHCC--HHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-----------HHHHHHHHHCCCCCCCCC
Q ss_conf 32100110000100000--0012234544--28720257872110104345-----------788886410012334311
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN--IHDLLKEIAK--RSSRLILILNKIDCVKPERL-----------LEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~--~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-----------~~~~~~~~~~~~~~~i~~ 166 (311)
+|++++|.|.++..+-. ....+..++. .+.|+++|-||+|+..+... ....+.+.+..+....|.
T Consensus 73 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~E 152 (176)
T cd04133 73 ADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 87579999789878999999999999998684998899998632021222333302467777999999999779978999
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 00013874267899999836
Q gi|254780941|r 167 VSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 167 ISAk~g~Gid~L~~~L~~~l 186 (311)
+||++|.|++++.+.+.+.+
T Consensus 153 tSAk~~~nV~e~F~~~~~~i 172 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 47898809899999999998
No 187
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=1.4e-14 Score=114.12 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=98.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+.+++.....- ...| |.-+...-.+..++ ..+-+.||+|- +.+.......+.+|
T Consensus 2 ivviGd~gVGKTsli~r~~~~~F~~-~y~p-Ti~~~~~k~~~~~~~~~~l~iwDtaG~--------e~~~~l~~~~~r~a 71 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVE-TYDP-TIEDSYRKQVVVDGQPCMLEVLDTAGQ--------EEYTALRDQWIREG 71 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEECCEEEEEEEEECCCC--------CCHHHHHHHHHCCC
T ss_conf 8999989987899999996297998-8699-724788999999999999999989997--------31167889982367
Q ss_pred HHHCCCCHHHHHHHCCH-HHHHHHHH------HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 21001100001000000-01223454------428720257872110104345-78888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELKVNI-HDLLKEIA------KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~-~~il~~l~------~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
|++++|.|.++..+-.. ..+.+.+. ..+.|+++|.||+|+.....+ .+..+.+....+. ..|.+||++|.|
T Consensus 72 ~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~E~SAk~~~n 150 (190)
T cd04144 72 EGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASAKTNVN 150 (190)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 6589997279778999999999999998533799952895145535033057899999999998099-899973588809
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 267899999836622
Q gi|254780941|r 175 CDDVLNYLCSTLPLA 189 (311)
Q Consensus 175 id~L~~~L~~~lpe~ 189 (311)
|+++.+.|++.+.+.
T Consensus 151 V~e~F~~l~~~i~~~ 165 (190)
T cd04144 151 VERAFYTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 799999999999987
No 188
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.60 E-value=1.7e-14 Score=113.60 Aligned_cols=152 Identities=21% Similarity=0.227 Sum_probs=94.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
-|.++|.++||||||+++++...-. ... .|+-. -........+++.+.||+|- +.+.......+.+|+
T Consensus 2 KivllGd~~VGKTsl~~rf~~~~F~--~~~-~Tig~-~~~~k~~~~~~l~IwDTaGq--------E~f~sl~~~y~r~a~ 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DTV-STVGG-AFYLKQWGPYNISIWDTAGR--------EQFHGLGSMYCRGAA 69 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCC-CCCCE-EEEEEECCEEEEEEEECCCC--------CCCCCCHHHHHCCCC
T ss_conf 8999999998899999999729899--988-87136-89998764788999947986--------224332688856798
Q ss_pred HHCCCCHHHHHHHCCHH-HHHHHH---HHCCCCCEEEEEECCCHHHH------------------------HHHHHHHHH
Q ss_conf 10011000010000000-122345---44287202578721101043------------------------457888864
Q gi|254780941|r 104 IVCLVVDSHRELKVNIH-DLLKEI---AKRSSRLILILNKIDCVKPE------------------------RLLEQAEIA 155 (311)
Q Consensus 104 iil~VvDa~~~~~~~~~-~il~~l---~~~~~p~IiVlNKiDlv~~~------------------------~l~~~~~~~ 155 (311)
++++|.|.++..+-... ..+..+ ...+.|+++|-||+||.++. +....++.+
T Consensus 70 ~~ilvyDit~~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~a~~~ 149 (220)
T cd04126 70 AVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRI 149 (220)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 89999979898999999999999998479998089998871213643443333333223441003544899999999985
Q ss_pred HHCCC---------CCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 10012---------334311000138742678999998366
Q gi|254780941|r 156 NKLVF---------IEKTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 156 ~~~~~---------~~~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
..... ....|.+||++|.||+++.+.|.+.+-
T Consensus 150 ~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~ 190 (220)
T cd04126 150 NKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 02202221111245776999147899798999999999999
No 189
>KOG1486 consensus
Probab=99.60 E-value=5e-15 Score=117.11 Aligned_cols=94 Identities=28% Similarity=0.396 Sum_probs=75.6
Q ss_pred CCCE--EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 5121--89983389986889999986892021058888602127899973994899998798401012357532100234
Q gi|254780941|r 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 20 ~ksg--~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
.||| .||++|.|.||||||+..+++.+- ...+...||..-|.|++...+..|-++|.||+++.... ++-.-+.+.+
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsq-gkGRGRQvia 135 (364)
T KOG1486 58 LKSGDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQ-GKGRGRQVIA 135 (364)
T ss_pred ECCCCEEEEEECCCCCCHHHHHHHHHCCHH-HHHCCEEEEEEEECCEEEECCCEEEEECCCCCCCCCCC-CCCCCCEEEE
T ss_conf 315873799964887447878887641102-22110246787303168766834799627530002113-7887726888
Q ss_pred HHHHHHHHCCCCHHHHHH
Q ss_conf 555532100110000100
Q gi|254780941|r 98 TIKHADIVCLVVDSHREL 115 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~ 115 (311)
....||+++.|.||++..
T Consensus 136 vArtaDlilMvLDatk~e 153 (364)
T KOG1486 136 VARTADLILMVLDATKSE 153 (364)
T ss_pred EEECCCEEEEEECCCCCH
T ss_conf 740365899995177615
No 190
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.59 E-value=2.5e-14 Score=112.60 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=99.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 899833899868899999868920210588886021278999739--948999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|-++||||||+.++++..-. -...| |.-+...-.+..+ ..++-++||+|-- .+.......+.+
T Consensus 4 Kiv~lGd~~VGKTsli~r~~~~~f~-~~~~p-Ti~~~~~~~i~i~~~~~~l~iwDtaGqe--------~~~~l~~~~~r~ 73 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFP-DYHDP-TIEDAYKQQARIDNEPALLDILDTAGQA--------EFTAMRDQYMRC 73 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CCCCCEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHCC
T ss_conf 9999999997799999999709899-87588-4222036999999999999999788851--------357451556427
Q ss_pred HHHHCCCCHHHHHHHCC-HHHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 32100110000100000-001223454----428720257872110104345-788886410012334311000138742
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IHDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
+|.+++|.|.++..+-. .....+.+. ..+.|+++|.||+|+.....+ .+....+....+. ..|.+||++|.||
T Consensus 74 a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~e~~~~a~~~~~-~f~EtSAk~~~nV 152 (172)
T cd04141 74 GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAALRHYI 152 (172)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 865688731688889999999999999972889986899850456676188899999999998599-7999747888288
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6789999983662
Q gi|254780941|r 176 DDVLNYLCSTLPL 188 (311)
Q Consensus 176 d~L~~~L~~~lpe 188 (311)
+++.+.|++.+..
T Consensus 153 ~e~F~~l~~~i~~ 165 (172)
T cd04141 153 DDAFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986
No 191
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59 E-value=1.2e-14 Score=114.56 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=98.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++...-. -...| |.-+...-.+..++ ..+-+.||+|-.. +.......+.+|
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~-~~y~~-Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~--------~~~~~~~y~~~a 73 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIFV-EKYDP-TIEDSYRKQIEVDGQQCMLEILDTAGTEQ--------FTAMRDLYIKNG 73 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CCCCEEEEEEEECCEEEEEEECCCCCCHH--------HHHHHHHHHCCC
T ss_conf 999899998899999999719598-86699-54206999999999999998645765445--------556789883468
Q ss_pred HHHCCCCHHHHHHHCCH-HHHHHHHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 21001100001000000-01223454----428720257872110104345-7888864100123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVNI-HDLLKEIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~-~~il~~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
|++++|.|.++..+-.. ..+.+.+. ..+.|+++|.||+|+..+..+ .+..+.+....+. ..|.+||++|.|++
T Consensus 74 ~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~SAk~~~nV~ 152 (163)
T cd04136 74 QGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVD 152 (163)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCHH
T ss_conf 76999704898899999999999999861888886787623547264078999999999998499-89997448780589
Q ss_pred HHHHHHHHHC
Q ss_conf 7899999836
Q gi|254780941|r 177 DVLNYLCSTL 186 (311)
Q Consensus 177 ~L~~~L~~~l 186 (311)
++...|++.+
T Consensus 153 e~F~~l~~~i 162 (163)
T cd04136 153 EVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHH
T ss_conf 9999999963
No 192
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=4.5e-14 Score=110.89 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=96.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9983389986889999986892021058888602-127899973994--8999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
|+++|-++||||||+++++...-. .. ..+|- +.-.-.+..++. .+-+.||+|.- .+.......+.+
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~--~~-y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe--------~~~~i~~~~y~~ 71 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFP--QV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQE--------EFDRLRSLSYAD 71 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CC-CCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHCC
T ss_conf 999997997699999999709999--98-6883789999999999999999998477850--------000355676437
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHHH-------------HHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434578-------------88864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLLE-------------QAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~-------------~~~~~~~~~~~~~i 164 (311)
+|++++|.|.++..+-... ..+..+.. .+.|+++|.||+|+........ ....+.+..+....
T Consensus 72 a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 86459999789878999999999999997497997899998800465323567776630466589999999998299789
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 110001387426789999983662
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
|.+||++|.|++++.+.+++.+-.
T Consensus 152 ~EtSAkt~~nV~e~F~~lar~~l~ 175 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 996806794989999999999973
No 193
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=4.9e-14 Score=110.66 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=95.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 21899833899868899999868920210588886021278999739--9489999879840101235753210023455
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
|-.|+++|-++||||||+.+++...-. .....|--+...-.+..+ ...+-+.||+|-. .+.......+
T Consensus 1 siKivlvGd~~VGKTsli~r~~~~~f~--~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe--------~~~~~~~~~~ 70 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--------DYDRLRPLSY 70 (174)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEECCCCCC--------CCHHHHHHHH
T ss_conf 969999899998699999999739999--986883788767999999999999998699972--------4067889987
Q ss_pred HHHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHHH-------------HHHHHHHCCCCC
Q ss_conf 553210011000010000000--12234544--2872025787211010434578-------------888641001233
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLLE-------------QAEIANKLVFIE 162 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~-------------~~~~~~~~~~~~ 162 (311)
.++|++++|.|.++..+-... .....+.. .+.|+++|.||+|+.++..... ....+.+..+..
T Consensus 71 ~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 40668999986798788999999999999985889997987473013100456778865146775899999999875997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 43110001387426789999983
Q gi|254780941|r 163 KTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 163 ~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
..|.+||++|.|++++.+.+.+.
T Consensus 151 ~f~EtSAk~~~nV~e~F~~lir~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH
T ss_conf 89991878895979999999951
No 194
>KOG1490 consensus
Probab=99.59 E-value=1.6e-15 Score=120.24 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=105.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHH-CCCCCCCCCC--
Q ss_conf 3685121899833899868899999868920210588886021278999739948999987984010-1235753210--
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA-KDSYHKLMIR-- 93 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~-~~~l~~~~~~-- 93 (311)
++++|. ..|.|.|||||||++|.++..++- |.+.|.||+.-..|-.-..=-.+..+||||+... ....|-....
T Consensus 165 Dp~trT--lllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490 165 DPNTRT--LLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCCE--EEEECCCCCCCHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 888671--798527887737643552015555-57766551012100203240234403884124760543217999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCHHHH---HHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHH-HHCCC--CCCCC
Q ss_conf 02345555321001100001000000012---234544--287202578721101043457888864-10012--33431
Q gi|254780941|r 94 LSWSTIKHADIVCLVVDSHRELKVNIHDL---LKEIAK--RSSRLILILNKIDCVKPERLLEQAEIA-NKLVF--IEKTF 165 (311)
Q Consensus 94 ~~~~~l~~aDiil~VvDa~~~~~~~~~~i---l~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~-~~~~~--~~~i~ 165 (311)
.|...+.. .|||+.|.+...+...... +..++. .++|+|+|+||+|....+.+.+.-+.+ +.... .-.++
T Consensus 242 TALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~ 319 (620)
T KOG1490 242 TALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV 319 (620)
T ss_pred HHHHHHHH--HHEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 99987565--6411343221208889999999987678862884699952002568656687889999998860483388
Q ss_pred CCCCCCCCCHHHHHHHHHHHC
Q ss_conf 100013874267899999836
Q gi|254780941|r 166 MVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 166 ~ISAk~g~Gid~L~~~L~~~l 186 (311)
..|..+..|+-+++..-++.|
T Consensus 320 ~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490 320 QTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred EECCCCHHCEEEHHHHHHHHH
T ss_conf 732554002000777899999
No 195
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.58 E-value=3.6e-15 Score=117.98 Aligned_cols=62 Identities=39% Similarity=0.508 Sum_probs=50.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC
Q ss_conf 51218998338998688999998689202105888860212789997399489999879840101
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~ 84 (311)
.++..|++||.||||||||+|+|.|++.+.||+.||+||... .+.-.+ .+.++||||+.-++
T Consensus 116 ~~~i~v~vVG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tr~~q-~i~l~~--~i~llDtPGvl~P~ 177 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ-WIKLSD--GLELLDTPGILWPK 177 (276)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEE-EEEECC--CEEEECCCCCCCCC
T ss_conf 786389997279875899999873672587779654210258-999579--77996688745788
No 196
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=3.2e-14 Score=111.84 Aligned_cols=106 Identities=24% Similarity=0.265 Sum_probs=81.7
Q ss_pred ECCCCCCHHHHHHHHHCCCEEEECCCC-----CCE--------------EEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 338998688999998689202105888-----860--------------2127899973994899998798401012357
Q gi|254780941|r 28 VGATNAGKSTLVNRFVGAKVSIVTHKV-----QTT--------------RSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 28 vG~pN~GKSTL~N~l~g~~vsivS~k~-----~TT--------------r~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
+|.-.+|||||.-+|+-..=.+ +++ ++| -......+..++++|.|+||||..+
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i--~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPGHvD------ 72 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAI--HRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPGHVD------ 72 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCC------
T ss_conf 9899888889999999965998--75761438971467809999739973221388988998999992979751------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 5321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
+...+..++.-+|.+++||||..+...+...+++++.+.+.|.++++||+|+.
T Consensus 73 --F~~EV~~aLrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~ 125 (670)
T PRK12740 73 --FTGEVERALRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRA 125 (670)
T ss_pred --HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf --48999999998686899997899973789999999998799969999797899
No 197
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=4.8e-14 Score=110.73 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|.++||||||+.+++...-. .....|.-+.....+..++ ..+.+.||+|-- .+.......+.+
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~~F~--~~y~pT~~~~~~~~i~~~~~~v~l~iwDtaG~e--------~~~~l~~~~~~~ 71 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD--------EFDKLRPLCYPD 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCHHHHHHHCC
T ss_conf 8999998997889999999619999--985783589999999999999999999899873--------443456766137
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i 164 (311)
+|++++|.|.++..+-... ..+..+.. .+.|+++|-||+|+..... ..+..+.+.+..+....
T Consensus 72 a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~y 151 (173)
T cd04130 72 TDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY 151 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899999659878899999999999996098998899988701100133554443325755789999999998499689
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q ss_conf 1100013874267899999
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~ 183 (311)
|.+||++|.|++++.+.++
T Consensus 152 ~EtSAkt~~nV~e~Fe~~i 170 (173)
T cd04130 152 IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEECCCCCCCHHHHHHHHH
T ss_conf 9968688969799999998
No 198
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58 E-value=6.5e-14 Score=109.88 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=96.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399--4899998798401012357532100234555
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-.|+++|.++||||||+++++...-. +....|.-+...-.+..++ ..+.++||+|-.. ........+.
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~f~--~~y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~--------~~~l~~~~~~ 71 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED--------YDRLRPLSYP 71 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC--------CHHHHHHHHH
T ss_conf 79999899995889999999649899--9867863478999999999999999998999745--------1246588771
Q ss_pred HHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCC
Q ss_conf 53210011000010000000--12234544--28720257872110104345-------------788886410012334
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEK 163 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~ 163 (311)
++|++++|.|.++..+-... ..+..+.. .+.|+++|.||+|+.+.... .+..+.+.+..+...
T Consensus 72 ~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~ 151 (175)
T cd01874 72 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK 151 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 38888999637987889999999999999829899889999872033566667776440265668999999999759959
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 31100013874267899999836
Q gi|254780941|r 164 TFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 164 i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
.|.+||++|.|++++.+.++..+
T Consensus 152 y~EtSAk~g~nV~e~F~~~i~~A 174 (175)
T cd01874 152 YVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99913378959799999999986
No 199
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.58 E-value=2.5e-14 Score=112.53 Aligned_cols=153 Identities=27% Similarity=0.309 Sum_probs=95.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|-++||||||+++++...-. +....|+-+.....+..++ ..+.+.||+|--... . ....+.+..|
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~f~--~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~----~---~~~~~~~~~a 72 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD----T---EQLERSIRWA 72 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCC----H---HHHHHHCCCC
T ss_conf 999998997789999999749899--875995563057999999999999999289850122----0---1255430458
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH-----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCC-CC
Q ss_conf 2100110000100000-001223454-----428720257872110104345-788886410012334311000138-74
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA-----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKG-HG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~-----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g-~G 174 (311)
|++++|.|.++..+-. ...++..+. ..+.|+++|.||+|+..+..+ .+..+.+.+..+. ..|.+||++| .|
T Consensus 73 ~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~a~~~~~-~f~E~SAk~~~~~ 151 (165)
T cd04146 73 DGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAAEDYDG 151 (165)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCC
T ss_conf 789999865888999999999999999846699953998445545210367799999999998199-8999752087826
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
++++.+.|++.+.
T Consensus 152 V~~~F~~l~~~i~ 164 (165)
T cd04146 152 VHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999966
No 200
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=7.7e-15 Score=115.87 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC-----CCEEEECCCCCCEEEEEEEEEEECCE-EEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf 1899833899868899999868-----92021058888602127899973994-89999879840101235753210023
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVG-----AKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGIFNAKDSYHKLMIRLSW 96 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g-----~~vsivS~k~~TTr~~i~gi~~~~~~-qiifvDTPG~~~~~~~l~~~~~~~~~ 96 (311)
..||++|-+++|||||+|||.| ...|.|.- ..||+.+.. +.+.+. .++++|+||+.......+.++.+.
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv-~eTT~~~~~--Y~~p~~pnv~lwDlPG~Gt~~f~~~~Yl~~~-- 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV-VETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEEM-- 76 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCEE--CCCCCCCCCEEECCCCCCCCCCCHHHHHHHC--
T ss_conf 17999558998689999998688988777588888-746778620--4799999876972899998765989999865--
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH-H-----------HHHHHHHHH-----HHHHC-
Q ss_conf 45555321001100001000000012234544287202578721101-0-----------434578888-----64100-
Q gi|254780941|r 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV-K-----------PERLLEQAE-----IANKL- 158 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv-~-----------~~~l~~~~~-----~~~~~- 158 (311)
.+...|++|.+.+ ..++..+..++..+...++++.+|-||+|.- . ++++++.+. .+.+.
T Consensus 77 -~~~~yD~fiiiss--~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c~~~L~~~g 153 (197)
T cd04104 77 -KFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred -CCCCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf -8554578999838--8641426999999998099289998612140005663787665999999999999999999869
Q ss_pred CCCCCCCCCCCCC--CCCHHHHHHHHHHHCCCC
Q ss_conf 1233431100013--874267899999836622
Q gi|254780941|r 159 VFIEKTFMVSATK--GHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 159 ~~~~~i~~ISAk~--g~Gid~L~~~L~~~lpe~ 189 (311)
.....||.||... .+....|.+.|.+.||..
T Consensus 154 v~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999998999379822077689999999980898
No 201
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=4e-14 Score=111.26 Aligned_cols=152 Identities=23% Similarity=0.278 Sum_probs=97.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+++++..+-.- ...| |.-+-..-.+..++ .++-++||+|-.. +.......+.++
T Consensus 3 IvvlGdsgVGKTSLi~Rf~~~~F~~-~y~p-Ti~d~~~k~i~i~g~~v~L~IwDTaGqe~--------f~sl~~~y~~~a 72 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGRFEE-QYTP-TIEDFHRKLYSIRGEVYQLDILDTSGNHP--------FPAMRRLSILTG 72 (247)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC-CCCC-CHHHEEEEEEEECCEEEEEEEEECCCCCC--------CCCCHHHHHHCC
T ss_conf 9999989978999999996496899-8788-83531889999999999999996766536--------874420131217
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH------------HCCCCCEEEEEECCCHHHHHH-HHHHHHH-HHCCCCCCCCCC
Q ss_conf 2100110000100000-001223454------------428720257872110104345-7888864-100123343110
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA------------KRSSRLILILNKIDCVKPERL-LEQAEIA-NKLVFIEKTFMV 167 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~------------~~~~p~IiVlNKiDlv~~~~l-~~~~~~~-~~~~~~~~i~~I 167 (311)
|++++|.|.++..+-+ ...+++++. ..+.|+++|-||+|+-....+ .+..+.+ ....+ -..|.+
T Consensus 73 ~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R~Vs~eEa~~~~A~~~~-~~f~Et 151 (247)
T cd04143 73 DVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDEN-CAYFEV 151 (247)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCC-CEEEEC
T ss_conf 7899999799878999899999999986400100135788875899866554320178799999999997689-879988
Q ss_pred CCCCCCCHHHHHHHHHHHCC
Q ss_conf 00138742678999998366
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~lp 187 (311)
||++|.||+++...|...+.
T Consensus 152 SAKt~~NV~E~F~~L~~~~~ 171 (247)
T cd04143 152 SAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCCCHHHHHHHHHHHCC
T ss_conf 78999498999999998549
No 202
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.57 E-value=2.3e-14 Score=112.80 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE-EEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8998338998688999998689202105888860-212789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT-RSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT-r~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.|+++|.++||||+|+++++...-.. ...| |. .+--.-.+..++ ..+-+.||||..+-....+..........+.
T Consensus 2 KivvlG~~gVGKTsli~rf~~~~F~~-~y~p-Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe~~~~r~~~ir 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE-EYIP-TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 89999979989999999997198888-7478-466167899999999999999995877304555652123555644014
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHH------HCCCCCEEEEEECCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 532100110000100000-001223454------4287202578721101043457-88886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIA------KRSSRLILILNKIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~------~~~~p~IiVlNKiDlv~~~~l~-~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
++|.+++|.|.++..+-+ ...+.+++. ....|+++|-||+|+.....+. +..+.+.........+.+||++|
T Consensus 80 ~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~~~~~~f~EtSAK~~ 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 68889999988677888999999999999851479998289983454310035688999999998519976998878899
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 742678999998366223
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~~ 190 (311)
.|++++.+.|...+..+.
T Consensus 160 ~nV~~~F~~lvr~i~~~~ 177 (198)
T cd04142 160 WHILLLFKELLISATTRG 177 (198)
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 698999999999998604
No 203
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-14 Score=114.64 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=122.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE--EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 899833899868899999868920--210588886021278999739948999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV--SIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v--sivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+..|.---||+||+-+++|..- .+-..|-|||-+--..-...+++-+.|+|.|| +..+++....++..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpg--------h~~~i~~miag~~~ 73 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPG--------HPDFISNLLAGLGG 73 (447)
T ss_pred EEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCC--------CHHHHHHHHHHHCC
T ss_conf 6997400201430223330255332054566158468420573257777368861898--------47889999854057
Q ss_pred HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHH
Q ss_conf 32100110000100000001223454428720-2578721101043457888864100--12334311000138742678
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDV 178 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~-IiVlNKiDlv~~~~l~~~~~~~~~~--~~~~~i~~ISAk~g~Gid~L 178 (311)
+|.+++|||+++++..+..+.+..+.-.+.+- ++|+||+|.++..++....+.+... +...++|++||++|+|+++|
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~Gi~~L 153 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 74589998475576643688999998619873289996223446788999999998650200032301101257877999
Q ss_pred HHHHHHHC
Q ss_conf 99999836
Q gi|254780941|r 179 LNYLCSTL 186 (311)
Q Consensus 179 ~~~L~~~l 186 (311)
+++|.+.+
T Consensus 154 k~~l~~L~ 161 (447)
T COG3276 154 KNELIDLL 161 (447)
T ss_pred HHHHHHHH
T ss_conf 99998752
No 204
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.57 E-value=5.5e-14 Score=110.35 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|-++||||||+.++++..-. -...| |.-+...-.++.++ ..+-+.||+|-- .+.......+.+
T Consensus 2 Kiv~vGd~~VGKTsli~rf~~~~f~-~~y~p-Ti~~~~~~~i~v~~~~~~l~i~DTaG~e--------~~~~~~~~~~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQE--------DYDRLRPLSYPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-EEEEEEEEEEEECCEEEEEEEEECCCCC--------CCHHHHHHHHCC
T ss_conf 8999998998599999999629899-88688-5752022799999999999999797640--------315565998557
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i 164 (311)
+|++++|.|.++..+-... ..+..++. .+.|+++|-||+|+.+... -.+..+.+.+..+....
T Consensus 72 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~~f 151 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY 151 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87678984379778899999999999998684998899968523004434554530045766399999999997799899
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 110001387426789999983
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~ 185 (311)
|.+||++|.||+++.+.++..
T Consensus 152 ~E~SAkt~~nV~e~F~~~i~~ 172 (174)
T cd04135 152 VECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEECCCCCCCHHHHHHHHHHH
T ss_conf 990548794989999999999
No 205
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.57 E-value=9.4e-14 Score=108.86 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=96.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 1218998338998688999998689202105888860212789997399--48999987984010123575321002345
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
|.-.|+++|-++||||||+.+++.....- ...| |.-+...-....++ ..+-+.||+|.-+ +.......
T Consensus 2 ~~~KivlvGd~~VGKTsli~r~~~~~F~~-~y~p-ti~~~~~~~~~i~~~~v~l~iwDtaG~e~--------~~~~~~~~ 71 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK-EYIP-TVFDNYSAQTAVDGRTVSLNLWDTAGQEE--------YDRLRTLS 71 (191)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEECCEEEEEEEEECCCCCC--------HHHHHHHH
T ss_conf 51899999999989999999997299998-6466-21000467899999999999985888700--------35677877
Q ss_pred HHHHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHH-------------HHHHHHHHCCCC
Q ss_conf 5553210011000010000000--12234544--287202578721101043457-------------888864100123
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLL-------------EQAEIANKLVFI 161 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~-------------~~~~~~~~~~~~ 161 (311)
..++|++++|.|.++..+-... ..+..+.. .+.|+++|.||+|+..+.... +....+.+..+.
T Consensus 72 ~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 44786899998579778899999999999997096997899988801023457788877641375569999999998099
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3431100013874267899999836
Q gi|254780941|r 162 EKTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 162 ~~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
...+.+||++|.|++++.+.+.+.+
T Consensus 152 ~~y~EtSAkt~~nV~e~F~~l~k~i 176 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 8899906898969899999999998
No 206
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.57 E-value=5.8e-14 Score=110.20 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=96.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-|+++|.++||||||++++++..-. .....|.-+.-...+..++ ..+-+.||+|-.+ ...+. ...+.+
T Consensus 3 KivllGd~~VGKTsLi~r~~~~~f~--~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~-----~~~~~---~~~~~~ 72 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE-----YERLR---PLSYSK 72 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCC-----CCCCC---CCEECC
T ss_conf 9999998997689999999829899--9878866789899999999999999997888703-----45460---412338
Q ss_pred HHHHCCCCHHHHHHHCC-HH-HHHHHHHH--CCCCCEEEEEECCCHHH----------HH-HHHHHHHHHHCCCCCCCCC
Q ss_conf 32100110000100000-00-12234544--28720257872110104----------34-5788886410012334311
Q gi|254780941|r 102 ADIVCLVVDSHRELKVN-IH-DLLKEIAK--RSSRLILILNKIDCVKP----------ER-LLEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~-~~-~il~~l~~--~~~p~IiVlNKiDlv~~----------~~-l~~~~~~~~~~~~~~~i~~ 166 (311)
+|++++|.|.++..+-. .. ..+..+.. .+.|+++|.||+|+-.. .. ..+....+.+..+....|.
T Consensus 73 a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y~E 152 (187)
T cd04129 73 AHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYME 152 (187)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 85899970269866799999999999998587998899988600113411211122315578999999999849978999
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 00013874267899999836
Q gi|254780941|r 167 VSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 167 ISAk~g~Gid~L~~~L~~~l 186 (311)
+||++|.|++++.+.+.+.+
T Consensus 153 tSAk~~~nV~e~F~~~~r~~ 172 (187)
T cd04129 153 CSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 68899979899999999999
No 207
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=6.2e-14 Score=110.00 Aligned_cols=151 Identities=23% Similarity=0.308 Sum_probs=98.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEEC---CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 9983389986889999986892021058888602--1278999739---9489999879840101235753210023455
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEK---ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~---~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
|+++|-++||||+|+++++..+-.-- ..+|- +-..-.+... ..++.+.||+|-- .+.......+
T Consensus 5 ivllGd~~VGKTsL~~rf~~~~F~~~---~~~Tig~df~~k~i~i~dg~~v~l~IwDTaGqe--------~~~si~~~yy 73 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGRFAEV---SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE--------RFRSITRSYY 73 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC---CCCCCCEEEEEEEEEECCCCEEEEEEEECCCCC--------CCCCCHHHHH
T ss_conf 99999999619999999981999998---687201688998999779959999999798863--------4564428774
Q ss_pred HHHHHHCCCCHHHHHHHC-CHHHHHHHHHH----CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 553210011000010000-00012234544----28720257872110104345-7888864100123343110001387
Q gi|254780941|r 100 KHADIVCLVVDSHRELKV-NIHDLLKEIAK----RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~-~~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
.+++.+++|.|.++..+- .....++.+.. ...|+++|-||+|+....++ .+..+.+.+..+. ..|.+||++|.
T Consensus 74 r~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~~~-~f~EtSAK~g~ 152 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIETSARTGD 152 (211)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCC-EEEEECCCCCC
T ss_conf 21244689714777799999999999999974988853898874231285678899999999998399-79997599981
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 42678999998366
Q gi|254780941|r 174 GCDDVLNYLCSTLP 187 (311)
Q Consensus 174 Gid~L~~~L~~~lp 187 (311)
||+++.+.|.+.+-
T Consensus 153 nV~e~F~~la~~i~ 166 (211)
T cd04111 153 NVEEAFELLTQEIY 166 (211)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999999
No 208
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=99.57 E-value=6.5e-15 Score=116.37 Aligned_cols=60 Identities=35% Similarity=0.479 Sum_probs=49.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC
Q ss_conf 218998338998688999998689202105888860212789997399489999879840101
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~ 84 (311)
...|++||.||||||||+|+|.|++.+.||+.||+||+.. .+. .++ ++.++||||+.-++
T Consensus 121 ~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q-~v~-l~~-~i~L~DtPGvl~P~ 180 (282)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKSQQ-WIK-LGK-GLELLDTPGILWPK 180 (282)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCEEEEE-EEE-ECC-CEEEECCCCCCCCC
T ss_conf 6389997069776799999874770587679654100258-999-579-88996688745788
No 209
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.56 E-value=1.9e-14 Score=113.33 Aligned_cols=162 Identities=28% Similarity=0.367 Sum_probs=132.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC--CCEEEEEEEEEEECC-----------EEEEEEECCCC--HHHCCC
Q ss_conf 218998338998688999998689202105888--860212789997399-----------48999987984--010123
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV--QTTRSIVRGIVSEKE-----------SQIVFLDTPGI--FNAKDS 86 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~--~TTr~~i~gi~~~~~-----------~qiifvDTPG~--~~~~~~ 86 (311)
...++++|.||+|||||+|.+.+.+.++++..| ++|++........++ +++.++||||+ +.....
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~ 82 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDA 82 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 50589973477660455544541012001023233320000001134558023434310242789862577113555544
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH-----HHHHHHHHHHHCCCC
Q ss_conf 575321002345555321001100001000000012234544287202578721101043-----457888864100123
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFI 161 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~-----~l~~~~~~~~~~~~~ 161 (311)
+.+.....+...+..+|+++++.+...........+.......+.|++++.||+|+.... .+.............
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
T TIGR00231 83 LRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLNG 162 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHCC
T ss_conf 54332234454443333333222111001025677875322127416998513365546754010000345555554236
Q ss_pred CC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 34-31100013874267899999
Q gi|254780941|r 162 EK-TFMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 162 ~~-i~~ISAk~g~Gid~L~~~L~ 183 (311)
.. .+++|+.++.|++.+.+.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~ 185 (186)
T TIGR00231 163 EPHFIPLSAETGKGIDSLFGLVE 185 (186)
T ss_pred CCCEEECCHHHHCCHHHHHHHHC
T ss_conf 64011110011100455666542
No 210
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=1e-13 Score=108.54 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=99.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 189983389986889999986892021058888602--12789997399--48999987984010123575321002345
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
..|+++|.++||||||+.++++..-. ...+.|- +-..-.++.++ .++-+.||+|--. +... .....
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~F~---~~~~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~----~~~s---~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFP---ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER----FRKS---MVQHY 72 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHH----HHHH---HHHHH
T ss_conf 99999997997799999999539889---98788630787899999999999999997788530----5677---78998
Q ss_pred HHHHHHHCCCCHHHHHHHCC-HHHHHHHHHH----CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCC--
Q ss_conf 55532100110000100000-0012234544----28720257872110104345-7888864100123343110001--
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVN-IHDLLKEIAK----RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSAT-- 170 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~-~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk-- 170 (311)
+.+||++++|.|.++..+-. ....++.+.. ...|+++|.||+|+.+...+ .+..+.+.+..+ ...|.+|||
T Consensus 73 ~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~-~~~~E~SAK~~ 151 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDP 151 (170)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 45773579995047476799999999999986588899799999982134117879999999999779-99999888998
Q ss_pred -CCCCHHHHHHHHHHHCC
Q ss_conf -38742678999998366
Q gi|254780941|r 171 -KGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 171 -~g~Gid~L~~~L~~~lp 187 (311)
+|+|++++...|.+.++
T Consensus 152 ~~~~nV~~~F~~la~~i~ 169 (170)
T cd04115 152 SENDHVEAIFMTLAHKLK 169 (170)
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 517088999999999960
No 211
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.55 E-value=1.2e-14 Score=114.53 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=99.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC----------CEEEECCCCCC----------------------EEEEEEEEEEECC
Q ss_conf 218998338998688999998689----------20210588886----------------------0212789997399
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGA----------KVSIVTHKVQT----------------------TRSIVRGIVSEKE 69 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~----------~vsivS~k~~T----------------------Tr~~i~gi~~~~~ 69 (311)
-..+..+|..-.|||||+-+|+-. ++...|.+.++ |-+.-.--...++
T Consensus 7 ~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t~~ 86 (613)
T PRK05506 7 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFSTPK 86 (613)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 25899993667978889889999819967899999999999818988860354421488889855971685677884387
Q ss_pred EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHH--H
Q ss_conf 489999879840101235753210023455553210011000010000000122345442872-0257872110104--3
Q gi|254780941|r 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKP--E 146 (311)
Q Consensus 70 ~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~--~ 146 (311)
..++++|+|| ++.+.+........||+.++||||.++..++..+....+.-.+.+ +|+++||+|+++- +
T Consensus 87 r~~~i~DaPG--------H~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~~~ 158 (613)
T PRK05506 87 RKFIVADTPG--------HEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYDQE 158 (613)
T ss_pred EEEEEECCCC--------HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHH
T ss_conf 0599942896--------79899899987865387999998887951551899999987298759999852012478199
Q ss_pred H---HHHHHHHHHHCCCC--CCCCCCCCCCCCCHHH
Q ss_conf 4---57888864100123--3431100013874267
Q gi|254780941|r 147 R---LLEQAEIANKLVFI--EKTFMVSATKGHGCDD 177 (311)
Q Consensus 147 ~---l~~~~~~~~~~~~~--~~i~~ISAk~g~Gid~ 177 (311)
. +......+.+.+++ ..++||||++|+|+-.
T Consensus 159 ~f~~I~~~~~~~~~~l~~~~~~~IPISAl~GDNVv~ 194 (613)
T PRK05506 159 VFDRIVADYLAFAAKLGLTDVTFIPISALKGDNVVT 194 (613)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEE
T ss_conf 999999999999965799887599673574874767
No 212
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.55 E-value=1e-13 Score=108.65 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=95.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9983389986889999986892021058888602--1278999739--94899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|+++|-++||||+|+++++...-. .... .||- +...-.++.+ ..++.++||||..... . ......
T Consensus 3 VvllGd~gVGKTSLi~rf~~~~f~-~~~y-~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~--------~-~~~~~~ 71 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYD-DHAY-DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWT--------E-DSCMQY 71 (221)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCC-CCCC-CCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------H-HHHHHH
T ss_conf 999998997099999999819869-8667-8744248899999999999899999898731266--------6-656530
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH----CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 53210011000010000-00012234544----28720257872110104345-78888641001233431100013874
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK----RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
.+|++++|.|.++..+- ...+++..+.. .+.|+|+|-||+|+.....+ .+..+.+...++. ..|.+||++|.|
T Consensus 72 ~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~-~F~EtSAk~~~N 150 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETSAGLQHN 150 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEECCCCCCCC
T ss_conf 6868999996466778888999999999864899951999853566686389999999999998599-899945799949
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
++++.+.|...+.
T Consensus 151 V~elF~~lvrqIr 163 (221)
T cd04148 151 VDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999998
No 213
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.55 E-value=1.3e-14 Score=114.35 Aligned_cols=56 Identities=32% Similarity=0.482 Sum_probs=47.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 21899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
...|++||.||||||||+|+|.|++.+.||++||+||+... + ..+ ..+.++||||+
T Consensus 117 ~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q~-i-~l~-~~i~L~DtPGv 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE-V-HLD-KKVKLLDSPGI 172 (172)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-E-EEC-CCEEEEECCCC
T ss_conf 55999983477425789988734744776599954766799-9-958-99899969199
No 214
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.54 E-value=7.6e-15 Score=115.91 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHCCCEEEECCCCC-CEEE---------EEEEEE-----------EECCEEEEEEECCCCHHHCCCCCCCC
Q ss_conf 86889999986892021058888-6021---------278999-----------73994899998798401012357532
Q gi|254780941|r 33 AGKSTLVNRFVGAKVSIVTHKVQ-TTRS---------IVRGIV-----------SEKESQIVFLDTPGIFNAKDSYHKLM 91 (311)
Q Consensus 33 ~GKSTL~N~l~g~~vsivS~k~~-TTr~---------~i~gi~-----------~~~~~qiifvDTPG~~~~~~~l~~~~ 91 (311)
|--+|||-++-|++|+ +.-|| -|.+ -|.+++ +.++ +.|+|||| |+.-..|.++-
T Consensus 561 vhnTTLLDkIRks~Vv--~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPG--LLfIDTPG-HeaFt~LRkRG 635 (1145)
T TIGR00491 561 VHNTTLLDKIRKSAVV--KKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPG--LLFIDTPG-HEAFTNLRKRG 635 (1145)
T ss_pred EECCCCCCCCCCCCEE--EECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCE--EEEEECCC-CHHHHCCCCCC
T ss_conf 8514331000334013--2477884010066654668986513212114025786580--15860786-23442201001
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH----HH---------------------
Q ss_conf 10023455553210011000010000000122345442872025787211010----43---------------------
Q gi|254780941|r 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK----PE--------------------- 146 (311)
Q Consensus 92 ~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~----~~--------------------- 146 (311)
=.-||++++|||.++++.++..+.++-|+..+.|++++.||+|++. ++
T Consensus 636 -------GAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~~ 708 (1145)
T TIGR00491 636 -------GALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLDK 708 (1145)
T ss_pred -------CHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf -------0363011013410269840348999996128987289503305588964548851666654111678866887
Q ss_pred HHHHHHHH--HHHC----------CCCC---CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 45788886--4100----------1233---431100013874267899999836
Q gi|254780941|r 147 RLLEQAEI--ANKL----------VFIE---KTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 147 ~l~~~~~~--~~~~----------~~~~---~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
++....-. +.+. .+|. .|+||||.||+||.+|+--|.-++
T Consensus 709 ~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLA 763 (1145)
T TIGR00491 709 KVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLA 763 (1145)
T ss_pred HHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7898873022112588712255200001136898866567897489999998888
No 215
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.54 E-value=1.6e-13 Score=107.28 Aligned_cols=152 Identities=19% Similarity=0.203 Sum_probs=96.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEE-C--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9983389986889999986892021058888602-127899973-9--94899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSE-K--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~-~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|.++|-++||||||+++++...-. ....+|.- +-..-.++. + +..+-+.||+|-. .+.......+.
T Consensus 3 vvllGd~~VGKTSli~rf~~~~F~--~~y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe--------~~~~~~~~y~~ 72 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS--------IGGKMLDKYIY 72 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCC--------CHHHHHHHHHH
T ss_conf 999999997099999999749898--87788655788999999879946999999699850--------02378999997
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH----C--CCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 532100110000100000-0012234544----2--8720257872110104345-788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK----R--SSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~----~--~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
++|++++|.|.++..+-+ ....++.+.+ . ..++++|-||+|+.....+ .+..+.+....+. ..|.+||++|
T Consensus 73 ~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~g~-~f~E~SAktg 151 (215)
T cd04109 73 GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVSAKTG 151 (215)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 515137741478678999899999999998504577852999975454286477699999999998299-8999838999
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 742678999998366
Q gi|254780941|r 173 HGCDDVLNYLCSTLP 187 (311)
Q Consensus 173 ~Gid~L~~~L~~~lp 187 (311)
.||+++...|+..+.
T Consensus 152 ~nV~e~F~~la~~i~ 166 (215)
T cd04109 152 DRVNLLFQQLAAELL 166 (215)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 498999999999997
No 216
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=2.1e-13 Score=106.63 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=96.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|-++||||||++++++..-. ....| |.-+.....+..++ ..+.+.||+|-- .+.........+
T Consensus 3 KivlvGd~~VGKTsLi~r~~~~~F~-~~y~p-Ti~~~~~~~~~v~~~~v~l~iwDTaGqe--------~~~~l~~~~y~~ 72 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP-ETYVP-TVFENYTASFEIDEQRIELSLWDTSGSP--------YYDNVRPLCYPD 72 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCC-CEEEEEEEEEEECCEEEEEEEEECCCCH--------HHCCHHHHHHCC
T ss_conf 9999999997789999999639999-98578-5688889999999999999999689874--------211036677346
Q ss_pred HHHHCCCCHHHHHHHCCH--HHHHHHHHH--CCCCCEEEEEECCCHHHHH------------H-HHHHHHHHHCCCCCCC
Q ss_conf 321001100001000000--012234544--2872025787211010434------------5-7888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNI--HDLLKEIAK--RSSRLILILNKIDCVKPER------------L-LEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~--~~il~~l~~--~~~p~IiVlNKiDlv~~~~------------l-~~~~~~~~~~~~~~~i 164 (311)
+|++++|.|.++..+-+. ...+.+++. .+.|+++|.||+|+..+.. + .+....+.+..+....
T Consensus 73 a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A~~~ga~~y 152 (178)
T cd04131 73 SDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIY 152 (178)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899997379878899999999999998687998899998543664445566776446777689999999997499899
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHC
Q ss_conf 110001387-4267899999836
Q gi|254780941|r 165 FMVSATKGH-GCDDVLNYLCSTL 186 (311)
Q Consensus 165 ~~ISAk~g~-Gid~L~~~L~~~l 186 (311)
+.+||++|+ |++++.+.+...+
T Consensus 153 ~EtSAktg~ngV~evF~~a~~~~ 175 (178)
T cd04131 153 LECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred EECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99784868739899999999998
No 217
>pfam00350 Dynamin_N Dynamin family.
Probab=99.54 E-value=1.6e-14 Score=113.84 Aligned_cols=111 Identities=30% Similarity=0.366 Sum_probs=78.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEE---------------------------------------
Q ss_conf 99833899868899999868920210588886021278999---------------------------------------
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV--------------------------------------- 65 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~--------------------------------------- 65 (311)
|+++|..++|||||+|+|+|.++.+++..| |||.++.-.+
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGP-TTRRPLVLRLGEEPGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKI 79 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989917889899999999788736889976-5167189995788765554121112333001488999999999755431
Q ss_pred -----------------EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHH-HHHH
Q ss_conf -----------------7399489999879840101235753210023455553210011000010000000122-3454
Q gi|254780941|r 66 -----------------SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIA 127 (311)
Q Consensus 66 -----------------~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il-~~l~ 127 (311)
......++|+||||+.... ..++ +.+.+.+..+|+++||++|+......+...+ +.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~lvDtPGl~s~~-~~~~---~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d 155 (168)
T pfam00350 80 SGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVA-VGDQ---DLTEEYIKPADIILAVVDANHDLSTSEALFLAREVD 155 (168)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCC-CCCH---HHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 345778777108998368888881898279865444-3369---999999853866999984695166619999999739
Q ss_pred HCCCCCEEEEEEC
Q ss_conf 4287202578721
Q gi|254780941|r 128 KRSSRLILILNKI 140 (311)
Q Consensus 128 ~~~~p~IiVlNKi 140 (311)
..+.+.+.|+||.
T Consensus 156 ~~~~r~i~V~tk~ 168 (168)
T pfam00350 156 PNGKRTIGVLTKD 168 (168)
T ss_pred CCCCEEEEEECCC
T ss_conf 9998389998188
No 218
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.6e-14 Score=109.86 Aligned_cols=156 Identities=24% Similarity=0.309 Sum_probs=100.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC------------------------CEEEECCCC------CCEEEEEEEEEEECCEEE
Q ss_conf 18998338998688999998689------------------------202105888------860212789997399489
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA------------------------KVSIVTHKV------QTTRSIVRGIVSEKESQI 72 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~------------------------~vsivS~k~------~TTr~~i~gi~~~~~~qi 72 (311)
-.++++|.+++|||||+-+|+=+ +.|-+-++- +-|-+.-..-...+.+.+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEE
T ss_conf 28999837878703445565777379798999999999986197716899985388667866668997778864377058
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH-------HHCCHHHHHHHHHHCCCC-CEEEEEECCCHH
Q ss_conf 999879840101235753210023455553210011000010-------000000122345442872-025787211010
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-------LKVNIHDLLKEIAKRSSR-LILILNKIDCVK 144 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~-------~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~ 144 (311)
.++|+|| | +.+++.....+..||+.++||||+.+ ...+..+.+-..+..++. +|+++||+|.++
T Consensus 88 tIiDaPG-H-------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 88 TIIDAPG-H-------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred EEEECCC-H-------HHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9960784-6-------7789876313313367999998889831014365875167899998569756999997156666
Q ss_pred H--HH---HHHHHHHHHHCCCCC----CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 4--34---578888641001233----4311000138742678999998366223568
Q gi|254780941|r 145 P--ER---LLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 (311)
Q Consensus 145 ~--~~---l~~~~~~~~~~~~~~----~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y 193 (311)
- ++ +......+.+..++. ..+||||.+|.|+.+-- ...|||-
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~ 210 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYK 210 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC-------CCCCCCC
T ss_conf 27999999999999999971998667707962244677633267-------6786724
No 219
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.53 E-value=6.3e-14 Score=109.95 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=95.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99833899868899999868920-21058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKV-SIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~v-sivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
|.++|..|||||||+++|.+.+. .-+.|..+.. ...+..++..+.+.|++|-- .+...-.....++|
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~~PT~Gf~----~~~i~~~~~~l~~wDlgGq~--------~~R~~W~~Y~~~~~ 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQ--------NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCHH--------HHHHHHHHHHHCCC
T ss_conf 9999679998999999981699876535632774----69999899999998537528--------88656998711775
Q ss_pred HHCCCCHHHHHHHC-CHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHH--HC-CCCCCCCCCCCCCCCCHHH
Q ss_conf 10011000010000-0001223454--42872025787211010434578888641--00-1233431100013874267
Q gi|254780941|r 104 IVCLVVDSHRELKV-NIHDLLKEIA--KRSSRLILILNKIDCVKPERLLEQAEIAN--KL-VFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 104 iil~VvDa~~~~~~-~~~~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~~~~~~~--~~-~~~~~i~~ISAk~g~Gid~ 177 (311)
.++||||+++...- +..+.+..+. ..+.|++++.||.|+...-...+..+.+. .. ..-.-.+..||.+|+|+.+
T Consensus 70 gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w~iq~~s~~g~gl~~ 149 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPS 149 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf 89999956888899999999999970879986999986324336999999998669946379998899711047998589
Q ss_pred HHHHHHHHCCC
Q ss_conf 89999983662
Q gi|254780941|r 178 VLNYLCSTLPL 188 (311)
Q Consensus 178 L~~~L~~~lpe 188 (311)
-.++|.+.+.+
T Consensus 150 ~~~~l~~~~~~ 160 (164)
T cd04162 150 RMEAVKDLLSQ 160 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 220
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.9e-14 Score=109.71 Aligned_cols=158 Identities=23% Similarity=0.368 Sum_probs=113.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC--CCE--E-EE-CCC--CCCEEEEE-----EE------E--EEECCEEEEEEECCCCH
Q ss_conf 1899833899868899999868--920--2-10-588--88602127-----89------9--97399489999879840
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVG--AKV--S-IV-THK--VQTTRSIV-----RG------I--VSEKESQIVFLDTPGIF 81 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g--~~v--s-iv-S~k--~~TTr~~i-----~g------i--~~~~~~qiifvDTPG~~ 81 (311)
-.-|||-.|.|||+||.-.|+- .-+ | .| +.+ .+||-+.. +| + ..+.++.+.+.||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG-- 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG-- 90 (528)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC--
T ss_conf 403688568888511889999723034305501222577634227788887568558765787603884886147998--
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH--HHHHHH------
Q ss_conf 101235753210023455553210011000010000000122345442872025787211010434--578888------
Q gi|254780941|r 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAE------ 153 (311)
Q Consensus 82 ~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~--l~~~~~------ 153 (311)
++.+.+.+++++.-+|.++.|+||.+++.++...+++-++-++.|++..+||+|....+- ++..++
T Consensus 91 ------HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 91 ------HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred ------CCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf ------65432367899986410468986035866889999999850598469975023656688689999999985775
Q ss_pred -------------------------------------------------------------------HHHH---------
Q ss_conf -------------------------------------------------------------------6410---------
Q gi|254780941|r 154 -------------------------------------------------------------------IANK--------- 157 (311)
Q Consensus 154 -------------------------------------------------------------------~~~~--------- 157 (311)
....
T Consensus 165 ~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~ 244 (528)
T COG4108 165 CAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEA 244 (528)
T ss_pred EECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 03552445688564322350358799842677765443444457888677776244799999999999974133208898
Q ss_pred --CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf --0123343110001387426789999983662
Q gi|254780941|r 158 --LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 158 --~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
.....++|.-||+++.|++.+++.+.+.+|+
T Consensus 245 fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~ 277 (528)
T COG4108 245 FLAGELTPVFFGSALGNFGVDHFLDALVDWAPS 277 (528)
T ss_pred HHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 856960115703323115889999999963899
No 221
>KOG1144 consensus
Probab=99.50 E-value=1e-12 Score=102.18 Aligned_cols=222 Identities=22% Similarity=0.243 Sum_probs=135.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEE-----ECCCCCCEEEEEEEEE------------EECCEEEEEEECC
Q ss_conf 4368512189983389986889999986892021-----0588886021278999------------7399489999879
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSI-----VTHKVQTTRSIVRGIV------------SEKESQIVFLDTP 78 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsi-----vS~k~~TTr~~i~gi~------------~~~~~qiifvDTP 78 (311)
..++.||...+|+|....||+-|+..|-+.+|-- .+...+.|-.++..+. +..---+.++|||
T Consensus 469 ~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144 469 STENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred CHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 61323686378971112660578887620553224456600000541152677899999987502331378704896588
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH------HHH----
Q ss_conf 8401012357532100234555532100110000100000001223454428720257872110104------345----
Q gi|254780941|r 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP------ERL---- 148 (311)
Q Consensus 79 G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~------~~l---- 148 (311)
|. .+-. ..-.+...-||++++|+|..+++.++..+.++.|+..+.|+|++|||+|.+.. ..+
T Consensus 549 gh-EsFt-------nlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144 549 GH-ESFT-------NLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred CC-HHHH-------HHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHHHH
T ss_conf 72-5555-------566504334553777853111677420678998875489759861013444044248983199999
Q ss_pred ---------------HHHHHHHH-------------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ---------------78888641-------------00123343110001387426789999983662235689643343
Q gi|254780941|r 149 ---------------LEQAEIAN-------------KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 (311)
Q Consensus 149 ---------------~~~~~~~~-------------~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td 200 (311)
...+..+. ....+-.++|.||.+|+|+.+|+-+|.+...
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ------------- 687 (1064)
T KOG1144 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ------------- 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-------------
T ss_conf 8744789999999999999999971104434231467465588621221367880789999999999-------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEE--EECCCCCEEEECCCCHHHHHHHH
Q ss_conf 0256789987599999973004564204788533106677235899999--82798415487466588999999
Q gi|254780941|r 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY--VERPSQKKIMLGKNGQNIKTISL 272 (311)
Q Consensus 201 ~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~I~--v~k~sqk~IiiGk~G~~ik~I~~ 272 (311)
..+ + +++. +-+| +.+.|-+...-..-...|.+.+. +=+++-.-+++|-+|-.+-.|+-
T Consensus 688 k~m----~----~kl~--y~~e----v~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRa 747 (1064)
T KOG1144 688 KTM----V----EKLA--YVDE----VQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRA 747 (1064)
T ss_pred HHH----H----HHHH--HHHH----EEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEECCCCCCHHHHHHH
T ss_conf 999----9----8774--2401----004789987523777168999875655269879982799861688897
No 222
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.50 E-value=3.1e-14 Score=111.94 Aligned_cols=62 Identities=42% Similarity=0.584 Sum_probs=50.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC
Q ss_conf 51218998338998688999998689202105888860212789997399489999879840101
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~ 84 (311)
.++..|.++|.||||||||+|+|+|++.+.||+.|+||+....-.... . +.++||||+.-++
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~--i~LlDtPGii~~~ 191 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-G--IYLLDTPGIIPPK 191 (322)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCEEEECCC-C--EEEEECCCCCCCC
T ss_conf 556089998789764899999986205552379996204516897278-6--2897388807886
No 223
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=99.47 E-value=3e-14 Score=112.03 Aligned_cols=153 Identities=24% Similarity=0.348 Sum_probs=99.0
Q ss_pred CCCCCCHHHHHHHHHCCC-------EE---EECCCCCCEEEEE--------------EEE--------EEECCEEEEEEE
Q ss_conf 389986889999986892-------02---1058888602127--------------899--------973994899998
Q gi|254780941|r 29 GATNAGKSTLVNRFVGAK-------VS---IVTHKVQTTRSIV--------------RGI--------VSEKESQIVFLD 76 (311)
Q Consensus 29 G~pN~GKSTL~N~l~g~~-------vs---ivS~k~~TTr~~i--------------~gi--------~~~~~~qiifvD 76 (311)
|---=|||||+=+|+-.- ++ --|.+.||+-..+ .|| ...+.-.||+-|
T Consensus 7 GSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITIDVAYRYFsT~KRkFIvAD 86 (411)
T TIGR02034 7 GSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVAD 86 (411)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEC
T ss_conf 54458731022222555521689999998852255347887652341330677443248612133132577876178840
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHH-HHHHHHH-
Q ss_conf 79840101235753210023455553210011000010000000122345442872-02578721101043-4578888-
Q gi|254780941|r 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPE-RLLEQAE- 153 (311)
Q Consensus 77 TPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~-~l~~~~~- 153 (311)
||| |+...+..--....||+++++|||+++.-.+.....-...=.+++ +|+++|||||++-+ .+.+.++
T Consensus 87 TPG--------HEQYTRNMATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd~~vF~~I~~ 158 (411)
T TIGR02034 87 TPG--------HEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (411)
T ss_pred CCC--------CCCCCCCCCHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 855--------941544300001311246655421021345677999998860453899999701114765788999999
Q ss_pred ---HHHHCC-CCC--CCCCCCCCCCCCHHHHHHHHH-HHCCCCCCCCCCC
Q ss_conf ---641001-233--431100013874267899999-8366223568964
Q gi|254780941|r 154 ---IANKLV-FIE--KTFMVSATKGHGCDDVLNYLC-STLPLAPWVYSAD 196 (311)
Q Consensus 154 ---~~~~~~-~~~--~i~~ISAk~g~Gid~L~~~L~-~~lpe~~~~y~~~ 196 (311)
.+...+ ++. ..+|+||++|+|+ . +.-..-|||-=|.
T Consensus 159 ~y~~fa~~L~g~~~~~~iP~SAL~GdNv-------~y~~S~~MpWY~GPt 201 (411)
T TIGR02034 159 DYLAFAEQLAGVRDVTFIPLSALKGDNV-------VYSRSESMPWYSGPT 201 (411)
T ss_pred HHHHHHHHCCCCCEEEEEEEECCCCCCE-------EECCCCCCCCCCCCC
T ss_conf 9999998638983479987331368740-------225667888757880
No 224
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.46 E-value=8.8e-13 Score=102.57 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=110.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-----ECCCC----------CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 89983389986889999986892021-----05888----------8602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSI-----VTHKV----------QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsi-----vS~k~----------~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
+|||+-....||+||+.+|+.+-=+- |..+. +-|--+-...+..+++.|.++||||.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGH-------- 78 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGH-------- 78 (603)
T ss_pred EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCC--------
T ss_conf 068999844881028999987316544565201440376423443493898515246208838987658986--------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHH-------HHCC
Q ss_conf 53210023455553210011000010000000122345442872025787211010--43457888864-------1001
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEIA-------NKLV 159 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~~-------~~~~ 159 (311)
..+--.+.+.+.-+|.++++|||.++..++....+++....+.+.|+|+||+|... ++.+....-.+ .+.+
T Consensus 79 ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 79 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred CCCCCHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 77662545114323348999975558887314448999974998489996778999887899999999999819974557
Q ss_pred CCCCCCCCCCCCC----------CCHHHHHHHHHHHCCC
Q ss_conf 2334311000138----------7426789999983662
Q gi|254780941|r 160 FIEKTFMVSATKG----------HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 160 ~~~~i~~ISAk~g----------~Gid~L~~~L~~~lpe 188 (311)
.| .+++.||+.| .++..|.+.|.++.|.
T Consensus 159 dF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 159 DF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CC-EEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 87-079854147510158655555316899999975899
No 225
>KOG1491 consensus
Probab=99.46 E-value=3.3e-13 Score=105.31 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=69.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-----------------EEEEEEECCCCHHHCCC
Q ss_conf 8998338998688999998689202105888860212789997399-----------------48999987984010123
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-----------------SQIVFLDTPGIFNAKDS 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-----------------~qiifvDTPG~~~~~~~ 86 (311)
.++|||.||||||||+|+|++.++. +.+.|.||-++..+.+...+ .++.++|++|+.+..+.
T Consensus 22 kiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491 22 KIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCCEECCCCCEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 0257517987468899998607988-567874025634112226825889998852876612335789862123567645
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 57532100234555532100110000
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSH 112 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~ 112 (311)
++-+-...++.+..+|.++.||++.
T Consensus 101 -G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491 101 -GEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred -CCCCHHHHHHHHHHCCCEEEEEEEC
T ss_conf -7674077777655203116888741
No 226
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=4.4e-12 Score=98.06 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=98.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 2189983389986889999986892021058888602127899973994--89999879840101235753210023455
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
.--|.+||-++||||+|+++++...-. -...| |--+.-...+..++. .+-+.||.|- +.+........
T Consensus 13 ~~KiVlVGD~~VGKTsLl~~~~~~~F~-~~y~p-Tv~~~~~~~i~v~~~~v~L~lWDTAGq--------E~y~~lr~~yY 82 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVP-TVFENYTAGLETEEQRVELSLWDTSGS--------PYYDNVRPLCY 82 (232)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCC-CCCCC-CEEEEEEEEEEECCEEEEEEEEECCCC--------CCCCHHHHHHH
T ss_conf 889999998998999999999739899-98588-368888999999999999999838997--------01003679974
Q ss_pred HHHHHHCCCCHHHHHHHCC--HHHHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCC
Q ss_conf 5532100110000100000--0012234544--28720257872110104345-------------78888641001233
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN--IHDLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIE 162 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~--~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~ 162 (311)
.++|++++|.|.++..+-+ ....+.+++. .+.|+++|-||+|+-.+... .++...+.+..+..
T Consensus 83 ~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~Ak~iga~ 162 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 06878999996898799998999999999986899978999876021547577889975688875799999999974997
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHC
Q ss_conf 43110001387-4267899999836
Q gi|254780941|r 163 KTFMVSATKGH-GCDDVLNYLCSTL 186 (311)
Q Consensus 163 ~i~~ISAk~g~-Gid~L~~~L~~~l 186 (311)
..+.+||++|+ |++++.+......
T Consensus 163 ~Y~E~SA~tge~~v~~vF~~a~~~~ 187 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 8998756866625999999999999
No 227
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.44 E-value=1.4e-12 Score=101.29 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=91.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
.|+++|-++||||+|+++.+...-... .. ||-..-.-.+..++ ..+.+.||+|.... +.+..
T Consensus 2 KivllGd~~VGKTsl~~Rf~~~~F~~~-~~--pt~~~~~~~~~vdg~~~~l~i~DTaG~~~~-------------~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ES--PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-------------QFASW 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC-CC--CCCCEEEEEEEECCEEEEEEEEECCCCCCH-------------HHHCC
T ss_conf 999999699879999999980947874-44--664417999999999999999958998343-------------33214
Q ss_pred HHHHCCCCHHHHHHHC-CHHHHHHHHHH----CCCCCEEEEEECCCHHHH-H-H-HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3210011000010000-00012234544----287202578721101043-4-5-7888864100123343110001387
Q gi|254780941|r 102 ADIVCLVVDSHRELKV-NIHDLLKEIAK----RSSRLILILNKIDCVKPE-R-L-LEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 102 aDiil~VvDa~~~~~~-~~~~il~~l~~----~~~p~IiVlNKiDlv~~~-~-l-~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
+|.+++|.|.++..+- ....+++++.+ ...|+++|.||.|+-..+ + + .+..+.+.........|.+||++|.
T Consensus 66 ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~~~~f~EtSAk~~~ 145 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99899999889888999999999999985597899689998770036577614799999999985699889990179995
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
|++++.+.+++.+
T Consensus 146 NV~~~F~~~~~~i 158 (158)
T cd04103 146 NVERVFQEAAQKI 158 (158)
T ss_pred CHHHHHHHHHHHC
T ss_conf 9899999999639
No 228
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.43 E-value=3e-12 Score=99.15 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-|+++|-++||||+|+++++...-. .....|.-+.....+..++ ..+-+.||+|-- .+.........+
T Consensus 7 KivlvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe--------~f~~l~~~~y~~ 76 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP--------YYDNVRPLSYPD 76 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEEECCCCH--------HCCCCCHHHHCC
T ss_conf 9999999998999999999839999--986873532268999999999999999689862--------012212555127
Q ss_pred HHHHCCCCHHHHHHHCCH--HHHHHHHHH--CCCCCEEEEEECCCHHHHH-------------HHHHHHHHHHCCCCCCC
Q ss_conf 321001100001000000--012234544--2872025787211010434-------------57888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNI--HDLLKEIAK--RSSRLILILNKIDCVKPER-------------LLEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~--~~il~~l~~--~~~p~IiVlNKiDlv~~~~-------------l~~~~~~~~~~~~~~~i 164 (311)
+|++++|.|.++..+-.. .....+++. .+.|+++|-||+|+-.+.. ..+..+.+.+..+....
T Consensus 77 ~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~~~y 156 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899996489778899999999999998687998899961710124414566776456778699999999997699799
Q ss_pred CCCCCCCCC-CHHHHHHHHHHH
Q ss_conf 110001387-426789999983
Q gi|254780941|r 165 FMVSATKGH-GCDDVLNYLCST 185 (311)
Q Consensus 165 ~~ISAk~g~-Gid~L~~~L~~~ 185 (311)
+.+||+++. |++++.+.....
T Consensus 157 ~EtSAk~~~n~V~e~F~~a~~a 178 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EECCCCCCCCCHHHHHHHHHHH
T ss_conf 9917078995989999999999
No 229
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.43 E-value=4.5e-12 Score=97.96 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9983389986889999986892021058888602127899973994--89999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|.++|-++||||+|+.+++...-. ....| |.-+.-...+..++. .+-+.||+|-- .+.........++
T Consensus 4 iVlvGD~~VGKTsLl~~f~~~~F~-~~y~p-Ti~~~~~~~~~vd~~~v~L~iWDTAGqE--------~y~~lr~~yyr~a 73 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDAYP-GSYVP-TVFENYTASFEIDKRRIELNMWDTSGSS--------YYDNVRPLAYPDS 73 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCC-CEEEEEEEEEEECCEEEEEEEECCCCCC--------HHHHHHHHHCCCC
T ss_conf 999898998989999999639999-98478-4587789999999999999997688850--------3455678750369
Q ss_pred HHHCCCCHHHHHHHCCH--HHHHHHHHH--CCCCCEEEEEECCCHHHHHHH-------------HHHHHHHHCCCCCCCC
Q ss_conf 21001100001000000--012234544--287202578721101043457-------------8888641001233431
Q gi|254780941|r 103 DIVCLVVDSHRELKVNI--HDLLKEIAK--RSSRLILILNKIDCVKPERLL-------------EQAEIANKLVFIEKTF 165 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~--~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~-------------~~~~~~~~~~~~~~i~ 165 (311)
|++++|.|.++..+-+. ...+.++.. .+.|+|+|-||+|+-.+...+ +..+.+.+..+....+
T Consensus 74 ~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga~~y~ 153 (222)
T cd04173 74 DAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 89999983897788999999999999985899978999587424568788999985578887899999999976998899
Q ss_pred CCCCCCCC-CHHHHHHHHHHH
Q ss_conf 10001387-426789999983
Q gi|254780941|r 166 MVSATKGH-GCDDVLNYLCST 185 (311)
Q Consensus 166 ~ISAk~g~-Gid~L~~~L~~~ 185 (311)
.+||++++ |++++.+.....
T Consensus 154 EcSAk~~~n~V~evF~~a~~~ 174 (222)
T cd04173 154 ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred ECCCCCCCCCHHHHHHHHHHH
T ss_conf 888486874989999999999
No 230
>KOG1487 consensus
Probab=99.42 E-value=3.6e-13 Score=105.05 Aligned_cols=155 Identities=28% Similarity=0.376 Sum_probs=110.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
.|.++|.|.+|||||++.|+|.. |.|.+.-+||...+.|+...+...+-+.|.||+++..+. ++-.-+.+......|+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakd-gkgrg~qviavartcn 138 (358)
T KOG1487 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD-GKGRGKQVIAVARTCN 138 (358)
T ss_pred EEEEEECCCCCHHHHHHHHCCCC-CCCCCCCCEEEEEECCEEECCCCCEEEECCCCHHCCCCC-CCCCCCEEEEEEECCC
T ss_conf 55378537666243322301888-765543322689706667404562343048540014646-7887607888830165
Q ss_pred HHCCCCHHHHHHHCC--------------------------------------HHH----HHHHHH--------------
Q ss_conf 100110000100000--------------------------------------001----223454--------------
Q gi|254780941|r 104 IVCLVVDSHRELKVN--------------------------------------IHD----LLKEIA-------------- 127 (311)
Q Consensus 104 iil~VvDa~~~~~~~--------------------------------------~~~----il~~l~-------------- 127 (311)
+++.|.|+-++.... +.+ ++.+.+
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHEEEECCCCH
T ss_conf 89987110675217889987631036661488997630124447430013200278899998876431023056357642
Q ss_pred ----------HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf ----------428720257872110104345788886410012334311000138742678999998366
Q gi|254780941|r 128 ----------KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 128 ----------~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
....|.+.++||+|-++-+++ .-.+..-..+|+||-++.|+|+|++.+.++|.
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISiEEL-------dii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487 219 DDLIDVVEGNRIYVPCIYVLNKIDSISIEEL-------DIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred HHHHHHHCCCCEEEEEEEEECCCCEEEEECC-------CEEEECCCEEECCCCCCCCHHHHHHHHHHCCH
T ss_conf 2243220057315665556222350121013-------20110563245245666556788988730600
No 231
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.3e-13 Score=103.49 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=107.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-----------EEEECCCCCCEEEEE------EEEEEEC-----------CEEEE
Q ss_conf 2189983389986889999986892-----------021058888602127------8999739-----------94899
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAK-----------VSIVTHKVQTTRSIV------RGIVSEK-----------ESQIV 73 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~-----------vsivS~k~~TTr~~i------~gi~~~~-----------~~qii 73 (311)
.-+|+.+|....|||||..||.|-. ++|---.++++-..- ....+.+ -..+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred CEEEEEEEECCCCHHHHEEHHHCEEEECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 14762342014662411003313343020688756847984025574575777788766234787777899730799999
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-CCHHHHHHHHHHCCC-CCEEEEEECCCHHHHHHHHH
Q ss_conf 9987984010123575321002345555321001100001000-000012234544287-20257872110104345788
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAKRSS-RLILILNKIDCVKPERLLEQ 151 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~-~~~~~il~~l~~~~~-p~IiVlNKiDlv~~~~l~~~ 151 (311)
|+|.|| ++.++....+...-.|..++|+.|++..- ++..+.+-.+.-.+. .+++|=||+|++++++.++.
T Consensus 90 fVDaPG--------He~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 90 FVDAPG--------HETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEECCC--------HHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEECHHHHHHH
T ss_conf 740796--------699999886023442153899953898989731877887766265339999523011159998887
Q ss_pred HHHHHHCCC-----CCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 886410012-----334311000138742678999998366223
Q gi|254780941|r 152 AEIANKLVF-----IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 152 ~~~~~~~~~-----~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~ 190 (311)
.+.+.++.. ...|+||||.++.|||.|.++|.++.|.-+
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHHCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 99999986263347995443256430587999999998689986
No 232
>KOG0092 consensus
Probab=99.41 E-value=2.5e-12 Score=99.61 Aligned_cols=163 Identities=23% Similarity=0.250 Sum_probs=104.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 121899833899868899999868920210588886021278-9997399--4899998798401012357532100234
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
+..-|.++|-.|||||||+=+....+...- ...|+--.-. -.+..++ ..|.+.||.|.-+ .+ ..+--
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER-----y~---slapM 73 (200)
T KOG0092 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER-----YH---SLAPM 73 (200)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHCCCCCC--CCCCCCEEEEEEEEEECCCEEEEEEEECCCCCC-----CC---CCCCC
T ss_conf 257999986787770241122232756632--345400078999998489578999987677300-----33---55610
Q ss_pred HHHHHHHHCCCCHHHHHHH-CCHHHHHHHHHHCCCC-C--EEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5555321001100001000-0000122345442872-0--257872110104345-788886410012334311000138
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELK-VNIHDLLKEIAKRSSR-L--ILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~-~~~~~il~~l~~~~~p-~--IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
...+|+.+|+|.|+++..+ ......++++.....| + .+|-||+|+..+..+ .+..+.+.+..+. -.|..||++|
T Consensus 74 YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAKTg 152 (200)
T KOG0092 74 YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAKTG 152 (200)
T ss_pred EECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 104776799998556678999999999999862798759998325165410345468888989985498-7999852556
Q ss_pred CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7426789999983662235689
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLAPWVYS 194 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~~~~y~ 194 (311)
.|++++...|.+.+|+....-.
T Consensus 153 ~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092 153 ENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred CCHHHHHHHHHHHCCCCCCCCC
T ss_conf 5899999999975667662234
No 233
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=99.40 E-value=3.2e-13 Score=105.43 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=70.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCE------------------EEEEEECCCC
Q ss_conf 8512189983389986889999986892021058888602127899973994------------------8999987984
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES------------------QIVFLDTPGI 80 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~------------------qiifvDTPG~ 80 (311)
|.+| +|||.||||||||+|||++.+++=..+.|..|=++-.|+++..+- .+.|+|-+|+
T Consensus 2 nl~a---GIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGL 78 (390)
T TIGR00092 2 NLKA---GIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGL 78 (390)
T ss_pred CCCC---CCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCC
T ss_conf 8876---5300687605579999982667776688876516764446258853334776406420411404899862234
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 010123575321002345555321001100
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvD 110 (311)
.++..+ ++-+-...+..+.++|.|++||-
T Consensus 79 vkGAS~-GeGLGN~FLanIReVd~I~hVVR 107 (390)
T TIGR00092 79 VKGASK-GEGLGNQFLANIREVDAICHVVR 107 (390)
T ss_pred CCCCCC-CCCCHHHHHHCCCCCCCCEEEEE
T ss_conf 100015-78723344310320331047886
No 234
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=99.20 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=113.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEE-------CCCC--CCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCC
Q ss_conf 21899833899868899999868920210-------5888--860212789997399-4899998798401012357532
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIV-------THKV--QTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLM 91 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsiv-------S~k~--~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~ 91 (311)
.-.|+++|.-+|||+|++.++.-+..-+| |.+. +||.-.-.|.+..++ +.+.|+||||.-+ -++|
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-----F~fm 84 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-----FKFM 84 (187)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCCHH-----HHHH
T ss_conf 10699984436640667887653456201033555544664550686324113775861689965897077-----8989
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 100234555532100110000100000001223454428-7202578721101043457888864100123343110001
Q gi|254780941|r 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 92 ~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~-~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
.+.. .++++.+++++|+++..+.....+++.+...+ .|+++..||.|+.+...-.+..+.+.......++++++|.
T Consensus 85 ~~~l---~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 85 WEIL---SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHHH---HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 9987---4876428999956999646789999988520688789995042257789989999999711279864434424
Q ss_pred CCCCHHHHHHHHHHH-CC
Q ss_conf 387426789999983-66
Q gi|254780941|r 171 KGHGCDDVLNYLCST-LP 187 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~-lp 187 (311)
.++|..+.++.+..+ ++
T Consensus 162 e~~~~~~~L~~ll~~~~~ 179 (187)
T COG2229 162 EGEGARDQLDVLLLKDLL 179 (187)
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 634178999998730356
No 235
>KOG2486 consensus
Probab=99.39 E-value=4.8e-13 Score=104.29 Aligned_cols=161 Identities=20% Similarity=0.147 Sum_probs=106.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEE-EC-CCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC--CCCCCCCCHHHHH
Q ss_conf 189983389986889999986892021-05-8888602127899973994899998798401012--3575321002345
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSI-VT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD--SYHKLMIRLSWST 98 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsi-vS-~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~--~l~~~~~~~~~~~ 98 (311)
.-++++|++|||||||+|.++..+... ++ +|+|-|+.... ..-+..+..+|.||+-.... .+.+-..+.+.+.
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486 137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH---FHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE---EECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 526662477622788876543214556403788765113200---12055489984688654567855741476757888
Q ss_pred H---HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH------HHHHHHHHHHCC--CCCCC---
Q ss_conf 5---553210011000010000000122345442872025787211010434------578888641001--23343---
Q gi|254780941|r 99 I---KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER------LLEQAEIANKLV--FIEKT--- 164 (311)
Q Consensus 99 l---~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~------l~~~~~~~~~~~--~~~~i--- 164 (311)
+ +.-=-+++++|++.++.+.|...++.+.+.+.|+.+|+||+|+.++-. .+.......... .+..-
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw 293 (320)
T KOG2486 214 LLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPW 293 (320)
T ss_pred HHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHCCCCCEECCCCC
T ss_conf 87265331156663036788998769998875249973886302445553022355754001210200150004115870
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 1100013874267899999836
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~l 186 (311)
+++|+.++.|++.|+-.+.+..
T Consensus 294 ~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486 294 IYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred EEEECCCCCCCEEEEEEHHHHH
T ss_conf 1320434257200110166442
No 236
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.38 E-value=7.5e-12 Score=96.54 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=106.2
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEE--CCCCCCEEEEEEEE---------------E-------
Q ss_conf 4368512189983389986889999986------8920210--58888602127899---------------9-------
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIV--THKVQTTRSIVRGI---------------V------- 65 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsiv--S~k~~TTr~~i~gi---------------~------- 65 (311)
.+..-+|-.|+|.|+|+||||||+++|. |.+|+.. -|-..-|.-.++|- .
T Consensus 23 ~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~ 102 (267)
T pfam03308 23 MPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGA 102 (267)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 74359955998768998879999999999999689868999978999888863001077776505899858864577888
Q ss_pred ---------------EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
Q ss_conf ---------------73994899998798401012357532100234555532100110000100000001223454428
Q gi|254780941|r 66 ---------------SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 (311)
Q Consensus 66 ---------------~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~ 130 (311)
..-++.++|+-|.|+-.+. ....+-+|.+++|.-..- .++ .+.++ ..-..
T Consensus 103 lGGls~~t~~~i~lleaaGfD~IivETVGVGQsE-----------~~v~~~aD~~llv~~Pg~--GDe-iQ~iK-aGImE 167 (267)
T pfam03308 103 LGGLSRATREAILLLDAAGFDVIIIETVGVGQSE-----------VDIANMADTFVLVTIPGG--GDD-LQGIK-AGLME 167 (267)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-----------HHHHHHCCEEEEEECCCC--CHH-HHHHH-HHHHH
T ss_conf 8871476999999999779999999247777530-----------355541576899955887--608-88987-53765
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHCC-----CC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---C
Q ss_conf 72025787211010434578888641001-----23-343110001387426789999983662235689643343---0
Q gi|254780941|r 131 SRLILILNKIDCVKPERLLEQAEIANKLV-----FI-EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD---L 201 (311)
Q Consensus 131 ~p~IiVlNKiDlv~~~~l~~~~~~~~~~~-----~~-~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td---~ 201 (311)
..=++|+||+|+-..+......+..-... .| .+|+.+||.+|.|+++|.+.|.++.. |.-..+.+.. +
T Consensus 168 iaDi~vVNKaD~~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~---~l~~sG~l~~rR~~ 244 (267)
T pfam03308 168 IADIYVVNKADLPGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHRE---FLTATGLLAARRRA 244 (267)
T ss_pred HCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HHHHCCHHHHHHHH
T ss_conf 354899966764769999999999985179877899999899874788999999999999999---99978869999999
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 25678998759999997300
Q gi|254780941|r 202 PMFHFTAEITREKLFLHLHK 221 (311)
Q Consensus 202 ~~~~~i~EiIREki~~~l~~ 221 (311)
-.+.++.++|++.++..++.
T Consensus 245 q~~~w~~~~I~~~Ll~~l~~ 264 (267)
T pfam03308 245 RIEEWLKTLVEDDLLKRVKA 264 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999974
No 237
>KOG0073 consensus
Probab=99.38 E-value=6.1e-12 Score=97.13 Aligned_cols=154 Identities=23% Similarity=0.339 Sum_probs=105.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH-HHH
Q ss_conf 1218998338998688999998689202105888860212789997399489999879840101235753210023-455
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW-STI 99 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~-~~l 99 (311)
|--.|-|+|.-||||+|+++++.|.....++|.-+ .+| -.+..+++++.+.|.-|- +.+ +.+| +..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g---f~I-ktl~~~~~~L~iwDvGGq--------~~l-r~~W~nYf 81 (185)
T KOG0073 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG---FQI-KTLEYKGYTLNIWDVGGQ--------KTL-RSYWKNYF 81 (185)
T ss_pred HEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC---EEE-EEEEECCEEEEEEECCCC--------CHH-HHHHHHHH
T ss_conf 34479999127898244898853898223287211---355-787742428999974885--------336-87887766
Q ss_pred HHHHHHCCCCHHHHHHHCC-----HHHHHHHHHHCCCCCEEEEEECCCH---HHHHHHHH--HHHHHHCCCCCCCCCCCC
Q ss_conf 5532100110000100000-----0012234544287202578721101---04345788--886410012334311000
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN-----IHDLLKEIAKRSSRLILILNKIDCV---KPERLLEQ--AEIANKLVFIEKTFMVSA 169 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~-----~~~il~~l~~~~~p~IiVlNKiDlv---~~~~l~~~--~~~~~~~~~~~~i~~ISA 169 (311)
+.+|.++||+|+++...-+ ..+++..-+-.+.|++++.||.|+. +.+.+.+. .+.+.+... .+++-+||
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~ 160 (185)
T KOG0073 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSA 160 (185)
T ss_pred HCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCC-CEEEEEEC
T ss_conf 50472899997720888999999999997565434884399973476855247878887647787613367-22899854
Q ss_pred CCCCCHHHHHHHHHHHCCC
Q ss_conf 1387426789999983662
Q gi|254780941|r 170 TKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 170 k~g~Gid~L~~~L~~~lpe 188 (311)
.+|+++.+=.++|+..+-+
T Consensus 161 ~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073 161 VTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 5456478888999999998
No 238
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=99.36 E-value=2.4e-12 Score=99.71 Aligned_cols=161 Identities=22% Similarity=0.277 Sum_probs=110.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC----CEEEECCCCCCEEEEEEEEEEECCEE-EEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 18998338998688999998689----20210588886021278999739948-99998798401012357532100234
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA----KVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~----~vsivS~k~~TTr~~i~gi~~~~~~q-iifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
..||+.|-+++||||++|+|-|- .-|+-+....||..+. .+.++.+. ++|+|.||+..+.-..+.++.+.
T Consensus 36 lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvvetT~~~~--~Y~hp~~pnV~lwDLPG~gt~~f~~~~Yl~~~--- 110 (375)
T pfam05049 36 LKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVETTMKRT--PYSHPHFPNVVLWDLPGLGATNFTVETYLEEM--- 110 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC--CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHC---
T ss_conf 4799854899867899998747898777768768766326755--67899999807962899998998989999874---
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCC------------HHHHHHHHHHHHH-----HHC-C
Q ss_conf 555532100110000100000001223454428720257872110------------1043457888864-----100-1
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC------------VKPERLLEQAEIA-----NKL-V 159 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDl------------v~~~~l~~~~~~~-----~~~-~ 159 (311)
.....|+.+.+. +..+...+..+...+.++++++.+|-+|+|. .++++++..+... .+. .
T Consensus 111 ~f~~yDfFiiis--s~rf~~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~IR~~c~~~L~k~gv 188 (375)
T pfam05049 111 KFSEYDFFIIIS--SERFSLNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQNIQDNCRNNLQKEGV 188 (375)
T ss_pred CCCCCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 856477899996--775432018999999983894799986236760657625899999899999999999999987588
Q ss_pred CCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCC
Q ss_conf 23343110001--38742678999998366223
Q gi|254780941|r 160 FIEKTFMVSAT--KGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 160 ~~~~i~~ISAk--~g~Gid~L~~~L~~~lpe~~ 190 (311)
....||.||.. ..+....|.+.+.+-||...
T Consensus 189 ~eP~VFLvSnfdl~~yDFp~L~~TL~~eLP~hK 221 (375)
T pfam05049 189 KEPPIFLVSNLDPSHYDFPKLRDTLLKDLPIIK 221 (375)
T ss_pred CCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 899789981788132681899999998736867
No 239
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=4.4e-12 Score=98.06 Aligned_cols=121 Identities=19% Similarity=0.287 Sum_probs=84.4
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCC-CE-EE----------EEE-----EE--EEECCEEEEEE
Q ss_conf 24368512189983389986889999986892021058888-60-21----------278-----99--97399489999
Q gi|254780941|r 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TT-RS----------IVR-----GI--VSEKESQIVFL 75 (311)
Q Consensus 15 ~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~-TT-r~----------~i~-----gi--~~~~~~qiifv 75 (311)
+|.+--+-=+|+|+|.-.+||+||.-+|+-..=.|-....+ +| .| .|. .. ....++.|.|+
T Consensus 13 ~m~~pe~IRNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlI 92 (730)
T PRK07560 13 LMRNPEQIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLI 92 (730)
T ss_pred HHHCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEE
T ss_conf 86187635289999379989899999999964998653479864178859999729857521102898756983789998
Q ss_pred ECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 87984010123575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 76 DTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
||||..+ +...+.+++.-+|.+++|+||..+...+...++.+..+.+.|.++++||+|..
T Consensus 93 DTPGh~D--------F~~Ev~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~ 152 (730)
T PRK07560 93 DTPGHVD--------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRL 152 (730)
T ss_pred CCCCCCH--------HHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 1969730--------59999999988587899997898877318999999987799979998686623
No 240
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=99.33 E-value=2.1e-11 Score=93.67 Aligned_cols=188 Identities=15% Similarity=0.205 Sum_probs=98.2
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHC------CCEEE-----ECCCCC------------------------CEEEE
Q ss_conf 43685121899833899868899999868------92021-----058888------------------------60212
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVG------AKVSI-----VTHKVQ------------------------TTRSI 60 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g------~~vsi-----vS~k~~------------------------TTr~~ 60 (311)
.+..-++-.|+|.|+|+||||||+++|.. .+|+. .|+..+ -||..
T Consensus 43 ~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~ 122 (325)
T PRK09435 43 LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGT 122 (325)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 30179825997427999868899999999999679858999978999988861010388887614799848840677888
Q ss_pred EEEEE----------EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 78999----------73994899998798401012357532100234555532100110000100000001223454428
Q gi|254780941|r 61 VRGIV----------SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 (311)
Q Consensus 61 i~gi~----------~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~ 130 (311)
.-|+- .--++.++|+-|-|.-.+ -.....-+|.+++|.-... .+..+-+ + ..-..
T Consensus 123 lgg~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~-----------e~~v~~~~d~~~~~~~p~~--GD~~Q~~-K-~GImE 187 (325)
T PRK09435 123 LGGVARKTRETMLLCEAAGFDVILVETVGVGQS-----------ETAVAGMVDFFLLLQLPGA--GDELQGI-K-KGIME 187 (325)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHH-----------HHHHHHHCCEEEEEECCCC--CCHHHHH-H-HHHHH
T ss_conf 677335499999999977999899970677714-----------8899874266888835887--6088998-8-65775
Q ss_pred CCCEEEEEECCCHH---HHHHHHHHHHHHHC-----CCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-
Q ss_conf 72025787211010---43457888864100-----123-343110001387426789999983662235689643343-
Q gi|254780941|r 131 SRLILILNKIDCVK---PERLLEQAEIANKL-----VFI-EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD- 200 (311)
Q Consensus 131 ~p~IiVlNKiDlv~---~~~l~~~~~~~~~~-----~~~-~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td- 200 (311)
..=++|+||.|.-. -+.........-.. .+| .+|+.+||.+|.|+++|.+.|.++.. |.-..+.+..
T Consensus 188 iaDi~vVNKaDgd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~~~I~~h~~---~l~~sG~l~~r 264 (325)
T PRK09435 188 LADLIVINKADGDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELWQAIEDHRA---ALTASGEFAAR 264 (325)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH---HHHHCCHHHHH
T ss_conf 042689977675565899999999999986078878999999899981589987999999999999---99978869999
Q ss_pred --CHHHHHHHHHHHHHHHHHHHC
Q ss_conf --025678998759999997300
Q gi|254780941|r 201 --LPMFHFTAEITREKLFLHLHK 221 (311)
Q Consensus 201 --~~~~~~i~EiIREki~~~l~~ 221 (311)
+-.+.+..+++|+.++..+.+
T Consensus 265 R~~Q~~~wm~~~I~e~L~~~~~~ 287 (325)
T PRK09435 265 RREQQVEWMWEMVEEGLLARLFA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999985
No 241
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=99.33 E-value=5.5e-12 Score=97.43 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=109.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCH----HHHH
Q ss_conf 8998338998688999998689202105888-8602127899973994899998798401012357532100----2345
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRL----SWST 98 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~-~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~----~~~~ 98 (311)
.|+++|++++|||+..|.|+|+++...+.-+ ..|+.-..+....++.++.++||||+.+.... .+...+. +.-+
T Consensus 2 rivLlGktG~GKSstgNtILG~~~F~s~~~~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~-~~~~~~ei~~~~~l~ 80 (200)
T pfam04548 2 RIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVS-NDFISKEIIRCLLLA 80 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCC-HHHHHHHHHHHHHHC
T ss_conf 8999799998436557661797533578988887413689999989968999978663576778-699999999999855
Q ss_pred HHHHHHHCCCCHHHHHHHCCHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHHH-----HHHCCCCCCCCCCC
Q ss_conf 555321001100001000000012234544-----28720257872110104345788886-----41001233431100
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAEI-----ANKLVFIEKTFMVS 168 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~~-----~~~~~~~~~i~~IS 168 (311)
-.+.+++|+|++..+ ++..+...++.+.+ .-...|++++-.|.+..+.+...+.. +.+.... --.
T Consensus 81 ~pGpHa~LLVi~~~r-fT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L~~~si~~~i~~~~~~~Lq~li~~----~~~ 155 (200)
T pfam04548 81 EPGPHAVLLVLSLGR-FTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDSLDDYLSDGCPEFLKEVLRT----ADG 155 (200)
T ss_pred CCCCCEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCCCCHHHHHHHCCHHHHHHHHHH----CCC
T ss_conf 899857999986688-888999999999999757868009999978021499979999872273999999987----788
Q ss_pred CCCCCCHHHHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 0138742678999998366223-56896433
Q gi|254780941|r 169 ATKGHGCDDVLNYLCSTLPLAP-WVYSADQI 198 (311)
Q Consensus 169 Ak~g~Gid~L~~~L~~~lpe~~-~~y~~~~~ 198 (311)
..+...+.+|++.|-+.+.++. ++|..+++
T Consensus 156 ~~~~~QV~eLL~kIe~mv~eN~g~~ytne~~ 186 (200)
T pfam04548 156 EEKEEQVQQLLALVEAIVKENGGKPYTNDLY 186 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 5457999999999999999749978776889
No 242
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=99.32 E-value=5.4e-12 Score=97.48 Aligned_cols=156 Identities=22% Similarity=0.382 Sum_probs=109.9
Q ss_pred EEEECCCCCCHHHHHHHHH--CCCE---EEEC---CCCCCEEE-----EEEE------E--EEECCEEEEEEECCCCHHH
Q ss_conf 9983389986889999986--8920---2105---88886021-----2789------9--9739948999987984010
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFV--GAKV---SIVT---HKVQTTRS-----IVRG------I--VSEKESQIVFLDTPGIFNA 83 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~--g~~v---sivS---~k~~TTr~-----~i~g------i--~~~~~~qiifvDTPG~~~~ 83 (311)
-|||-.|.|||+||.-.++ |.-+ -.|- +..+.|-+ ..+| + .-+.++=+-+.||||
T Consensus 14 FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~~~l~NLLDTPG---- 89 (530)
T TIGR00503 14 FAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYRDCLVNLLDTPG---- 89 (530)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCC----
T ss_conf 4366168887424678888742566522441220012212213788750588144412774145774562036858----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH--HHHHHHH--------
Q ss_conf 123575321002345555321001100001000000012234544287202578721101043--4578888--------
Q gi|254780941|r 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE--RLLEQAE-------- 153 (311)
Q Consensus 84 ~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~--~l~~~~~-------- 153 (311)
|+-+.+-+++++.-+|-++.||||.++.......+++-.+-++.|++.-+||.|.-..+ +++..++
T Consensus 90 ----H~DFSEDTYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR~~~~P~ELlDEvE~~L~~~~~ 165 (530)
T TIGR00503 90 ----HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDRDIRDPLELLDEVENELKINCA 165 (530)
T ss_pred ----CCCCCCHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf ----8876404679999851230011112561234244542010004744335232065435537888888877064113
Q ss_pred ------------------------------------------------------------------HHH-----------
Q ss_conf ------------------------------------------------------------------641-----------
Q gi|254780941|r 154 ------------------------------------------------------------------IAN----------- 156 (311)
Q Consensus 154 ------------------------------------------------------------------~~~----------- 156 (311)
...
T Consensus 166 ~~~~PIG~G~~F~GVY~~~~~~~yLy~r~G~~~~~~~~~~~~~L~~P~L~~~~G~D~~~~l~dELELv~~A~~EFd~~~~ 245 (530)
T TIGR00503 166 PITYPIGCGKLFKGVYHLLKDEIYLYQRSGTGGTIKAVRVVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAF 245 (530)
T ss_pred EEECCCCCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43056578843113554301406676305888416677776326880156776578999998899999863024568998
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 00123343110001387426789999983662
Q gi|254780941|r 157 KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 157 ~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
......+||+=||..+.|++.+++.+.+++|.
T Consensus 246 ~~GE~TPVFFG~Al~NFGV~~~L~~l~~~A~~ 277 (530)
T TIGR00503 246 LGGELTPVFFGTALGNFGVDHFLDGLLQYAPK 277 (530)
T ss_pred HCCCCCCEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 53864631110001010089999999986078
No 243
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.32 E-value=2.3e-12 Score=99.82 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHH----HHHHHHH---HHCCCCCCCCCCCCCCCCC
Q ss_conf 32100110000100000001223454428720257872110104345----7888864---1001233431100013874
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERL----LEQAEIA---NKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l----~~~~~~~---~~~~~~~~i~~ISAk~g~G 174 (311)
.-+|++|+|+.+.......++.... .+.|+++|+||+|++.++.- ....... ........++.+||++|.|
T Consensus 35 ~~lVv~VvDi~Df~~S~~~~l~~~~--~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvSa~~~~g 112 (190)
T cd01855 35 KALVVHVVDIFDFPGSLIPRLRLFG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWG 112 (190)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHC--CCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 8459999754357644465579861--79868999981551788765888898999997501599843179976657869
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 26789999983662235689643343025678998759
Q gi|254780941|r 175 CDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITR 212 (311)
Q Consensus 175 id~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIR 212 (311)
+++|.+.|.++...+...|=-+. |+--.-.++.-+++
T Consensus 113 i~~L~~~i~~~~~~~~~vyvvG~-~NvGKSTLiN~Ll~ 149 (190)
T cd01855 113 VEELINAIKKLAKKGGDVYVVGA-TNVGKSTLINALLK 149 (190)
T ss_pred HHHHHHHHHHHHCCCCCEEEECC-CCCCHHHHHHHHHH
T ss_conf 89999999997466985799805-87546799999863
No 244
>KOG0448 consensus
Probab=99.31 E-value=5.3e-11 Score=91.07 Aligned_cols=145 Identities=25% Similarity=0.342 Sum_probs=93.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE--------------------------------------E--
Q ss_conf 121899833899868899999868920210588886021--------------------------------------2--
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--------------------------------------I-- 60 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~--------------------------------------~-- 60 (311)
++-.|+|.|++|+||||++||++.+++-+ +..-+||-- +
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 13479995787776899999999872076-66655312346631467731155168873432188877778751733003
Q ss_pred ----EEEEEEECC-E-----EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
Q ss_conf ----789997399-4-----899998798401012357532100234555532100110000100000001223454428
Q gi|254780941|r 61 ----VRGIVSEKE-S-----QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 (311)
Q Consensus 61 ----i~gi~~~~~-~-----qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~ 130 (311)
..-|+-.++ + .++++|.||+.- ......++.+...++|+++||+.|....+....+++......+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~-----~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~K 261 (749)
T KOG0448 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDV-----DSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEK 261 (749)
T ss_pred CCCEEEEEEECCCCCHHHHCCCEEECCCCCCC-----CHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 76506899942863213305501205888888-----6024599997644077589996176386898999999854048
Q ss_pred CCCEEEEEECCCHHH-----HHHHHHHHHHH---HCCCCCCCCCCCCCC
Q ss_conf 720257872110104-----34578888641---001233431100013
Q gi|254780941|r 131 SRLILILNKIDCVKP-----ERLLEQAEIAN---KLVFIEKTFMVSATK 171 (311)
Q Consensus 131 ~p~IiVlNKiDlv~~-----~~l~~~~~~~~---~~~~~~~i~~ISAk~ 171 (311)
..++++.||.|.... +.+..++..+. ..-..+.+|.|||+.
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCEEEEECHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCC
T ss_conf 8479996401220263778999999887517433666367369984531
No 245
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.30 E-value=7e-12 Score=96.75 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=94.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEE------ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf 189983389986889999986892021------05888860212789997399489999879840101235753210023
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSI------VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW 96 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsi------vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~ 96 (311)
..|+++|.+|||||||+|++.+..... ++..+.+++... ....++.++||||.-+-+. ...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~Dt~gq~~~~~--------~~~ 72 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-----RRNIKLQLWDTAGQEEYRS--------LRP 72 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECC-----CCCEEEEEEECCCHHHHHH--------HHH
T ss_conf 799999999998899999996476765567614540432036226-----6600267676798699999--------887
Q ss_pred HHHHHHHHHCCCCHHHH--HHHCCHHHHHHHHHH---CCCCCEEEEEECCCHHHHHHHHH-------------HHHHHHC
Q ss_conf 45555321001100001--000000012234544---28720257872110104345788-------------8864100
Q gi|254780941|r 97 STIKHADIVCLVVDSHR--ELKVNIHDLLKEIAK---RSSRLILILNKIDCVKPERLLEQ-------------AEIANKL 158 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~--~~~~~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l~~~-------------~~~~~~~ 158 (311)
....+++.+++++|.+. ............+.. ...|+++|.||+|+......... .......
T Consensus 73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_conf 50438978999997620565788999999999874668867999697610554301367887753245300022234442
Q ss_pred C--CCCCCCCCCCC--CCCCHHHHHHHHHHHCCCC
Q ss_conf 1--23343110001--3874267899999836622
Q gi|254780941|r 159 V--FIEKTFMVSAT--KGHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 159 ~--~~~~i~~ISAk--~g~Gid~L~~~L~~~lpe~ 189 (311)
. .....+.+||+ ++.|++++...+...+...
T Consensus 153 ~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred HHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 33200044324210167878789999999999886
No 246
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.29 E-value=3.9e-11 Score=91.91 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=66.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEE----ECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997----399489999879840101235753210023455
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS----EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~----~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
.|.|+|++||||+||++.|...+...| +|+-.+..|.+. .....+.++|+||.-+ +....++.+
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~~~~~T----~tS~~~n~~~~~~~~~~~~~~~~lvD~PGH~k--------lR~~~~~~~ 69 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST----VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK--------LRDKLLETL 69 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCCCEEEECCCCCCCCEEEEEECCCCHH--------HHHHHHHHH
T ss_conf 599990799989999999974998887----78887862066402466872799998799688--------999999998
Q ss_pred H-HHHHHCCCCHHHHHH---HCCHH---HHHHHH--HHCCCCCEEEEEECCCHH
Q ss_conf 5-532100110000100---00000---122345--442872025787211010
Q gi|254780941|r 100 K-HADIVCLVVDSHREL---KVNIH---DLLKEI--AKRSSRLILILNKIDCVK 144 (311)
Q Consensus 100 ~-~aDiil~VvDa~~~~---~~~~~---~il~~l--~~~~~p~IiVlNKiDlv~ 144 (311)
. .++.|+||||+.... .+.-. .++... .....|++++.||.|+..
T Consensus 70 ~~~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~t 123 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 754989999996887511199999999999862664368998899986614345
No 247
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=2.2e-11 Score=93.50 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=88.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH-CCCE----EEECCCCCCEE--EE--EE------EEEEECC--EEEEEEECCCCHHHC
Q ss_conf 2189983389986889999986-8920----21058888602--12--78------9997399--489999879840101
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFV-GAKV----SIVTHKVQTTR--SI--VR------GIVSEKE--SQIVFLDTPGIFNAK 84 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~-g~~v----sivS~k~~TTr--~~--i~------gi~~~~~--~qiifvDTPG~~~~~ 84 (311)
+--|.+||-++||||+|+.+.+ +... ...+..| |+- +. +. .....++ ..+-+.||+|-.+
T Consensus 2 t~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~p-Tv~~~~~~~~~~~~~~~~~~~vdg~~v~L~iWDTAG~~~-- 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP-TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCEEEECCEEEEEEEEECCCCHH--
T ss_conf 77999987899898999977874787655656667588-663333313444430221142189599999997899620--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHH-H-HHHHHHH--CCCCCEEEEEECCCHHH---------------
Q ss_conf 235753210023455553210011000010000000-1-2234544--28720257872110104---------------
Q gi|254780941|r 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-D-LLKEIAK--RSSRLILILNKIDCVKP--------------- 145 (311)
Q Consensus 85 ~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~-~-il~~l~~--~~~p~IiVlNKiDlv~~--------------- 145 (311)
++... +..++|+++++.|.++..+-... . .+.++++ .+.|+++|-||+|+-..
T Consensus 79 -----~~r~~---~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 79 -----KDRRF---AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred -----HCCCC---CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCCC
T ss_conf -----01214---3568889999996698014899999999999986899988999637575446302455543001365
Q ss_pred ---HH--HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf ---34--578888641001233431100013874267899999836
Q gi|254780941|r 146 ---ER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 146 ---~~--l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
.+ ..+..+.+.+..+. ..+.+||++|+|++++.+.+++.+
T Consensus 151 ~~~~~~v~~ee~~~~A~~~g~-~y~EtSAkt~~gV~e~F~~air~A 195 (195)
T cd01873 151 IKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRAA 195 (195)
T ss_pred CCCCCCCCHHHHHHHHHHHCC-EEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 543576789999999998299-899828487989799999999829
No 248
>KOG0461 consensus
Probab=99.28 E-value=2.5e-11 Score=93.14 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=100.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEE---E--EEE---------ECCEEEEEEECCCCHHHCCCC
Q ss_conf 189983389986889999986892-0210588886021278---9--997---------399489999879840101235
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVR---G--IVS---------EKESQIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~---g--i~~---------~~~~qiifvDTPG~~~~~~~l 87 (311)
.+++++|.-.+||+||-.+|..-- -|+-...||.|...|. | .++ -+.-|+.|+|.||
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG-------- 79 (522)
T KOG0461 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG-------- 79 (522)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEECCC--------
T ss_conf 244357402576489999998631403322487531046267412204413572337876641269971797--------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH----HHHHHHHHHH------
Q ss_conf 753210023455553210011000010000000122345442872025787211010434----5788886410------
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER----LLEQAEIANK------ 157 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~----l~~~~~~~~~------ 157 (311)
+..+.+.......-.|+.++|+|+..+...+.-+.+-.-...-++.++|+||+|.+...+ +.+......+
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 08899999710120013467886101766652145443766446269999501226530245678999999997787457
Q ss_pred CCCCCCCCCCCCCCC----CCHHHHHHHHHHHC
Q ss_conf 012334311000138----74267899999836
Q gi|254780941|r 158 LVFIEKTFMVSATKG----HGCDDVLNYLCSTL 186 (311)
Q Consensus 158 ~~~~~~i~~ISAk~g----~Gid~L~~~L~~~l 186 (311)
+.+...|+++||+.| +++.+|++.|.+..
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 688885267643787540667899999999762
No 249
>PRK13768 GTPase; Provisional
Probab=99.28 E-value=4.5e-12 Score=97.99 Aligned_cols=164 Identities=22% Similarity=0.274 Sum_probs=91.9
Q ss_pred EEEEECCCCCCHHHHHHHHH------CCCEEEECCCCCC-------E---EEEE----------EE----E---------
Q ss_conf 89983389986889999986------8920210588886-------0---2127----------89----9---------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFV------GAKVSIVTHKVQT-------T---RSIV----------RG----I--------- 64 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~------g~~vsivS~k~~T-------T---r~~i----------~g----i--------- 64 (311)
.+.++|+|++||||+.+++. |.++++|-==|.. . |+-+ +| +
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~~ 83 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLLT 83 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999999976997599978986658999988637861789999988198964689999999999
Q ss_pred --------EEECCEEEEEEECCCCHHH--CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC-----HHHHHHHHHHC
Q ss_conf --------9739948999987984010--12357532100234555532100110000100000-----00122345442
Q gi|254780941|r 65 --------VSEKESQIVFLDTPGIFNA--KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-----IHDLLKEIAKR 129 (311)
Q Consensus 65 --------~~~~~~qiifvDTPG~~~~--~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~-----~~~il~~l~~~ 129 (311)
+...+..++++||||-++- .......+.+...+.. . -+++|++|+..-.++. ....+..+-+.
T Consensus 84 ~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~-~-~~~v~l~D~~~~~~~~~fiS~~L~a~s~m~~l 161 (253)
T PRK13768 84 KAEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGS-K-SLSVYLIDAVLAKDPSDFVSLLLLALSVQLRL 161 (253)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCC-C-EEEEEEECHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 899999998515887599826874432223407999999986368-6-28999845056378879999999999999973
Q ss_pred CCCCEEEEEECCCHHHHHHH---HHH-------------------------HHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87202578721101043457---888-------------------------86410012334311000138742678999
Q gi|254780941|r 130 SSRLILILNKIDCVKPERLL---EQA-------------------------EIANKLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 130 ~~p~IiVlNKiDlv~~~~l~---~~~-------------------------~~~~~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
+.|.+.|+||+|+++++... +.. ..+.+....-..+|+||++++|+++|...
T Consensus 162 ~lP~inVlsK~Dll~~~~~~~i~~~~~D~~~l~~~l~~~~~~~~~l~~~l~~~l~e~~~~v~~ipvS~~~~eg~~~l~~~ 241 (253)
T PRK13768 162 GLPQIPVLNKIDLLSEEELERIRKWLEDPETLLEELKLDKGVQGDLAEELLSALEESGIPVRVIPVSAKTGEGFEELYAL 241 (253)
T ss_pred CCCEEEEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 99979986768627837799999986299999999850611589999999999998466665277568987879999999
Q ss_pred HHHHCCCC
Q ss_conf 99836622
Q gi|254780941|r 182 LCSTLPLA 189 (311)
Q Consensus 182 L~~~lpe~ 189 (311)
|-+.+--|
T Consensus 242 I~~~~~~g 249 (253)
T PRK13768 242 LQEVFCGG 249 (253)
T ss_pred HHHHHCCC
T ss_conf 99996265
No 250
>KOG0458 consensus
Probab=99.28 E-value=1.5e-11 Score=94.53 Aligned_cols=180 Identities=24% Similarity=0.284 Sum_probs=104.7
Q ss_pred EEEEECCCCCCHHHHHHHHH---CC----------CEEEECCCC---------CCEEEEEEEE--------EEECCEEEE
Q ss_conf 89983389986889999986---89----------202105888---------8602127899--------973994899
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFV---GA----------KVSIVTHKV---------QTTRSIVRGI--------VSEKESQIV 73 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~---g~----------~vsivS~k~---------~TTr~~i~gi--------~~~~~~qii 73 (311)
.-+++|..+||||||+-+|+ |. +-|.-..|. +|-..+-+|+ +..+..-++
T Consensus 179 ~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~t 258 (603)
T KOG0458 179 NLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVT 258 (603)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCEEEE
T ss_conf 89997023454111023788873686578899999998752875302567743631245436367754689846861699
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-------CCHHHHHHHHHHCCCC-CEEEEEECCCHH-
Q ss_conf 9987984010123575321002345555321001100001000-------0000122345442872-025787211010-
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK-------VNIHDLLKEIAKRSSR-LILILNKIDCVK- 144 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~-------~~~~~il~~l~~~~~p-~IiVlNKiDlv~- 144 (311)
++|+|| ++.++..+......||+.++|||++.+.. .+..+....++..++. +++++||+|.+.
T Consensus 259 liDaPG--------hkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458 259 LIDAPG--------HKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred EECCCC--------CCCCCHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 860787--------423552343362215668999987754333134879865899999987495258888630101275
Q ss_pred -HHHHHHHHHHHH----HCCCCC----CCCCCCCCCCCCHHHHHH--HHHHHCCCCCCCC-------CCCCCCCCHHHHH
Q ss_conf -434578888641----001233----431100013874267899--9998366223568-------9643343025678
Q gi|254780941|r 145 -PERLLEQAEIAN----KLVFIE----KTFMVSATKGHGCDDVLN--YLCSTLPLAPWVY-------SADQISDLPMFHF 206 (311)
Q Consensus 145 -~~~l~~~~~~~~----~~~~~~----~i~~ISAk~g~Gid~L~~--~L~~~lpe~~~~y-------~~~~~Td~~~~~~ 206 (311)
+++..+....+. +..+|. ..+|+|+.+|+|+-.--. .+.+ =+.||.++ +++--++.|-++-
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~-WY~Gp~LL~~id~~~~p~~~~~kPl~lt 409 (603)
T KOG0458 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQ-WYKGPTLLSQIDSFKIPERPIDKPLRLT 409 (603)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHH-HHCCCHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 388999999989999998528504776569554656776212334135566-5338808888861368887666774878
Q ss_pred HHHHHH
Q ss_conf 998759
Q gi|254780941|r 207 TAEITR 212 (311)
Q Consensus 207 i~EiIR 212 (311)
|++++|
T Consensus 410 Isdi~~ 415 (603)
T KOG0458 410 ISDIYP 415 (603)
T ss_pred HHHEEE
T ss_conf 300543
No 251
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=3.8e-11 Score=91.95 Aligned_cols=150 Identities=21% Similarity=0.311 Sum_probs=101.4
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEE---EEEECCEEEEEEECCCC
Q ss_conf 776541014332436851218998338998688999998689202105888860212789---99739948999987984
Q gi|254780941|r 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG---IVSEKESQIVFLDTPGI 80 (311)
Q Consensus 4 ~e~~~~~~~~~~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~g---i~~~~~~qiifvDTPG~ 80 (311)
.|--+.-+..|-.++.+-.-.||++|+|++|||||+++|+.... ..|-..+.| +++.....++|+..|-=
T Consensus 21 ~ekk~hvp~vdr~~~epPP~vVavvGPpgvGKtTLiksLvk~yt-------k~~l~~i~GPiTvvs~K~rRiTfiEc~nD 93 (225)
T cd01882 21 EEKKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYT-------KQNISDIKGPITVVTGKKRRLTFIECPND 93 (225)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-------HCCCCCCCCCEEEEECCCEEEEEEECCCH
T ss_conf 88876266413587899996999989899778899999999985-------44375578887999468426899974860
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHH------H
Q ss_conf 0101235753210023455553210011000010000000122345442872-02578721101043457888------8
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQA------E 153 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~------~ 153 (311)
++ ......+-||++++++|++-+++.+..++++.+...+.| ++-|++-.|..++...+... .
T Consensus 94 ------i~-----smiD~AKvADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~R 162 (225)
T cd01882 94 ------IN-----AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHR 162 (225)
T ss_pred ------HH-----HHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf ------99-----9987887643368886166553520899999999759994378854431015578899999999999
Q ss_pred HHHHCCCCCCCCCCCCCC
Q ss_conf 641001233431100013
Q gi|254780941|r 154 IANKLVFIEKTFMVSATK 171 (311)
Q Consensus 154 ~~~~~~~~~~i~~ISAk~ 171 (311)
.+.+.+.-.+.|+.|...
T Consensus 163 FwtE~y~gaKlFylsg~~ 180 (225)
T cd01882 163 FWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred HHHHHCCCCEEEEECCCC
T ss_conf 999865995688633532
No 252
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.26 E-value=4e-11 Score=91.82 Aligned_cols=162 Identities=25% Similarity=0.268 Sum_probs=118.2
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECCE-EEEEEECCCCHHHCCCCCCCCCC
Q ss_conf 43685121899833899868899999868920210588886021278-99973994-89999879840101235753210
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKES-QIVFLDTPGIFNAKDSYHKLMIR 93 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~~-qiifvDTPG~~~~~~~l~~~~~~ 93 (311)
.....|...|.++|....||++|+..+-..+++... --+.|.+.-. .+...++. ++.|+||||.- .+..
T Consensus 84 ~~~~~~pp~~~~~gh~dhg~~~ll~~~~~~~~~~~~-~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~--------~f~~ 154 (594)
T TIGR00487 84 DLLVPRPPVVTIMGHVDHGKTSLLDSIRKTKVAAGE-AGGITQHIGAYHVEKEDGKKWITFLDTPGHE--------AFTL 154 (594)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCHHHCCEEEEEECCCCEEEEEECCCCHH--------HHHH
T ss_conf 111024763688512355403456555410000111-3652010130456642884379984077536--------7787
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHH----HHCCCCCCCCCC
Q ss_conf 023455553210011000010000000122345442872025787211010--43457888864----100123343110
Q gi|254780941|r 94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEIA----NKLVFIEKTFMV 167 (311)
Q Consensus 94 ~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~~----~~~~~~~~i~~I 167 (311)
.-.+...-.|++++++-+.++..+...+.+......+.|+++.+||+|+.. ++.+......+ ..|.+....+|+
T Consensus 155 ~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~ 234 (594)
T TIGR00487 155 MRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPV 234 (594)
T ss_pred HHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEE
T ss_conf 76337610015799984155642356887653333077369986124676678778999987517750112783468862
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
||++|.|+++|++.+.-..
T Consensus 235 ~~~~g~g~~~l~~~~l~~~ 253 (594)
T TIGR00487 235 SALTGDGIDELLDAILLQS 253 (594)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 0013676578888888764
No 253
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.4e-11 Score=90.10 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=87.3
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE------E-------------EEEEEEEEC-CEEEEEEE
Q ss_conf 368512189983389986889999986892021058888602------1-------------278999739-94899998
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR------S-------------IVRGIVSEK-ESQIVFLD 76 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr------~-------------~i~gi~~~~-~~qiifvD 76 (311)
.++.| +|+|+|.--+|||||.-+|+=.. -..++++-++ | ..-..+... +++|.|+|
T Consensus 7 ~~~~R--NigI~aHidaGKTTltE~lL~~t--G~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 7 LERIR--NIGIVAHIDAGKTTLTERILFYT--GIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred CCCCE--EEEEEECCCCCCHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEEC
T ss_conf 44540--79999604788077889999875--975778556678654788788986697786405689970865899957
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 79840101235753210023455553210011000010000000122345442872025787211010
Q gi|254780941|r 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 77 TPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
|||..+ +...+.+++.-+|.++.|+||..+..++...++.++.+.+.|.++++||+|++-
T Consensus 83 TPGHVD--------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 83 TPGHVD--------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG 142 (697)
T ss_pred CCCCCC--------CHHHHHHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 997353--------477879988861650999988788300379999998655997599997843355
No 254
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.25 E-value=1.3e-11 Score=95.08 Aligned_cols=144 Identities=22% Similarity=0.286 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
.+++||+...||.||+|+|-|..+-. .|.| ++-..+.+ -+||||-+-. ++.......-+..++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ-------Ave~~d~~---~IDTPGEy~~----~~~~Y~aL~tt~~dad 66 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ-------AVEFNDKG---DIDTPGEYFE----HPRWYHALITTLQDAD 66 (148)
T ss_pred EEEEECCCCCCCHHHHHHHHCCHHHH--CCCC-------EEECCCCC---CCCCCHHHHH----HHHHHHHHHHHHHCCC
T ss_conf 06875145657316788861603321--0000-------13304755---6588066652----4678999988761133
Q ss_pred HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 10011000010000000122345442872025787211010434578888641001233431100013874267899999
Q gi|254780941|r 104 IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 104 iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~ 183 (311)
++++|..++++.+..--.++.. ..+|+|-|++|+|+..+.++......+.+ .+..+||.+||....|+++|+++|.
T Consensus 67 vi~~v~~and~~s~f~p~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~e-aGa~~iF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 67 VIIYVHAANDPESRFPPGFLDI---GVKKVIGVVTKADLAEDADISLVKRWLRE-AGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred EEEEEECCCCCCCCCCCCCCCC---CCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 2554300268444488421344---66655899860346646768999999997-4875268872558311999999997
Q ss_pred HHCC
Q ss_conf 8366
Q gi|254780941|r 184 STLP 187 (311)
Q Consensus 184 ~~lp 187 (311)
..-+
T Consensus 143 ~~e~ 146 (148)
T COG4917 143 SLEG 146 (148)
T ss_pred HHCC
T ss_conf 4013
No 255
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.24 E-value=9.1e-12 Score=96.00 Aligned_cols=59 Identities=32% Similarity=0.415 Sum_probs=44.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC
Q ss_conf 18998338998688999998689-----202105888860212789997399489999879840101
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~ 84 (311)
+-|-+||.+|||||||+|+|++. +..-||+.|+||++.+.-- .++ ...++||||+..+.
T Consensus 155 ~dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~S~~PGTTL~~i~i~--l~~-~~~i~DTPGi~~~~ 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--LDD-GHSLYDTPGIINSH 218 (360)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEE--CCC-CCEEECCCCCCCHH
T ss_conf 95899916866589999999876167777236458998533307875--389-95574577655742
No 256
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=99.24 E-value=1.1e-11 Score=95.36 Aligned_cols=60 Identities=33% Similarity=0.433 Sum_probs=44.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC
Q ss_conf 18998338998688999998689-----2021058888602127899973994899998798401012
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~ 85 (311)
+-|-+||.+|||||||+|+|+.+ .+.-||+-|+||.+.+..-+ ++. ..++||||+.....
T Consensus 163 ~dvyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~S~~PGTTL~~i~ipl--~~~-~~l~DTPGi~~~~q 227 (367)
T PRK13796 163 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DDG-SFLYDTPGIIHRHQ 227 (367)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEC--CCC-CEEECCCCCCCHHH
T ss_conf 858999157575899999999871678773134489986303178723--898-56755888667446
No 257
>KOG0094 consensus
Probab=99.23 E-value=7e-11 Score=90.28 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=101.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEE--------EEECCEEEEEEECCCCHHHCCCCCCCC
Q ss_conf 512189983389986889999986892021058888602127899--------973994899998798401012357532
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI--------VSEKESQIVFLDTPGIFNAKDSYHKLM 91 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi--------~~~~~~qiifvDTPG~~~~~~~l~~~~ 91 (311)
.|.--|.++|-.+|||+||+++..-.+. ++|-.+..|+ +......+-+.||+|- +++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~f-------d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ--------ERF 84 (221)
T KOG0094 20 LKKYKLVFLGDQSVGKTSLITRFMYDKF-------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERF 84 (221)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHH-------CCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCH--------HHH
T ss_conf 3077899986676544788889987630-------4645654656777888997381789998754467--------877
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHH-CCHHHHHHHHHH-CC---CCCEEEEEECCCHHHHHHH-HHHHHHHHCCCCCCCC
Q ss_conf 1002345555321001100001000-000012234544-28---7202578721101043457-8888641001233431
Q gi|254780941|r 92 IRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAK-RS---SRLILILNKIDCVKPERLL-EQAEIANKLVFIEKTF 165 (311)
Q Consensus 92 ~~~~~~~l~~aDiil~VvDa~~~~~-~~~~~il~~l~~-~~---~p~IiVlNKiDlv~~~~l~-~~~~~~~~~~~~~~i~ 165 (311)
...+-+.+.++++++.|.|.++..+ ......++.+.+ .+ .-+++|-||.||+++.++. +.-+...+.++. ..+
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~ 163 (221)
T KOG0094 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFI 163 (221)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-EEE
T ss_conf 5310555038737999996356401776999999998606888659999716312444656538878988987295-899
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1000138742678999998366223
Q gi|254780941|r 166 MVSATKGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 166 ~ISAk~g~Gid~L~~~L~~~lpe~~ 190 (311)
.+||+.|+|+..|...|...||+-+
T Consensus 164 etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094 164 ETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 8304479988999999998665731
No 258
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.20 E-value=1.6e-10 Score=87.86 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=88.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE-ECCCCCCEEEEEEEEEEE-------CCEEEEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf 89983389986889999986892021-058888602127899973-------9948999987984010123575321002
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSI-VTHKVQTTRSIVRGIVSE-------KESQIVFLDTPGIFNAKDSYHKLMIRLS 95 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsi-vS~k~~TTr~~i~gi~~~-------~~~qiifvDTPG~~~~~~~l~~~~~~~~ 95 (311)
.|.++|-++||||||+++++...... .++..+++-.. ...+. ....+-|.||+|- +.+....
T Consensus 2 KIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~--k~~~~~~~~~~~k~~~l~lWDtaGq--------ery~sl~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDV--KHHTYKEGTPEEKTFFVELWDVGGS--------ESVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEE--EEEEECCCCCCCCEEEEEEEECCCC--------HHHHHHH
T ss_conf 89999999989999999998398888888850367899--9999337876783899999989987--------7577678
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCC-HHHHHHHH----------------------HHCCCCCEEEEEECCCHHHHHH----
Q ss_conf 34555532100110000100000-00122345----------------------4428720257872110104345----
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVN-IHDLLKEI----------------------AKRSSRLILILNKIDCVKPERL---- 148 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~-~~~il~~l----------------------~~~~~p~IiVlNKiDlv~~~~l---- 148 (311)
.....++|.+++|.|.++..+-+ ....+.++ .....|+++|-||.|++.....
T Consensus 72 ~~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~~~~~~ 151 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCH
T ss_conf 99758898999999894989998699999999753676665455666555333467897589997606524343555423
Q ss_pred -HHHHHHHHHCCC---------CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -788886410012---------3343110001387426789999983
Q gi|254780941|r 149 -LEQAEIANKLVF---------IEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 149 -~~~~~~~~~~~~---------~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
........+..+ ....+.-||.++.++....+..++.
T Consensus 152 ~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~ 198 (202)
T cd04102 152 VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55530257775166788874568440034675516899999999888
No 259
>KOG1424 consensus
Probab=99.19 E-value=3.8e-11 Score=91.99 Aligned_cols=68 Identities=26% Similarity=0.345 Sum_probs=51.7
Q ss_pred CCCCCC-EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCC
Q ss_conf 368512-18998338998688999998689202105888860212789997399489999879840101235
Q gi|254780941|r 17 QDNSRS-GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 17 ~~~~ks-g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l 87 (311)
.+.++. -.|++||.|||||||+||+|+|.|..-||..||-|++-.+-.++ -.+.+-|.||++-+....
T Consensus 308 ~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424 308 GERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEC---CCCEECCCCCCCCCCCCC
T ss_conf 777776058875248887627778887557446663489876403789707---876444788721568771
No 260
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.19 E-value=4.1e-11 Score=91.80 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=65.3
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC--CCCCCCCC
Q ss_conf 2436851218998338998688999998689202105888860212789997399489999879840101--23575321
Q gi|254780941|r 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK--DSYHKLMI 92 (311)
Q Consensus 15 ~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~--~~l~~~~~ 92 (311)
..++.--|..|.++|+.+||||+.+|+|+|++++.||+.--+|.....-..+.++..+.++||||+..+. ...|+..+
T Consensus 24 ~~~~~~~sltILvlGKtGVGKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv~G~kl~iIDTPGL~~~~~~~~~N~k~l 103 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 35245643699998068764577677650854134477677886508998753344899860898776654221309999
Q ss_pred CHHHHHHHH--HHHHCCC
Q ss_conf 002345555--3210011
Q gi|254780941|r 93 RLSWSTIKH--ADIVCLV 108 (311)
Q Consensus 93 ~~~~~~l~~--aDiil~V 108 (311)
..+...+.. .|++|||
T Consensus 104 ~~iKr~l~~~~~DvvLYv 121 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYV 121 (249)
T ss_pred HHHHHHHCCCCCCEEEEE
T ss_conf 999999628999789998
No 261
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=99.19 E-value=5e-11 Score=91.21 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=101.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCE------------------------EEECCC------CCCEEEEEEEEEEECCEE
Q ss_conf 21899833899868899999868920------------------------210588------886021278999739948
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKV------------------------SIVTHK------VQTTRSIVRGIVSEKESQ 71 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~v------------------------sivS~k------~~TTr~~i~gi~~~~~~q 71 (311)
.-+||++|.-.+||||++=+|+=+-= +-|=++ -+.|-|-...-...+.|+
T Consensus 7 ~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFeT~KY~ 86 (445)
T TIGR00483 7 HINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFETDKYE 86 (445)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf 24489982540885026677775428965899999987575518730367654311000001562243344541788516
Q ss_pred EEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH-------HHCCHHHHHHHHHHCCCC-CEEEEEECCCH
Q ss_conf 9999879840101235753210023455553210011000010-------000000122345442872-02578721101
Q gi|254780941|r 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-------LKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 (311)
Q Consensus 72 iifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~-------~~~~~~~il~~l~~~~~p-~IiVlNKiDlv 143 (311)
++++|.|| |+.+++........||..++|+|..+. ..++..+.+-.....+.. +|+++||+|.+
T Consensus 87 ~TivDcPG--------HRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD~V 158 (445)
T TIGR00483 87 VTIVDCPG--------HRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMDSV 158 (445)
T ss_pred EEEEECCC--------CCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCCCE
T ss_conf 99984698--------7013431126675124279999525441024012178605778887750320453331024610
Q ss_pred HHHH-----HHHHHHH-HHHCCCC----CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 0434-----5788886-4100123----34311000138742678999998366223568
Q gi|254780941|r 144 KPER-----LLEQAEI-ANKLVFI----EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 (311)
Q Consensus 144 ~~~~-----l~~~~~~-~~~~~~~----~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y 193 (311)
+-++ +.+.... +-+..++ -+.+|+||..|+|+ .+..-..|||-
T Consensus 159 ~yd~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~~~GDN~-------~~~s~~~PWYk 211 (445)
T TIGR00483 159 NYDEEEFEALKKEVSEQLLKKVGYKPDEVPFIPISAFEGDNV-------IKKSENTPWYK 211 (445)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCH-------HHHHCCCCCCC
T ss_conf 027789999999999989987488756123254035467613-------43303888525
No 262
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.19 E-value=3.2e-11 Score=92.51 Aligned_cols=62 Identities=29% Similarity=0.457 Sum_probs=50.3
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 43685121899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
.+++.+...++++|+||||||||+|+|.|++.++||+.|||||+... + .. +..+.|+||||+
T Consensus 95 ~~~~~~~~~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~~~~-i-~~-~~~~~liDTpGi 156 (156)
T cd01859 95 AKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL-V-KI-TSKIYLLDTPGV 156 (156)
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECCEEE-E-EE-CCCEEEEECCCC
T ss_conf 02356662899981478459899999748813777599980705599-9-97-998899989099
No 263
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.18 E-value=8.3e-11 Score=89.78 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=90.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE----------EECCCCCCEEEEE--------------EEE--------EEECCEE
Q ss_conf 8998338998688999998689202----------1058888602127--------------899--------9739948
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVS----------IVTHKVQTTRSIV--------------RGI--------VSEKESQ 71 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vs----------ivS~k~~TTr~~i--------------~gi--------~~~~~~q 71 (311)
...-.|-..-|||||+-+|+-..-+ -.|.+.+|+-+.+ .|| ...+...
T Consensus 8 RfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRk 87 (431)
T COG2895 8 RFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRK 87 (431)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCE
T ss_conf 68975353686023244655310110577999875213123677875452563325688886496599876410366630
Q ss_pred EEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHH-HHH
Q ss_conf 9999879840101235753210023455553210011000010000000122345442872-02578721101043-457
Q gi|254780941|r 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPE-RLL 149 (311)
Q Consensus 72 iifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~-~l~ 149 (311)
|++.||||. +...+........||+.+++|||.++.-++.....-...-.+.+ +++.+||||+++-+ ...
T Consensus 88 FIiADTPGH--------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 88 FIIADTPGH--------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred EEEECCCCH--------HHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHH
T ss_conf 898459967--------987642223623003799999642216777677899999728767999974101235678999
Q ss_pred HH-HHH---HHHCCCC--CCCCCCCCCCCCCHH
Q ss_conf 88-886---4100123--343110001387426
Q gi|254780941|r 150 EQ-AEI---ANKLVFI--EKTFMVSATKGHGCD 176 (311)
Q Consensus 150 ~~-~~~---~~~~~~~--~~i~~ISAk~g~Gid 176 (311)
+. ... +...++. ...+|+||+.|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCC
T ss_conf 999999999999769985247743230487533
No 264
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=99.17 E-value=1.4e-10 Score=88.40 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=67.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEE--CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99833899868899999868920210--5888860212789997399489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsiv--S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
|+++|.++||||||+.++++.....- +...+.+..............+.|.||+|--. ........+.++
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~~~~ 73 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREE--------LKFEHIIFMKTA 73 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHH--------HHHHHHHHCCCC
T ss_conf 999998997899999999839888766678777768889999999289999998999677--------766665422587
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHH---HH--CCCCCEEEEEECC
Q ss_conf 2100110000100000-00122345---44--2872025787211
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEI---AK--RSSRLILILNKID 141 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l---~~--~~~p~IiVlNKiD 141 (311)
|++++|.|.++..+-. ...+++++ +. .+.|+++|.||+|
T Consensus 74 d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 74 DAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 467899979987899999999999999982099998899996859
No 265
>KOG0078 consensus
Probab=99.17 E-value=3.7e-10 Score=85.57 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=100.2
Q ss_pred CCCCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE---EEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCC
Q ss_conf 851218-99833899868899999868920210588886021---27899973994--8999987984010123575321
Q gi|254780941|r 19 NSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS---IVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMI 92 (311)
Q Consensus 19 ~~ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~---~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~ 92 (311)
++-.++ |.++|-++||||.++-++....-. +.. .+|-- .+.. ++.++. .+-++||.| .+++.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~--~~~-~sTiGIDFk~kt-i~l~g~~i~lQiWDtaG--------Qerf~ 75 (207)
T KOG0078 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN--TSF-ISTIGIDFKIKT-IELDGKKIKLQIWDTAG--------QERFR 75 (207)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC--CCC-CCEEEEEEEEEE-EEECCEEEEEEEEECCC--------CHHHH
T ss_conf 8451899999778987655766654406676--776-515878878889-98389089999997243--------05678
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHH-CCHHHHHHHH---HHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCC
Q ss_conf 002345555321001100001000-0000122345---4428720257872110104345-7888864100123343110
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEI---AKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMV 167 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~-~~~~~il~~l---~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~I 167 (311)
..+-+.+.+|+.+++|+|.+.... ......++.+ ...+.|.++|-||+|+..+..+ .++.+.+...++. ..+.+
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~Et 154 (207)
T KOG0078 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFET 154 (207)
T ss_pred HHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCC-EEEEC
T ss_conf 89999986548249999845257777799999999863788874898511412101333567999999998498-27971
Q ss_pred CCCCCCCHHHHHHHHHHHCC
Q ss_conf 00138742678999998366
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~lp 187 (311)
||++|.||++..-.|...+.
T Consensus 155 SAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078 155 SAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 33679988999999999998
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.17 E-value=9e-11 Score=89.55 Aligned_cols=172 Identities=19% Similarity=0.186 Sum_probs=103.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH----HH
Q ss_conf 8998338998688999998689202105888-860212789997399489999879840101235753210023----45
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW----ST 98 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~-~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~----~~ 98 (311)
.|+++|++.+|||+.-|.|+|+++.....-+ ..|+.-........+.++.+|||||+...... .+...+... -+
T Consensus 2 rIvLlGktGsGKSstgNtILG~~~F~s~~~~~svT~~c~~~~~~~~gr~v~VIDTPg~~dt~~~-~~~~~~ei~~~~~l~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS-PEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCC-HHHHHHHHHHHHHHC
T ss_conf 8999789998615340325687666788999987558888889988937999967763565589-799999999999843
Q ss_pred HHHHHHHCCCCHHHHHHHCCHHHHHHHHHH-----CCCCCEEEEEECCCHHHHHHHHHHH--------HHHHCCCCCCCC
Q ss_conf 555321001100001000000012234544-----2872025787211010434578888--------641001233431
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAK-----RSSRLILILNKIDCVKPERLLEQAE--------IANKLVFIEKTF 165 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~l~~~~~--------~~~~~~~~~~i~ 165 (311)
-.+.+++|+|+...+ ++..+...++.+.. .-.-.|++++-.|.+....+.+.++ .+.+..+-..+|
T Consensus 81 ~pGpHa~LLVi~~~r-fT~ee~~~v~~i~~~FGe~~~~~tivLFT~~D~L~~~sie~~i~~~~~~L~~li~kCg~Ry~~f 159 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAF 159 (196)
T ss_pred CCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCEEEEE
T ss_conf 899739999997898-8989999999999997778685289999654011688699998734699999999859989998
Q ss_pred CC---CCCCCCCHHHHHHHHHHHCCCC-CCCCCCCC
Q ss_conf 10---0013874267899999836622-35689643
Q gi|254780941|r 166 MV---SATKGHGCDDVLNYLCSTLPLA-PWVYSADQ 197 (311)
Q Consensus 166 ~I---SAk~g~Gid~L~~~L~~~lpe~-~~~y~~~~ 197 (311)
-= .......+.+|++.+.+.+.++ .+.|..++
T Consensus 160 nN~~~~~~~~~QV~eLl~kIe~mv~~N~g~~yt~~~ 195 (196)
T cd01852 160 NNKAKGEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 678997513899999999999999974998888676
No 267
>KOG0075 consensus
Probab=99.17 E-value=2.4e-11 Score=93.32 Aligned_cols=150 Identities=25% Similarity=0.273 Sum_probs=97.4
Q ss_pred EEEECCCCCCHHHHHHHHHC-CCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH-HHHHH
Q ss_conf 99833899868899999868-92021058888602127899973994899998798401012357532100234-55553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVG-AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS-TIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g-~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~-~l~~a 102 (311)
++++|..|+|||||+|.+.. +-.--+-| |+-...--+|.++..+.+.|.||--. . +..|+ ....+
T Consensus 23 l~lvGLq~sGKtt~Vnvia~g~~~edmip----tvGfnmrkvtkgnvtik~wD~gGq~r-----f----rsmWerycR~v 89 (186)
T KOG0075 23 LSLVGLQNSGKTTLVNVIARGQYLEDMIP----TVGFNMRKVTKGNVTIKLWDLGGQPR-----F----RSMWERYCRGV 89 (186)
T ss_pred EEEEEECCCCCCEEEEEEECCCCHHHHCC----CCCCEEEEECCCCEEEEEEECCCCCC-----H----HHHHHHHHCCC
T ss_conf 88885324785258888750674566430----24632688315836999983699760-----8----88999986038
Q ss_pred HHHCCCCHHHHHHH-----CCHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 21001100001000-----0000122345442872025787211010---434578888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELK-----VNIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~-----~~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
|+++|+|||.++-. .+...++..-.-.+.|+++.-||+|+-. ...+.+.+...+-..-.-.-|.||++...|
T Consensus 90 ~aivY~VDaad~~k~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEECCCCC
T ss_conf 68999961678653431299999885032114871799625566755322789999838452446457899998768756
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
+|..+++|.++-+
T Consensus 170 id~~~~Wli~hsk 182 (186)
T KOG0075 170 IDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999767
No 268
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=99.16 E-value=8.6e-10 Score=83.22 Aligned_cols=213 Identities=18% Similarity=0.276 Sum_probs=117.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCC-------CCEE-EEEEEEEEECCE--EEEEEECCCCHHHCCC------C
Q ss_conf 8998338998688999998689202105888-------8602-127899973994--8999987984010123------5
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV-------QTTR-SIVRGIVSEKES--QIVFLDTPGIFNAKDS------Y 87 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~-------~TTr-~~i~gi~~~~~~--qiifvDTPG~~~~~~~------l 87 (311)
.|-++|..+.|||||+|+|++..+......+ .|+. ......+..++. .+.++|||||.+.-+. +
T Consensus 6 nimvvG~sGlGKTTfiNtL~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtiiDTpGfGd~i~n~~~~~~I 85 (280)
T pfam00735 6 TLMVVGESGLGKTTLINTLFLTDLYPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDNSNCWKPI 85 (280)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 99997799997899999985785778667888433556775348899999889989999999899842334516669999
Q ss_pred CCCCCCH-----------HHHHH--HHHHHHCCCCHHH-HHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 7532100-----------23455--5532100110000-10000000122345442872025787211010434578888
Q gi|254780941|r 88 HKLMIRL-----------SWSTI--KHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAE 153 (311)
Q Consensus 88 ~~~~~~~-----------~~~~l--~~aDiil~VvDa~-~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~ 153 (311)
-+++... ..+.+ ..++++||.++.+ +++.+.|.+.++.+.+. .++|-|+-|+|.+.++++.....
T Consensus 86 ~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~~-vNvIPVIaKADtLT~~El~~~K~ 164 (280)
T pfam00735 86 VEYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFMKKLHEK-VNIIPVIAKADTLTPDELQRFKK 164 (280)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99999999999998647566777888437999975688888868899999987144-65366662145589999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 64100123343110001387426789999983662235689643343025678998759999997300456420478853
Q gi|254780941|r 154 IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 (311)
Q Consensus 154 ~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~ 233 (311)
.....+....| + .+.||.+. .|.++. ...-..+..-+|+.+.-..+.
T Consensus 165 ~I~~~l~~~~I----------------------~--i~~f~~~~-~d~~e~--------~~~~~~~~~~~PFaIigS~~~ 211 (280)
T pfam00735 165 RIRAEIERQNI----------------------K--IYHFPDEE-SDEDEE--------KEQTEQLKSSIPFAIVGSNEE 211 (280)
T ss_pred HHHHHHHHCCC----------------------C--EECCCCCC-CCCHHH--------HHHHHHHCCCCCCEEECCCCE
T ss_conf 99999998597----------------------2--54688854-355778--------999987405799779888853
Q ss_pred EECCCCCCEEEE----EEEEEECCCC------CEEEECCCCHHHHHHH
Q ss_conf 310667723589----9999827984------1548746658899999
Q gi|254780941|r 234 WEEKKDGSILIR----QVIYVERPSQ------KKIMLGKNGQNIKTIS 271 (311)
Q Consensus 234 ~~~~~~~~~~I~----~~I~v~k~sq------k~IiiGk~G~~ik~I~ 271 (311)
.+. .+..++.. +.+-|+.+.| |.+++|..=+-|+...
T Consensus 212 ~~~-~g~~vrgR~YpWG~veven~~H~DF~~Lr~~L~~~hl~dL~~~T 258 (280)
T pfam00735 212 IEN-DGKKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVT 258 (280)
T ss_pred EEC-CCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 852-89788665488724731786536389999999999999999998
No 269
>KOG0084 consensus
Probab=99.14 E-value=4.8e-10 Score=84.86 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=100.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE---EEEE-EEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99833899868899999868920210588886021---2789-9973994899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS---IVRG-IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~---~i~g-i~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
|.|+|-.|||||-|+-++.+..-. ..-.+|-- .+.. .+..+...+-+.||+|- +++...+.+...
T Consensus 12 iiliGds~VGKtCL~~Rf~~~~f~---e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ--------ERFrtit~syYR 80 (205)
T KOG0084 12 IILIGDSGVGKTCLLLRFKDDTFT---ESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ--------ERFRTITSSYYR 80 (205)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCC---HHHCCEEEEEEEEEEEEECCEEEEEEEEECCCC--------HHHHHHHHHHCC
T ss_conf 999877896763555666269853---332323126788987555264888876663653--------777555476616
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-00012234544---28720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
+|+.|++|.|.++..+- .....+.++.+ .+.|.++|-||+|+.++..+ .+.++.+...++....+++||+.+.|+
T Consensus 81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084 81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 78759999976557776548899998665246778768886245518640017999999986429830355046875479
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 67899999836622
Q gi|254780941|r 176 DDVLNYLCSTLPLA 189 (311)
Q Consensus 176 d~L~~~L~~~lpe~ 189 (311)
++....|...++..
T Consensus 161 e~~F~~la~~lk~~ 174 (205)
T KOG0084 161 EDAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986
No 270
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.12 E-value=2.4e-09 Score=80.35 Aligned_cols=189 Identities=16% Similarity=0.211 Sum_probs=93.5
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEE--CCCCCCEEEEEEEEEE-------E--------------
Q ss_conf 368512189983389986889999986------8920210--5888860212789997-------3--------------
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIV--THKVQTTRSIVRGIVS-------E-------------- 67 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsiv--S~k~~TTr~~i~gi~~-------~-------------- 67 (311)
+..-++-.|+|.|.|+||||||+-+|. |.+|++. -|-.+-|.-.++|-.+ .
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 11799837873179988668899999999997796789999889999878530120766776446998178426877651
Q ss_pred ----------------CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf ----------------9948999987984010123575321002345555321001100001000000012234544287
Q gi|254780941|r 68 ----------------KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 (311)
Q Consensus 68 ----------------~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~ 131 (311)
-.+.++++-|-|.-.+. -....-+|.+++|.-. +...+ .+.++ ..-...
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-----------v~I~~~aDt~~~v~~p--g~GD~-~Q~iK-~GimEi 190 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-----------VDIANMADTFLVVMIP--GAGDD-LQGIK-AGIMEI 190 (323)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-----------HHHHHHCCEEEEEECC--CCCCH-HHHHH-HHHHHH
T ss_conf 016688999999998618988999814788415-----------5776521668999657--88827-88887-414654
Q ss_pred CCEEEEEECCCHHHHH----HHHHHHHH---HHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 2025787211010434----57888864---100123-343110001387426789999983662235689643343025
Q gi|254780941|r 132 RLILILNKIDCVKPER----LLEQAEIA---NKLVFI-EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 (311)
Q Consensus 132 p~IiVlNKiDlv~~~~----l~~~~~~~---~~~~~~-~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~ 203 (311)
-=++|+||.|+-..+. +....... ....+| -+++-+||.+|+|+++|.+.+.++..... ..+..+....
T Consensus 191 aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~---~sg~~~~~rr 267 (323)
T COG1703 191 ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT---ESGLFTEKRR 267 (323)
T ss_pred HHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCCCHH
T ss_conf 0335672567265899999999999751145423688886467641357787999999999999998---5556321048
Q ss_pred ---HHHHHHHHHHHHHHHHHCCC
Q ss_conf ---67899875999999730045
Q gi|254780941|r 204 ---FHFTAEITREKLFLHLHKEI 223 (311)
Q Consensus 204 ---~~~i~EiIREki~~~l~~Ei 223 (311)
+..+-+++++.+.+.+..+.
T Consensus 268 ~q~~~~~~~~v~~~v~~~~~~~~ 290 (323)
T COG1703 268 TQYVEWIRTLVRDEVLDRLEANP 290 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 89999999999999999997161
No 271
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.12 E-value=2.4e-09 Score=80.31 Aligned_cols=211 Identities=19% Similarity=0.264 Sum_probs=115.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECC--------CCCCEEE-EEEEEEEECCE--EEEEEECCCCHHHCCC------
Q ss_conf 89983389986889999986892021058--------8886021-27899973994--8999987984010123------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTH--------KVQTTRS-IVRGIVSEKES--QIVFLDTPGIFNAKDS------ 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~--------k~~TTr~-~i~gi~~~~~~--qiifvDTPG~~~~~~~------ 86 (311)
.+-++|..+.|||||+|.|++..+..... .++|+.- .....+..++. .+.++|||||.+.-+.
T Consensus 6 nimVvG~sGlGKsTfiNtLf~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~i~e~g~~l~LtviDTpGfGd~i~n~~~~~~ 85 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKP 85 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 99997689998899999974785778777788132056888258999999963998999999976884122360340999
Q ss_pred ----CCC----CCCCH---HH-HHH--HHHHHHCCCCHHH-HHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf ----575----32100---23-455--5532100110000-100000001223454428720257872110104345788
Q gi|254780941|r 87 ----YHK----LMIRL---SW-STI--KHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ 151 (311)
Q Consensus 87 ----l~~----~~~~~---~~-~~l--~~aDiil~VvDa~-~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~ 151 (311)
+.. .+.+. .. ..+ ..++++||.++++ .++.+-|.+.++.+.+ ..++|-|+-|+|.+.++++...
T Consensus 86 I~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~-~vNvIPVIaKADtlT~~El~~~ 164 (276)
T cd01850 86 IVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELKEF 164 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHH
T ss_conf 999999999999999853145788877744899999678888887999999999627-5645667851666999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 88641001233431100013874267899999836622356896433430256789987599999973004564204788
Q gi|254780941|r 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT 231 (311)
Q Consensus 152 ~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~EiPY~~~v~v 231 (311)
...+...+....| ++ +.||.+...+ |.+ +.-..+..-+|+.+.-..
T Consensus 165 K~~I~~~l~~~~I-~i-----------------------f~~~~~~~~~--------~~~--~~~~~i~~~~PFaIi~S~ 210 (276)
T cd01850 165 KQRIMEDIEEHNI-KI-----------------------YKFPEDEEDD--------ETI--EENKKLRSLIPFAVVGSN 210 (276)
T ss_pred HHHHHHHHHHCCC-CE-----------------------ECCCCCCCCH--------HHH--HHHHHHHCCCCCEEECCC
T ss_conf 9999999998596-35-----------------------5798776528--------899--877777447980898678
Q ss_pred EEEECCCCCCEEEE----EEEEEECCCCC------EEEECCCCHHHHHH
Q ss_conf 53310667723589----99998279841------54874665889999
Q gi|254780941|r 232 EKWEEKKDGSILIR----QVIYVERPSQK------KIMLGKNGQNIKTI 270 (311)
Q Consensus 232 ~~~~~~~~~~~~I~----~~I~v~k~sqk------~IiiGk~G~~ik~I 270 (311)
+..+.. +..++.. +.+-|+.+.|= .+++|..=+-++..
T Consensus 211 ~~~~~~-g~~vrgR~YpWG~veven~~H~DF~~Lr~~L~~~hl~dL~~~ 258 (276)
T cd01850 211 EEVEVN-GKKVRGRKYPWGVVEVENEEHCDFVKLRNLLIRTHLQDLKET 258 (276)
T ss_pred CEEEEC-CCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 627508-928877618873584078755758999999999999999999
No 272
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.12 E-value=3.8e-10 Score=85.55 Aligned_cols=163 Identities=22% Similarity=0.283 Sum_probs=103.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEE--------EECCCC-----CCEEEEEEEEEEECCE------------------
Q ss_conf 218998338998688999998689202--------105888-----8602127899973994------------------
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVS--------IVTHKV-----QTTRSIVRGIVSEKES------------------ 70 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vs--------ivS~k~-----~TTr~~i~gi~~~~~~------------------ 70 (311)
--.|+.+|..|+|||||+-+|+--+.- ..+..+ +-|-+...+++-.++.
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred EEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHHHHH
T ss_conf 38999742445786359878984577788840211345416777616532226999972499267605852077776766
Q ss_pred -----EEEEEECCCCHHHCCCCCCCCCCHHHHHH--HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf -----89999879840101235753210023455--55321001100001000000012234544287202578721101
Q gi|254780941|r 71 -----QIVFLDTPGIFNAKDSYHKLMIRLSWSTI--KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 71 -----qiifvDTPG~~~~~~~l~~~~~~~~~~~l--~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
-+.|+||-| ++...+.+.+.+ ...|-.++++-|+++.+....+.+-.+...+.|+|+|++|+|++
T Consensus 197 ~~aDklVsfVDtvG--------HEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 197 KRADKLVSFVDTVG--------HEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HHCCCEEEEEECCC--------CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 52030899985378--------6278998888873266662799998167730330676565646169779999952568
Q ss_pred HHHHHHHHHHHHHH---------------------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCC
Q ss_conf 04345788886410---------------------------01233431100013874267899999836622-3568
Q gi|254780941|r 144 KPERLLEQAEIANK---------------------------LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA-PWVY 193 (311)
Q Consensus 144 ~~~~l~~~~~~~~~---------------------------~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~-~~~y 193 (311)
.++......+..+. .....+||.+||.+|+|++-|.+++ .+||.. .|-+
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp~rr~~~d 345 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLPKRRRWDD 345 (527)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH-HHCCCCCCCCC
T ss_conf 278899999999999997434653550553267765433237825779998224575389999999-74985002477
No 273
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.09 E-value=1.1e-10 Score=88.99 Aligned_cols=58 Identities=45% Similarity=0.584 Sum_probs=48.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH
Q ss_conf 1218998338998688999998689202105888860212789997399489999879840
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~ 81 (311)
....|+|+|+||||||||+|+|.|++.++||+.|||||+... +.. +.++.++||||+.
T Consensus 114 ~~~~v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtTr~~~~-i~~--~~~~~liDTPGI~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW-IKI--SPGIYLLDTPGIL 171 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEE-EEE--CCCEEEEECCCCC
T ss_conf 771799973798761799999748863887698985326679-996--8999999799889
No 274
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=99.09 E-value=9.1e-11 Score=89.53 Aligned_cols=190 Identities=19% Similarity=0.248 Sum_probs=90.6
Q ss_pred CCCE---EEEEECCCCCCHHHHHHHHH------CCCEEE-----ECCCCCCEEEEEEEEEE---ECC--EEEEEEECCCC
Q ss_conf 5121---89983389986889999986------892021-----05888860212789997---399--48999987984
Q gi|254780941|r 20 SRSG---CVALVGATNAGKSTLVNRFV------GAKVSI-----VTHKVQTTRSIVRGIVS---EKE--SQIVFLDTPGI 80 (311)
Q Consensus 20 ~ksg---~VaivG~pN~GKSTL~N~l~------g~~vsi-----vS~k~~TTr~~i~gi~~---~~~--~qiifvDTPG~ 80 (311)
++|| .|+|.|.|.||||||+.+|. |.+|++ +||..+ =.|+|-.+ .-. .| +.--||+
T Consensus 33 p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTG---GsiLGDr~Rm~~~asrkq--lW~dPg~ 107 (333)
T TIGR00750 33 PKTGNAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTG---GSILGDRLRMQRLASRKQ--LWTDPGV 107 (333)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---HHHHHHHHHHHHHHHHHH--HHCCCCC
T ss_conf 43279078766468888577799999899976597689998879759755---145456887754422223--3228985
Q ss_pred -HHHCCCCCCC--CCCHHHHH--------------------------HHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf -0101235753--21002345--------------------------555321001100001000000012234544287
Q gi|254780941|r 81 -FNAKDSYHKL--MIRLSWST--------------------------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 (311)
Q Consensus 81 -~~~~~~l~~~--~~~~~~~~--------------------------l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~ 131 (311)
+++-...+.. +.+.+... ++-||-+++|.=+. .-++.+-++. .=...
T Consensus 108 FIRs~ptrG~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEVdi~~~aDT~v~v~~pg---~GDd~Q~iKa-G~mEi 183 (333)
T TIGR00750 108 FIRSMPTRGSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEVDIINMADTFVVVTIPG---TGDDVQGIKA-GVMEI 183 (333)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCEEEEEECCC---CCCHHHHHHH-HHHEE
T ss_conf 6767766675257879999999999863898799984157524878873415058985488---7834666654-43023
Q ss_pred CCEEEEEECCCHHHHHH---HHH----H---------------------HHHHHCCCCC-CCCCCCCCCCCCHHHHHHHH
Q ss_conf 20257872110104345---788----8---------------------8641001233-43110001387426789999
Q gi|254780941|r 132 RLILILNKIDCVKPERL---LEQ----A---------------------EIANKLVFIE-KTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 132 p~IiVlNKiDlv~~~~l---~~~----~---------------------~~~~~~~~~~-~i~~ISAk~g~Gid~L~~~L 182 (311)
-=|+|+||.|.-..+.+ ... . +.+.+..+|. +++.+||..|.||++|-+.|
T Consensus 184 aDI~VVNKaD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI 263 (333)
T TIGR00750 184 ADIYVVNKADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEGRGIDELWDAI 263 (333)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 24878816887665899999999888888899999865333344430265511010589963887335688716789999
Q ss_pred HHHCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHC
Q ss_conf 983662235689643343025---678998759999997300
Q gi|254780941|r 183 CSTLPLAPWVYSADQISDLPM---FHFTAEITREKLFLHLHK 221 (311)
Q Consensus 183 ~~~lpe~~~~y~~~~~Td~~~---~~~i~EiIREki~~~l~~ 221 (311)
.++-. +.-..+.++.+=- ...+.+++++.+++++..
T Consensus 264 ~eH~~---~l~~~G~~~~~Rr~r~~~~~~~~~~~~V~~~V~a 302 (333)
T TIGR00750 264 EEHKK---FLTESGLLEEKRRERSVEELKKLVEEEVLKKVKA 302 (333)
T ss_pred HHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999---9986360679999999999999999999987642
No 275
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=99.07 E-value=7.6e-10 Score=83.56 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=66.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 89983389986889999986892021--0588886021278999739948999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSI--VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsi--vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
-|-|+|+.|+||+||++.|...+..- +|-.|+.+ .......+..+.++|+||.-+-+..+- ........
T Consensus 5 tvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~~----~~~~~~~~~~~~lvD~PGh~klR~~~~-----~~~~~~~~ 75 (181)
T pfam09439 5 AVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSAA----YKYMNNKGNSLTLIDFPGHVKLRYKLL-----ETLKDSSS 75 (181)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCE----EEEECCCCCEEEEEECCCCHHHHHHHH-----HHHHHHCC
T ss_conf 699986899989999999975994875888678640----687516896689998899689999999-----86430026
Q ss_pred HHHHCCCCHHHH-H--HHCCHH---HHHH--HHHHCCCCCEEEEEECCCHH
Q ss_conf 321001100001-0--000000---1223--45442872025787211010
Q gi|254780941|r 102 ADIVCLVVDSHR-E--LKVNIH---DLLK--EIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 102 aDiil~VvDa~~-~--~~~~~~---~il~--~l~~~~~p~IiVlNKiDlv~ 144 (311)
+..|+||||+.. . ..+.-. .++. ...+.+.|++++.||.|+..
T Consensus 76 ~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~ 126 (181)
T pfam09439 76 LRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFT 126 (181)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCC
T ss_conf 449999997866566799999999999844543368997899973746335
No 276
>KOG0395 consensus
Probab=99.06 E-value=5e-10 Score=84.76 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=93.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEE-CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 21899833899868899999868920210-58888602127899973994899998798401012357532100234555
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIV-THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsiv-S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
.-.|+++|.++||||+|+..+++..-.-. .+....+..... .+..+...+.++||+|..+. ..|.. ..+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~-~v~~~~~~l~ilDt~g~~~~-----~~~~~---~~~~ 73 (196)
T KOG0395 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKEL-TVDGEVCMLEILDTAGQEEF-----SAMRD---LYIR 73 (196)
T ss_pred CEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEE-EECCEEEEEEEEECCCCCCC-----HHHHH---HHHH
T ss_conf 147999778988853057896357554434797676315999-98997889999828885347-----68888---7755
Q ss_pred HHHHHCCCCHHHHHHH-CCHHHHHHHH----HHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5321001100001000-0000122345----4428720257872110104345-78888641001233431100013874
Q gi|254780941|r 101 HADIVCLVVDSHRELK-VNIHDLLKEI----AKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~-~~~~~il~~l----~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
.+|..++|.+.++... .....+.+.+ .....|+++|.||+|+.....+ .+....+...... ..+.+||+...+
T Consensus 74 ~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~-~f~E~Sak~~~~ 152 (196)
T KOG0395 74 NGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGC-AFIETSAKLNYN 152 (196)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHCC-CEEEEECCCCCC
T ss_conf 4868999998988889999999999998640767788799988555323042439999999997099-679975144758
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
++++...|...+
T Consensus 153 v~~~F~~L~r~~ 164 (196)
T KOG0395 153 VDEVFYELVREI 164 (196)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 277
>KOG0076 consensus
Probab=99.05 E-value=4.1e-10 Score=85.33 Aligned_cols=157 Identities=19% Similarity=0.231 Sum_probs=103.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCE-----EEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 1899833899868899999868920-----21058888602127899973994899998798401012357532100234
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKV-----SIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~v-----sivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
-.|.|+|.-||||.|++-++-.... .-+ .|-.+|..-..|.+...+..+.|+|.-|-- ..++.|.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~-~ki~~tvgLnig~i~v~~~~l~fwdlgGQe---------~lrSlw~ 87 (197)
T KOG0076 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNP-SKITPTVGLNIGTIEVCNAPLSFWDLGGQE---------SLRSLWK 87 (197)
T ss_pred HHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCH-HHEECCCCEEECCEEECCCEEEEEECCCHH---------HHHHHHH
T ss_conf 310024244578520898877788765168888-881012240313164125416778867808---------7899999
Q ss_pred -HHHHHHHHCCCCHHHHHHH-----CCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH--HCC--CCCCCCCC
Q ss_conf -5555321001100001000-----0000122345442872025787211010434578888641--001--23343110
Q gi|254780941|r 98 -TIKHADIVCLVVDSHRELK-----VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIAN--KLV--FIEKTFMV 167 (311)
Q Consensus 98 -~l~~aDiil~VvDa~~~~~-----~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~--~~~--~~~~i~~I 167 (311)
....+.+++|++||++... .....++..-.-.+.|+++.+||-|+-......+....+. +.. ....+.||
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99997263477641777788888799999999878762871543400433030566898987742665368865764421
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0013874267899999836622
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~lpe~ 189 (311)
||.+|.|+++=..++...+|.+
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHCCCHHHHHHHHHHHHHHC
T ss_conf 4540556778899999998623
No 278
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.4e-09 Score=81.89 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=103.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE----EE------ECCCC-----CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 899833899868899999868920----21------05888-----8602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV----SI------VTHKV-----QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v----si------vS~k~-----~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
+|+-+|.-+-||+||.-+|++.-. +. .-+-| +-|-+....-+..++..+.++|.||..
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa------- 86 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------- 86 (394)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECCCCEEEECCCCCHH-------
T ss_conf 7878614247635289999999986324010333443048267645725401005886388148861689748-------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEE-EEEECCCHHHHHHHHHH-----HHHHHCCCCC
Q ss_conf 53210023455553210011000010000000122345442872025-78721101043457888-----8641001233
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL-ILNKIDCVKPERLLEQA-----EIANKLVFIE 162 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~Ii-VlNKiDlv~~~~l~~~~-----~~~~~~~~~~ 162 (311)
..++.........|..++|+.|+++..++..+.+-..+..+.|.|+ .+||+|++++.++++.. +.++++ +|.
T Consensus 87 -DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y-~f~ 164 (394)
T COG0050 87 -DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY-GFP 164 (394)
T ss_pred -HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCC
T ss_conf -999987640775376289998478999860564201234288579999742236686899999999999999973-999
Q ss_pred ----CCCCCCCCCCC--------CHHHHHHHHHHHCCC
Q ss_conf ----43110001387--------426789999983662
Q gi|254780941|r 163 ----KTFMVSATKGH--------GCDDVLNYLCSTLPL 188 (311)
Q Consensus 163 ----~i~~ISAk~g~--------Gid~L~~~L~~~lpe 188 (311)
.|+.-||+... -|.+|++.+-++.|.
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred CCCCCEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 87763341123331037721678999999999854899
No 279
>KOG0394 consensus
Probab=99.02 E-value=1e-09 Score=82.77 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=93.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEE-----EECCCCCCEEEEEEEEEEECCE--EEEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf 18998338998688999998689202-----1058888602127899973994--8999987984010123575321002
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVS-----IVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFNAKDSYHKLMIRLS 95 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vs-----ivS~k~~TTr~~i~gi~~~~~~--qiifvDTPG~~~~~~~l~~~~~~~~ 95 (311)
..|.|.|-++||||||+|+.+..+-+ .++.- .-|++ +..++. -+.+.||+|--+- ..++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgad-FltKe-----v~Vd~~~vtlQiWDTAGQERF-qsLg------- 75 (210)
T KOG0394 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGAD-FLTKE-----VQVDDRSVTLQIWDTAGQERF-QSLG------- 75 (210)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEE-----EEECCEEEEEEEEECCCHHHH-HHCC-------
T ss_conf 599993799844789999998888888743200011-03227-----998676999998733117776-3146-------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCC-----HHHHHHHHH---HCCCCCEEEEEECCCHHHH---HHHHHHHHHHHCCCCCCC
Q ss_conf 34555532100110000100000-----001223454---4287202578721101043---457888864100123343
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVN-----IHDLLKEIA---KRSSRLILILNKIDCVKPE---RLLEQAEIANKLVFIEKT 164 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~-----~~~il~~l~---~~~~p~IiVlNKiDlv~~~---~l~~~~~~~~~~~~~~~i 164 (311)
.....+||.++++.|.+..-+-+ -.+++.... ...-|++++-||+|+-..+ .-.+.+..+-...+....
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred CCEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHCCCCEE
T ss_conf 41124775478983268646651187899999874687997756679975511477775012018899999986599506
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1100013874267899999836622
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~lpe~ 189 (311)
|.+|||.+.|+++..+.+...+-..
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394 156 FETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8710243446899999999999861
No 280
>KOG0070 consensus
Probab=99.01 E-value=1.3e-09 Score=82.12 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=98.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 12189983389986889999986892021058888602127899973994899998798401012357532100234555
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
+.-.|.++|.-||||||+++.|--..+--++|..+. ++. .+...+..|.+.|.-|-.+-+... .....
T Consensus 16 ~e~~IlmvGLD~AGKTTILyklk~~E~vttvPTiGf---nVE-~v~ykn~~f~vWDvGGq~k~R~lW--------~~Y~~ 83 (181)
T KOG0070 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGF---NVE-TVEYKNISFTVWDVGGQEKLRPLW--------KHYFQ 83 (181)
T ss_pred CEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCC---CEE-EEEECCEEEEEEECCCCCCCCCCH--------HHHCC
T ss_conf 467999996168986015675025874147786453---136-999866189998158873545313--------53203
Q ss_pred HHHHHCCCCHHHHHHH--CCHHHHHHHHH---HCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5321001100001000--00001223454---428720257872110104---345788886410012334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELK--VNIHDLLKEIA---KRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~--~~~~~il~~l~---~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+.+.++||||+++... +.-.++...+. -.+.|+++..||.|+... .++.......+-......+...+|.+|
T Consensus 84 nt~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G 163 (181)
T KOG0070 84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISG 163 (181)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 77279999817738889999999999976834477369998421204245788898867433014688728953013565
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
+|+.+-+++|.+.+..
T Consensus 164 ~GL~egl~wl~~~~~~ 179 (181)
T KOG0070 164 EGLYEGLDWLSNNLKK 179 (181)
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 4489999999998630
No 281
>KOG0468 consensus
Probab=99.00 E-value=9.7e-10 Score=82.87 Aligned_cols=123 Identities=24% Similarity=0.359 Sum_probs=88.4
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-----CCE-----EEE--------EEEEEE---ECCEEE
Q ss_conf 32436851218998338998688999998689202105888-----860-----212--------789997---399489
Q gi|254780941|r 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV-----QTT-----RSI--------VRGIVS---EKESQI 72 (311)
Q Consensus 14 ~~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~-----~TT-----r~~--------i~gi~~---~~~~qi 72 (311)
++|+...+--.|+++|.-.+||++|+..|.++...-.+... -|+ +.+ ..-+++ .+.+-+
T Consensus 120 ~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ 199 (971)
T KOG0468 120 GLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLM 199 (971)
T ss_pred HHCCCCCEEEEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEE
T ss_conf 75359640799988611456715787763131346555542356313664245675485676132289985676724335
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 999879840101235753210023455553210011000010000000122345442872025787211010
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
.++||||..+ +...+-.++.-+|.+++|+|+.++..-....+++...+...|+.+|+||+|++-
T Consensus 200 nilDTPGHVn--------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLi 263 (971)
T KOG0468 200 NILDTPGHVN--------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLI 263 (971)
T ss_pred EEECCCCCCC--------CHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 5525887555--------068888886523637999982257052099999998742676799974167899
No 282
>KOG1532 consensus
Probab=98.99 E-value=7.5e-10 Score=83.62 Aligned_cols=198 Identities=23% Similarity=0.260 Sum_probs=114.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC---CEE---------EECCCCC----CEEE--------------EEEEEEE-------
Q ss_conf 8998338998688999998689---202---------1058888----6021--------------2789997-------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA---KVS---------IVTHKVQ----TTRS--------------IVRGIVS------- 66 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~---~vs---------ivS~k~~----TTr~--------------~i~gi~~------- 66 (311)
.+.++|..++||+|++-+|... +-+ +|.+-|- --|+ +.-||.|
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~t 100 (366)
T KOG1532 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFAT 100 (366)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 79999447788413999999998623699808867888854888667756654309999998388998640335899998
Q ss_pred ------------ECCEEEEEEECCCCHHHCCC--CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC-----CHHHHHHHHH
Q ss_conf ------------39948999987984010123--5753210023455553210011000010000-----0001223454
Q gi|254780941|r 67 ------------EKESQIVFLDTPGIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKV-----NIHDLLKEIA 127 (311)
Q Consensus 67 ------------~~~~qiifvDTPG~~~~~~~--l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~-----~~~~il~~l~ 127 (311)
.+..+.+++||||-++.-.. .+. .+-.++.+.. --++.||+|..+...+ ........+-
T Consensus 101 k~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGs-IIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSily 178 (366)
T KOG1532 101 KFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGS-IITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILY 178 (366)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCC-CHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7899999999742204779974888068998427850-1586676139-8599999447767884169988999999998
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHH--------------------------HCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42872025787211010434578888641--------------------------0012334311000138742678999
Q gi|254780941|r 128 KRSSRLILILNKIDCVKPERLLEQAEIAN--------------------------KLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 128 ~~~~p~IiVlNKiDlv~~~~l~~~~~~~~--------------------------~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
+...|.|+|+||+|+.+.+-.++++..+. +++.--.++-|||.+|.|.+++...
T Consensus 179 ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~a 258 (366)
T KOG1532 179 KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTA 258 (366)
T ss_pred HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH
T ss_conf 62687699971434456188999999999999999763032667766547989999983175577740457867889999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 998366223568964334302567899875999999730045
Q gi|254780941|r 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEI 223 (311)
Q Consensus 182 L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~Ei 223 (311)
+.+.+.|-.-.|-++.---+...-...|--+++=++.|.+..
T Consensus 259 v~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm 300 (366)
T KOG1532 259 VDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDM 300 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999976368999999998788775034588987414
No 283
>KOG2484 consensus
Probab=98.99 E-value=2.6e-10 Score=86.54 Aligned_cols=61 Identities=31% Similarity=0.465 Sum_probs=52.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHH
Q ss_conf 5121899833899868899999868920210588886021278999739948999987984010
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~ 83 (311)
.+|-.|+|+|.|||||||++|+|..+++|.|.+.|+.||.- .++ ..+.++-|+|.||++-+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~sm-qeV--~Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSM-QEV--KLDKKIRLLDSPGIVPP 310 (435)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH-HHE--ECCCCCEECCCCCEEEC
T ss_conf 74168643248887716999998774046677875500354-530--05677323047863206
No 284
>KOG2485 consensus
Probab=98.98 E-value=8.4e-10 Score=83.27 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=51.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf 8998338998688999998689-----20210588886021278999739948999987984010123575321002
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLS 95 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~ 95 (311)
+|-++|-||||||||+|++... +.+.|.++||.||..-.-+.-.++-.+-++||||+..++-.-.+.+.+.+
T Consensus 145 ~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLA 221 (335)
T KOG2485 145 NVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLA 221 (335)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEHHHEEECCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 69997389888088999999887653000010688885223121257436896588668875798877977754566
No 285
>KOG1954 consensus
Probab=98.98 E-value=3.1e-09 Score=79.63 Aligned_cols=127 Identities=19% Similarity=0.364 Sum_probs=86.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEE--EECCCCCCEEEEEEEEEEE------CCE------------------------
Q ss_conf 18998338998688999998689202--1058888602127899973------994------------------------
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVS--IVTHKVQTTRSIVRGIVSE------KES------------------------ 70 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vs--ivS~k~~TTr~~i~gi~~~------~~~------------------------ 70 (311)
..|-++|.-..||||++|.|+.+..- -+.+-|-|-|..+ +..- ++.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~--vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIA--VMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEE--EEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 44899724666603999998717787554689997530689--9855865666786256468775165666679999988
Q ss_pred -----------EEEEEECCCCHHHCCC-CCCC--CCCHHHHHHHHHHHHCCCCHHHH-HHHCCHHHHHHHHHHCCCCCEE
Q ss_conf -----------8999987984010123-5753--21002345555321001100001-0000000122345442872025
Q gi|254780941|r 71 -----------QIVFLDTPGIFNAKDS-YHKL--MIRLSWSTIKHADIVCLVVDSHR-ELKVNIHDLLKEIAKRSSRLIL 135 (311)
Q Consensus 71 -----------qiifvDTPG~~~~~~~-l~~~--~~~~~~~~l~~aDiil~VvDa~~-~~~~~~~~il~~l~~~~~p~Ii 135 (311)
++.+|||||+.+.++. +.+. +.....=-++.||.|+++.|+.+ .++++...++..++....++=+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHHCCCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 77338756550044423675320122201236780889999997456899972466456667899999986188640688
Q ss_pred EEEECCCHHHHHHHHH
Q ss_conf 7872110104345788
Q gi|254780941|r 136 ILNKIDCVKPERLLEQ 151 (311)
Q Consensus 136 VlNKiDlv~~~~l~~~ 151 (311)
|+||.|.++.++++..
T Consensus 217 VLNKADqVdtqqLmRV 232 (532)
T KOG1954 217 VLNKADQVDTQQLMRV 232 (532)
T ss_pred EECCCCCCCHHHHHHH
T ss_conf 8303244379999999
No 286
>PTZ00099 rab6; Provisional
Probab=98.97 E-value=1.2e-09 Score=82.35 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=76.7
Q ss_pred CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHH
Q ss_conf 94899998798401012357532100234555532100110000100000-001223454---42872025787211010
Q gi|254780941|r 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVK 144 (311)
Q Consensus 69 ~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~ 144 (311)
..++-+.||+|- +.+.......+.+|+++++|.|.++..+-. ....++.+. ..+.|+++|.||+|+.+
T Consensus 28 ~v~l~IWDTAGq--------E~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~ 99 (176)
T PTZ00099 28 PVRLQLWDTAGQ--------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEECCCC--------CCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf 999999979986--------341357688707986799985042077899999999999985388774399985565586
Q ss_pred HHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 4345-788886410012334311000138742678999998366223
Q gi|254780941|r 145 PERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 145 ~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~ 190 (311)
...+ .+....+.+..+. ..|.+||++|.||+++.+.|++.++.-.
T Consensus 100 ~r~V~~ee~~~~A~~~~~-~f~EtSAktg~nV~e~F~~la~~i~~~~ 145 (176)
T PTZ00099 100 LRKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred HCCCCHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHHHHHHCCHH
T ss_conf 168599999999998599-9999848999498999999999860802
No 287
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.97 E-value=8.2e-10 Score=83.36 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=83.2
Q ss_pred EECCCCCCHHHHHHHHH------CCCEEEECCCCCC----------EEEEE-----------------------------
Q ss_conf 83389986889999986------8920210588886----------02127-----------------------------
Q gi|254780941|r 27 LVGATNAGKSTLVNRFV------GAKVSIVTHKVQT----------TRSIV----------------------------- 61 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~------g~~vsivS~k~~T----------Tr~~i----------------------------- 61 (311)
++|+|++||||+++++. |+++.+|-==|.. .|+-+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPNGali~~me~l~~~~d 80 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPNGALTVAMDFGRITLD 80 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98989898899999999999977997599978986658999877717874679999998298973899999999999999
Q ss_pred --EEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH-HHHHCCCCHHHHHHHCC-----HHHHHHHHHHCCCCC
Q ss_conf --8999739948999987984010123575321002345555-32100110000100000-----001223454428720
Q gi|254780941|r 62 --RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH-ADIVCLVVDSHRELKVN-----IHDLLKEIAKRSSRL 133 (311)
Q Consensus 62 --~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~-aDiil~VvDa~~~~~~~-----~~~il~~l~~~~~p~ 133 (311)
...+ ..+..++++||||-++--. .+..+ ....+.+.. .=++++++|+..-.++. ....+..+.+.+.|.
T Consensus 81 ~l~~~l-~~~~~y~l~DtPGQiElf~-~~~~~-~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~m~~l~lP~ 157 (234)
T pfam03029 81 WLLEEL-EYEDDYYLFDTPGQIELFT-HWDSL-ARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSIMLRLGLPF 157 (234)
T ss_pred HHHHHH-CCCCCEEEEECCCCEEEEE-CCHHH-HHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999985-2557769983698357654-00269-99999971287389998425774688889999999999999748994
Q ss_pred EEEEEECCCHHHHHHHHH----------------------HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 257872110104345788----------------------8864100123343110001387426789999983
Q gi|254780941|r 134 ILILNKIDCVKPERLLEQ----------------------AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 134 IiVlNKiDlv~~~~l~~~----------------------~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
+.|+||+|+++.+..++. .+.+......-...|+|+.++.|++.|+..+-+.
T Consensus 158 vnvlsK~Dl~~~~~~l~~~~d~~~l~~~l~~~~~~L~~~l~~lledf~lv~~f~~ls~~~~~s~~~ll~~ID~a 231 (234)
T pfam03029 158 VVALNKFDLLSLEFALKWFTDPDDLQLLLELDYRYLNEAIRLALDLFYLVPRFLCDARETGESMEDLLTLIDEA 231 (234)
T ss_pred EEEECCHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 43100041354244577752878898887887999999999999872573661465688602799999998877
No 288
>KOG0466 consensus
Probab=98.94 E-value=1.3e-09 Score=82.09 Aligned_cols=167 Identities=23% Similarity=0.343 Sum_probs=102.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-----------EEE---------------ECCCCCCEEEEEEEEE----------
Q ss_conf 2189983389986889999986892-----------021---------------0588886021278999----------
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAK-----------VSI---------------VTHKVQTTRSIVRGIV---------- 65 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~-----------vsi---------------vS~k~~TTr~~i~gi~---------- 65 (311)
.-.|+-+|..-.||||++.++.|-. +.| ..++|..-|. .|.-
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s--~gS~k~d~~~c~~~ 115 (466)
T KOG0466 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS--FGSSKEDRPPCDRP 115 (466)
T ss_pred EEEECCEECCCCCCCEEEEEECCCEEEEEHHHHHCCEEEEECCCCCEEEECCCCCCCCCCHHHC--CCCCCCCCCCCCCC
T ss_conf 4430211100257402445404614887133442152688513544578558988999663020--47899999986568
Q ss_pred -EECCE----EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH-HCCHHHHHHHHHHCCCC-CEEEEE
Q ss_conf -73994----899998798401012357532100234555532100110000100-00000122345442872-025787
Q gi|254780941|r 66 -SEKES----QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILN 138 (311)
Q Consensus 66 -~~~~~----qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~-~~~~~~il~~l~~~~~p-~IiVlN 138 (311)
..++. ...|+|.|| +..++...++...-.|.+++++-+++.. .++..+.+..+.-++.+ ++++-|
T Consensus 116 g~~~~~klvRHVSfVDCPG--------HDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQN 187 (466)
T KOG0466 116 GCEGKMKLVRHVSFVDCPG--------HDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQN 187 (466)
T ss_pred CCCCCEEEEEEEEECCCCC--------HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEEEEC
T ss_conf 9987458999877514796--------18899887432677543341010488898985066788877863141899821
Q ss_pred ECCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCC
Q ss_conf 2110104345788886410012-----3343110001387426789999983662--2356896433
Q gi|254780941|r 139 KIDCVKPERLLEQAEIANKLVF-----IEKTFMVSATKGHGCDDVLNYLCSTLPL--APWVYSADQI 198 (311)
Q Consensus 139 KiDlv~~~~l~~~~~~~~~~~~-----~~~i~~ISAk~g~Gid~L~~~L~~~lpe--~~~~y~~~~~ 198 (311)
|+|+++.++-.++.+.+.++.. -..++|+||.-++|+|.+.+||.++.|. +++.-|+..+
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlI 254 (466)
T KOG0466 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLI 254 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 2335437788988999999974565579952101364336767999999861898820147897289
No 289
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.7e-09 Score=79.96 Aligned_cols=150 Identities=25% Similarity=0.350 Sum_probs=101.3
Q ss_pred HHHHHHHCCCCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEE---EEEECCEEEEEEECCC
Q ss_conf 77654101433243685121-8998338998688999998689202105888860212789---9973994899998798
Q gi|254780941|r 4 GEITFFNEHKDFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG---IVSEKESQIVFLDTPG 79 (311)
Q Consensus 4 ~e~~~~~~~~~~~~~~~ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~g---i~~~~~~qiifvDTPG 79 (311)
.|--+.-++.|.++++--.. .||++|+|+.|||||+.+|+..-- .-|-+.|.| +.......+.|...|.
T Consensus 50 ~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t-------k~ti~~i~GPiTvvsgK~RRiTflEcp~ 122 (1077)
T COG5192 50 EEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT-------KQTIDEIRGPITVVSGKTRRITFLECPS 122 (1077)
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-------HHHHHCCCCCEEEEECCEEEEEEEECHH
T ss_conf 554004642257855589975899636998874689999999987-------7542036786478615635789886717
Q ss_pred CHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHHHH-----
Q ss_conf 40101235753210023455553210011000010000000122345442872-025787211010434578888-----
Q gi|254780941|r 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKPERLLEQAE----- 153 (311)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDlv~~~~l~~~~~----- 153 (311)
= ++ .|+. ..+-||++|+++|++-++.-...+++..+...+.| ++.|++..|+.++...+..+.
T Consensus 123 D------l~-~miD----vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh 191 (1077)
T COG5192 123 D------LH-QMID----VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH 191 (1077)
T ss_pred H------HH-HHHH----HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8------88-8876----88752135788636667042488999998664897247888621133583789999988766
Q ss_pred -HHHHCCCCCCCCCCCCCC
Q ss_conf -641001233431100013
Q gi|254780941|r 154 -IANKLVFIEKTFMVSATK 171 (311)
Q Consensus 154 -~~~~~~~~~~i~~ISAk~ 171 (311)
.+.+.+.-...|++|...
T Consensus 192 RfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 192 RFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHCCCCEEEEECCCC
T ss_conf 6799873774489860201
No 290
>TIGR00650 MG442 GTP-binding conserved hypothetical protein; InterPro: IPR005289 This is a GTP-binding domain, that was found in proteins from various families (Ras GTPase superfamily, HSR1-related GTP-binding protein), which perform different functions.; GO: 0005525 GTP binding.
Probab=98.92 E-value=1.4e-09 Score=81.75 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred ECCCCCCHH-------------HHHHHHHCC------------------------------CEEEECCCCCCEEEEE
Q ss_conf 338998688-------------999998689------------------------------2021058888602127
Q gi|254780941|r 28 VGATNAGKS-------------TLVNRFVGA------------------------------KVSIVTHKVQTTRSIV 61 (311)
Q Consensus 28 vG~pN~GKS-------------TL~N~l~g~------------------------------~vsivS~k~~TTr~~i 61 (311)
+|.|||||| ||+|+|+++ +.+.|+++||+||..|
T Consensus 1 ~G~PNVGKSkieYktaievaaGsliN~L~~kr~d~avRaikYLkeRkLGRatFLPLDRieG~~a~~~~~aG~T~Rai 77 (123)
T TIGR00650 1 IGVPNVGKSKIEYKTAIEVAAGSLINLLLNKRMDDAVRAIKYLKERKLGRATFLPLDRIEGNEAKVADRAGVTGRAI 77 (123)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEECCCCCCCCEEE
T ss_conf 98689876421023455677788999986212342788888765202452001644212574666517898400013
No 291
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.92 E-value=5.6e-09 Score=77.94 Aligned_cols=147 Identities=19% Similarity=0.276 Sum_probs=84.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCE----------EEEEEEEEEECCE-----------------
Q ss_conf 18998338998688999998689-----202105888860----------2127899973994-----------------
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQTT----------RSIVRGIVSEKES----------------- 70 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~TT----------r~~i~gi~~~~~~----------------- 70 (311)
..|.+.|+|++||+||+-+++.. +++.+..=-.|+ -.++.++.|-+.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 89996179986789999999999975277689964040065599997377980687403876588678899999998631
Q ss_pred ----EEEEEECCC-CHHHCCCCCCCCCCHHHHHHHHHH-HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf ----899998798-401012357532100234555532-10011000010000000122345442872025787211010
Q gi|254780941|r 71 ----QIVFLDTPG-IFNAKDSYHKLMIRLSWSTIKHAD-IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 71 ----qiifvDTPG-~~~~~~~l~~~~~~~~~~~l~~aD-iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
.++|+-+.| +.-+ .+..-.| +-++|+|++.+.... ...--.+.+. =++|+||.|++.
T Consensus 94 ~~~~Dll~iEs~GNL~~~-------------~sp~L~d~~~v~VidvteGe~~P-~K~gP~i~~a---DllVInK~DLa~ 156 (202)
T COG0378 94 FPDLDLLFIESVGNLVCP-------------FSPDLGDHLRVVVIDVTEGEDIP-RKGGPGIFKA---DLLVINKTDLAP 156 (202)
T ss_pred CCCCCEEEEECCCCEECC-------------CCCCHHHCEEEEEEECCCCCCCC-CCCCCCEEEE---EEEEEEHHHHHH
T ss_conf 776778999237643244-------------68041304699999878888876-5579964674---189985677387
Q ss_pred HHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 434--578888641001233431100013874267899999836
Q gi|254780941|r 145 PER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 145 ~~~--l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
.-. +....+...+..+-.+++.+|+++|+|++++.+++...+
T Consensus 157 ~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 157 YVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 72866999999999849999889984787868999999987640
No 292
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=98.91 E-value=1.7e-09 Score=81.26 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=64.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHH-C-CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 345555321001100001000-0-00012234544287202578721101043457888864100123343110001387
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELK-V-NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~-~-~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
.-.+.++|-+++|+-+.++.. . ....++-.....+.|.++|+||+|+++++......+.+..+ + .+++++|+.++.
T Consensus 83 RP~VANvDq~liV~s~~~P~~~~~~LDRfLv~ae~~~i~~vivlnK~DL~~~~e~~~~~~~~~~~-G-Y~~i~iS~~~~~ 160 (351)
T PRK12289 83 RPPIANVDQILLVFALAEPPLDPWQLSRFLVKAESTGLEIQLCLNKADLVSPTQQQQWQDRLAQW-G-YQPLFISVEQGI 160 (351)
T ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHC-C-CCEEEEECCCCC
T ss_conf 77756703599999657899887799999999998799789998657749989999999999977-9-828999678996
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 4267899999836
Q gi|254780941|r 174 GCDDVLNYLCSTL 186 (311)
Q Consensus 174 Gid~L~~~L~~~l 186 (311)
|+++|.+.|....
T Consensus 161 gl~~L~~~L~~k~ 173 (351)
T PRK12289 161 GLEALLKQLRNKI 173 (351)
T ss_pred CHHHHHHHHCCCE
T ss_conf 8999999875986
No 293
>KOG1143 consensus
Probab=98.89 E-value=1.2e-09 Score=82.35 Aligned_cols=181 Identities=23% Similarity=0.270 Sum_probs=113.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCE---------EE-----------ECCCCCCEE-EEEEE-EEEEC-----------C
Q ss_conf 1899833899868899999868920---------21-----------058888602-12789-99739-----------9
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKV---------SI-----------VTHKVQTTR-SIVRG-IVSEK-----------E 69 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~v---------si-----------vS~k~~TTr-~~i~g-i~~~~-----------~ 69 (311)
-.||++|--.+|||||+--|+...+ -+ +|...+-+- ...+| ++++. .
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf 99998527656722366554105314788706630110636540576320010100536534300223204599987410
Q ss_pred E-EEEEEECCCCHHHCCCCCCCCCCHHHHHHHH--HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 4-8999987984010123575321002345555--321001100001000000012234544287202578721101043
Q gi|254780941|r 70 S-QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH--ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 (311)
Q Consensus 70 ~-qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~--aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~ 146 (311)
. -+.|+|.+|.++ ..+.+...+.+ .+..++|+.|+.++.....+.+..+...+.|++++++|+|++++.
T Consensus 248 SKlvTfiDLAGh~k--------Y~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143 248 SKLVTFIDLAGHAK--------YQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred CCEEEEEECCCCHH--------HHEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCH
T ss_conf 23388765044223--------1304522003679862799998688876540888889997178769999840123632
Q ss_pred HHHHHHHHHH----------------------------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 4578888641----------------------------001233431100013874267899999836622356896433
Q gi|254780941|r 147 RLLEQAEIAN----------------------------KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 (311)
Q Consensus 147 ~l~~~~~~~~----------------------------~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~ 198 (311)
.+....+.+. -..+..+||.+|+.+|+|++-|..+|. -||++-.--..+++
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn-~Lsp~~~~~e~~~L 398 (591)
T KOG1143 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN-CLSPAGTAEERIQL 398 (591)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH-HCCCCCCHHHHHHH
T ss_conf 17899999998874237632634850507887888875368811489985047632669999986-43876772779998
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 43025678998759
Q gi|254780941|r 199 SDLPMFHFTAEITR 212 (311)
Q Consensus 199 Td~~~~~~i~EiIR 212 (311)
-.++..|.+.||-|
T Consensus 399 ~q~~~eFqvdEiy~ 412 (591)
T KOG1143 399 VQLPAEFQVDEIYN 412 (591)
T ss_pred HCCCCEEEHHHEEC
T ss_conf 66762266747056
No 294
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.88 E-value=1.9e-09 Score=80.97 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHHCCCCHHHHHH-HC-CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 55532100110000100-00-00012234544287202578721101043457888864100123343110001387426
Q gi|254780941|r 99 IKHADIVCLVVDSHREL-KV-NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~-~~-~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
..++|.++.|+.+.++. .. ....++-.....+.+.++|+||+|++++.........+.. .+ .+++++||+++.|++
T Consensus 76 aANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~-~g-y~v~~~S~~~~~g~~ 153 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGEGLD 153 (287)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHC-CC-CEEEEEECCCCCCHH
T ss_conf 9726689999526899899899999999999779968999986221994899999999872-99-849999668985889
Q ss_pred HHHHHHHHH
Q ss_conf 789999983
Q gi|254780941|r 177 DVLNYLCST 185 (311)
Q Consensus 177 ~L~~~L~~~ 185 (311)
+|++++...
T Consensus 154 ~L~~~l~~k 162 (287)
T cd01854 154 ELREYLKGK 162 (287)
T ss_pred HHHHHHCCC
T ss_conf 999874798
No 295
>KOG0087 consensus
Probab=98.87 E-value=1.1e-08 Score=76.08 Aligned_cols=147 Identities=21% Similarity=0.234 Sum_probs=89.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCC-C---CEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 998338998688999998689202105888-8---60212789997399--48999987984010123575321002345
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKV-Q---TTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~-~---TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
|+++|-|+||||-|+-+++..-.++-|.-. + -||. .+.++ ....+.||.|--+ .+. .....
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t-----~~vd~k~vkaqIWDTAGQER-----yrA---itSaY 83 (222)
T KOG0087 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRT-----VNVDGKTVKAQIWDTAGQER-----YRA---ITSAY 83 (222)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEE-----EEECCCEEEEEEECCCCHHH-----HCC---CCCHH
T ss_conf 999578765536778774335467566662468877500-----23568178876532611456-----500---11122
Q ss_pred HHHHHHHCCCCHHHHHHH-CCHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 555321001100001000-000012234544---28720257872110104345-7888864100123343110001387
Q gi|254780941|r 99 IKHADIVCLVVDSHRELK-VNIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~-~~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
...|-.+++|.|.++..+ +.....+.+|+. .+.++++|-||+|+.....+ .+......+..+ -..+.+||+.+.
T Consensus 84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nIvimLvGNK~DL~~lraV~te~~k~~Ae~~~-l~f~EtSAl~~t 162 (222)
T KOG0087 84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG-LFFLETSALDAT 162 (222)
T ss_pred HCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHHCC-CEEEEECCCCCC
T ss_conf 1344036999950467788889999999985588771799961220454334644566566897528-547870034443
Q ss_pred CHHHHHHHHHHH
Q ss_conf 426789999983
Q gi|254780941|r 174 GCDDVLNYLCST 185 (311)
Q Consensus 174 Gid~L~~~L~~~ 185 (311)
|++...+.+...
T Consensus 163 NVe~aF~~~l~~ 174 (222)
T KOG0087 163 NVEKAFERVLTE 174 (222)
T ss_pred CHHHHHHHHHHH
T ss_conf 288999999999
No 296
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.87 E-value=3.1e-09 Score=79.63 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=34.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC---CEEEECCC----CCCEEEEEEEEEEE-CCEEEEEEECCCCHH
Q ss_conf 1218998338998688999998689---20210588----88602127899973-994899998798401
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGA---KVSIVTHK----VQTTRSIVRGIVSE-KESQIVFLDTPGIFN 82 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~---~vsivS~k----~~TTr~~i~gi~~~-~~~qiifvDTPG~~~ 82 (311)
+....+++|.++||||||+|+|.++ ++.-+|.+ -||||+..+ +.. .+.. ++|||||.+
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l--~~l~~gG~--iiDTPGf~~ 228 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVEL--FPLPGGGW--IIDTPGFRS 228 (301)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEE--EECCCCCE--EEECCCCCC
T ss_conf 5884999888877699988741721211344210447898876324899--98389988--972899771
No 297
>KOG0098 consensus
Probab=98.87 E-value=1.7e-08 Score=74.79 Aligned_cols=150 Identities=22% Similarity=0.248 Sum_probs=93.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEE--EEEECCEE--EEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 998338998688999998689202105888860212789--99739948--99998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG--IVSEKESQ--IVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~g--i~~~~~~q--iifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
+.++|-..||||.|+-+.+..+--++.+ +|--.-.| .++.++.| +-+.||.|. +.+.....+...
T Consensus 9 yIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGq--------e~frsv~~syYr 77 (216)
T KOG0098 9 YIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQ--------ESFRSVTRSYYR 77 (216)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCC---CEEEEEECEEEEEECCCEEEEEEEECCCC--------HHHHHHHHHHHC
T ss_conf 9998777732889999985157654534---30224402369888581689999755786--------769998888844
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHHC---CCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 532100110000100000-00122345442---8720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAKR---SSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~~---~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++-.+|+|.|.++..+-. ....+..++.. +.-++++-||+|+..+..+ .+.-+.+.+..+. -.+..||+++.|+
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCC-EEEHHHHHHHHHH
T ss_conf 676238999713066677899999999972678838999744144210234658889999997395-4441244554239
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
++..-.....+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 298
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=98.87 E-value=2.7e-09 Score=79.96 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=55.6
Q ss_pred HHHHHHHCCCCHHHHHHHCC-HHHHHHHHHHCCCCCEEEEEECCCHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 55532100110000100000-001223454428720257872110104-3457888864100123343110001387426
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~-~~~il~~l~~~~~p~IiVlNKiDlv~~-~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
..++|.+++|.-++..+... ...++-.....+.+.++|+||+|++++ +......+.+ ..-..++.+||.++.|++
T Consensus 109 AANiD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~d~~~~~~~~~~~---~~g~~v~~vSa~~~~gl~ 185 (353)
T PRK01889 109 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCEDVEEKIAEVEAL---APGVPVLAVNALDGEGVD 185 (353)
T ss_pred EECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHH---CCCCEEEEEECCCCCCHH
T ss_conf 97176899995289997978999999999986996799996655667999999999985---599759999789984789
Q ss_pred HHHHHHHH
Q ss_conf 78999998
Q gi|254780941|r 177 DVLNYLCS 184 (311)
Q Consensus 177 ~L~~~L~~ 184 (311)
.|..+|..
T Consensus 186 ~L~~~l~~ 193 (353)
T PRK01889 186 ALQAWLKP 193 (353)
T ss_pred HHHHHHHC
T ss_conf 99998634
No 299
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=98.85 E-value=2.8e-09 Score=79.88 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=39.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---EEEECCC----CCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 89983389986889999986892---0210588----88602127899973994899998798401
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK---VSIVTHK----VQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~---vsivS~k----~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
..+++|.++||||||+|+|++.. ...||.+ -||||+..+-.+..+. .++|||||.+
T Consensus 37 ~sv~~G~SGVGKSTLiN~L~~~~~~~t~~iS~~~~rGkHTTt~~~l~~l~~gg---~iiDTPG~r~ 99 (161)
T pfam03193 37 TSVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGG---LLIDTPGFRE 99 (161)
T ss_pred EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC---EEEECCCCCC
T ss_conf 59998899988999998856344357775358863885112113799807995---8985898762
No 300
>KOG0467 consensus
Probab=98.81 E-value=2.3e-08 Score=73.93 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=84.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE-------EEEEE--------EEECCEEEEEEECCCCHHHCCCC
Q ss_conf 1899833899868899999868920210588886021-------27899--------97399489999879840101235
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-------IVRGI--------VSEKESQIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~-------~i~gi--------~~~~~~qiifvDTPG~~~~~~~l 87 (311)
-.++++-.-..||+||..+|+.++=-|-|.-+|+-|. ..+|| +-.+++-+.|+|+||..+
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd----- 84 (887)
T KOG0467 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD----- 84 (887)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCC-----
T ss_conf 589999996488532577787506674153356066210462566616244313111013765899855898645-----
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 75321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
+...+.++..-+|..+++||+.++...+...++.+.-..+...++|+||+|.+
T Consensus 85 ---f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467 85 ---FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred ---HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf ---06553266650477189996002545538999999997167459997316667
No 301
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.81 E-value=5.2e-09 Score=78.14 Aligned_cols=85 Identities=26% Similarity=0.312 Sum_probs=68.8
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 210011000010000000122345442-8720257872110104345788886410012334311000138742678999
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~-~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
|+|++|+||..+....+..+...+.+. ++|+++|+||+|+++++...+....+.+.. ....+++||.++.|++.+.+.
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~~~~~~~~w~~~~~~~~-~~~~~~~S~~~~~~~~~~~~~ 79 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKESA 79 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEHHHCCCCCHHHHHHH
T ss_conf 9899999687999988999999998658994899976734589899999999999629-985167110267456889999
Q ss_pred HHHHCCC
Q ss_conf 9983662
Q gi|254780941|r 182 LCSTLPL 188 (311)
Q Consensus 182 L~~~lpe 188 (311)
+...+..
T Consensus 80 ~~~~~~~ 86 (155)
T cd01849 80 FTKQTNS 86 (155)
T ss_pred HHHHHHH
T ss_conf 9987156
No 302
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=98.80 E-value=4.2e-09 Score=78.75 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCHHHHH-HHC-CHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 5553210011000010-000-000122345442872025787211010434-5788886410012334311000138742
Q gi|254780941|r 99 IKHADIVCLVVDSHRE-LKV-NIHDLLKEIAKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 99 l~~aDiil~VvDa~~~-~~~-~~~~il~~l~~~~~p~IiVlNKiDlv~~~~-l~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
..++|.++.|+-+.++ +.. ....++-.....+.+.++|+||+|+++... .....+.+... + .+++++||.++.|+
T Consensus 78 AANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~y~~~-g-y~v~~~S~~~~~g~ 155 (298)
T PRK00098 78 AANVDQAVIVFAAKEPDFSTDLLDRFLVLAEANDIKPIIVLNKIDLVDDLEEARERLALYRAI-G-YDVLELSAKEGPGL 155 (298)
T ss_pred EEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC-C-CCEEEEECCCCCCH
T ss_conf 874478999985688989989999999999986995899964245647799999999999878-9-97899968999899
Q ss_pred HHHHHHHHHH
Q ss_conf 6789999983
Q gi|254780941|r 176 DDVLNYLCST 185 (311)
Q Consensus 176 d~L~~~L~~~ 185 (311)
++|.++|...
T Consensus 156 ~~L~~~l~~k 165 (298)
T PRK00098 156 DELKPLLAGK 165 (298)
T ss_pred HHHHHHHCCC
T ss_conf 9999985798
No 303
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.78 E-value=6e-09 Score=77.77 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=82.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 18998338998688999998689-----2021058888602127899973994899998798401012357532100234
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
.-+-++|-|++||+||+-+.+.. +++.+---.+|+++.-+ +..-+.+.+=+.|-|- =-+...|+..+..
T Consensus 105 ~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~DA~R--I~~~Gv~avQInTG~~----CHLDA~MV~~al~ 178 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR--IRATGTPAIQVNTGKG----CHLDAQMIADAAP 178 (290)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH--HHHCCCCEEEECCCCC----CCCCHHHHHHHHH
T ss_conf 899930699878899999999987336757999604235667999--9976995899547997----6759999999998
Q ss_pred HHHHHHHHCCCC--------HHHHHHHCCHHHH-HHHHHHCCC----------CCEEEEEECCCHHHH--HHHHHHHHHH
Q ss_conf 555532100110--------0001000000012-234544287----------202578721101043--4578888641
Q gi|254780941|r 98 TIKHADIVCLVV--------DSHRELKVNIHDL-LKEIAKRSS----------RLILILNKIDCVKPE--RLLEQAEIAN 156 (311)
Q Consensus 98 ~l~~aDiil~Vv--------Da~~~~~~~~~~i-l~~l~~~~~----------p~IiVlNKiDlv~~~--~l~~~~~~~~ 156 (311)
.+.-.++-++.| +|.-.+.+...-. +.--.-.++ --++++||+|++.-- ++....+...
T Consensus 179 ~l~l~~~dllfIENVGNLVCPA~FDLGE~~kVvvlSVtEGeDKPlKYP~mF~~ad~vlinKiDLlp~~dFD~~~~~~~~~ 258 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAR 258 (290)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCEEEEEHHHHHHHCCCCHHHHHHHHH
T ss_conf 48987798999812788435512036776179999706888864447667642578998656512202889999999999
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00123343110001387426789999983
Q gi|254780941|r 157 KLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 157 ~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
+..+-.+||++||++|+|+++..+||.+.
T Consensus 259 ~vNp~~~v~~vSa~tGeGld~W~~WL~~~ 287 (290)
T PRK10463 259 EVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 86989858997568887899999999997
No 304
>KOG0080 consensus
Probab=98.78 E-value=3.2e-08 Score=73.07 Aligned_cols=158 Identities=23% Similarity=0.212 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE---EEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 899833899868899999868920210588886021---27899973--9948999987984010123575321002345
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS---IVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~---~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
.|.++|..+||||||+-+++....-.-++ ||-- .+. .+.. ....+.+.||+|- +++...+-+.
T Consensus 13 KiLlIGeSGVGKSSLllrFv~~~fd~~~~---~tIGvDFkvk-~m~vdg~~~KlaiWDTAGq--------ErFRtLTpSy 80 (209)
T KOG0080 13 KILLIGESGVGKSSLLLRFVSNTFDDLHP---TTIGVDFKVK-VMQVDGKRLKLAIWDTAGQ--------ERFRTLTPSY 80 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCC---CEEEEEEEEE-EEEECCCEEEEEEEECCCH--------HHHHCCCHHH
T ss_conf 99998168765789999987643676677---3443457889-9987582678998743452--------7661168767
Q ss_pred HHHHHHHCCCCHHHHHHHCCHH-HHHHHHH----HCCCCCEEEEEECCCHHHHHH--HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 5553210011000010000000-1223454----428720257872110104345--78888641001233431100013
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVNIH-DLLKEIA----KRSSRLILILNKIDCVKPERL--LEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~~~-~il~~l~----~~~~p~IiVlNKiDlv~~~~l--~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
...|..+++|.|.+...+-.-+ ..++++. +.+.-.++|-||+|.-....+ .+-.....+ +. .-.+..||++
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-h~-~LFiE~SAkt 158 (209)
T KOG0080 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-HR-CLFIECSAKT 158 (209)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHCCCCCHHHHHHHHHH-HC-CEEEECCHHH
T ss_conf 455750699997122356775999999887644881376765425445012021348887899986-08-2789825434
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 874267899999836622356896
Q gi|254780941|r 172 GHGCDDVLNYLCSTLPLAPWVYSA 195 (311)
Q Consensus 172 g~Gid~L~~~L~~~lpe~~~~y~~ 195 (311)
.+|+..-.+.+.++.-+.|.+..+
T Consensus 159 ~~~V~~~FeelveKIi~tp~l~~~ 182 (209)
T KOG0080 159 RENVQCCFEELVEKIIETPSLWEE 182 (209)
T ss_pred HCCHHHHHHHHHHHHHCCCCHHHC
T ss_conf 301888999999998648430102
No 305
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.77 E-value=7.6e-09 Score=77.08 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+..++.++.+|+|+.|+||+.+.......+.+.+ .++|.++|+||+|+++++...+..+.+.... ..++++||+++
T Consensus 13 ~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~--~~~~~~sa~~~ 88 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEQKG--IKALAINAKKG 88 (276)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEHHCCC
T ss_conf 9999998759999999867788786897599986--6996799973434599999999999998439--91898643074
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 74267899999836622
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~ 189 (311)
.|+..|.+.+.+.+++.
T Consensus 89 ~~~~~l~~~~~~~~~~~ 105 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 53899999999999998
No 306
>KOG0090 consensus
Probab=98.77 E-value=1.3e-08 Score=75.68 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=70.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234555532
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
-|-++|+.++||++|+-.|+-... ....|--.+..|.+-.++....+||.||..+-+.++.+++... ..+-
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~-----~~ak 110 (238)
T KOG0090 40 AVLLVGLSDSGKTSLFTQLITGSH----RGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHN-----YSAK 110 (238)
T ss_pred CEEEEECCCCCCEEEEEEHHCCCC----CCEEEEECCCEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCC-----CCCE
T ss_conf 689993278983355420013873----6703210466135763686238875799588999999873465-----5221
Q ss_pred HHCCCCHHHHHHH---CC---HHHHHHHH--HHCCCCCEEEEEECCCHH
Q ss_conf 1001100001000---00---00122345--442872025787211010
Q gi|254780941|r 104 IVCLVVDSHRELK---VN---IHDLLKEI--AKRSSRLILILNKIDCVK 144 (311)
Q Consensus 104 iil~VvDa~~~~~---~~---~~~il~~l--~~~~~p~IiVlNKiDlv~ 144 (311)
.++||||+..... .. ...++... .+...|++++-||-|+..
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
T ss_conf 5999983322460067999999999986012347998899955522321
No 307
>KOG0095 consensus
Probab=98.77 E-value=5.5e-08 Score=71.53 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=98.1
Q ss_pred CCCCCEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE---EEEEE-EEECCEEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 6851218-99833899868899999868920210588886021---27899-9739948999987984010123575321
Q gi|254780941|r 18 DNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS---IVRGI-VSEKESQIVFLDTPGIFNAKDSYHKLMI 92 (311)
Q Consensus 18 ~~~ksg~-VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~---~i~gi-~~~~~~qiifvDTPG~~~~~~~l~~~~~ 92 (311)
|++|..| |++||..+|||+-|+.+++.--. -|-.+.|-- .|..+ ++.+...+-+.||+|- +++.
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglf---ppgqgatigvdfmiktvev~gekiklqiwdtagq--------erfr 70 (213)
T KOG0095 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ--------ERFR 70 (213)
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHCCCC---CCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCH--------HHHH
T ss_conf 5420267899973577673300445522678---9998766423379999998780899998413256--------8888
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHC-CHHHH---HHHHHHCCCCCEEEEEECCCHHHHHHHHHHH-HHHHCCCCCCCCCC
Q ss_conf 0023455553210011000010000-00012---2345442872025787211010434578888-64100123343110
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKV-NIHDL---LKEIAKRSSRLILILNKIDCVKPERLLEQAE-IANKLVFIEKTFMV 167 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~-~~~~i---l~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~-~~~~~~~~~~i~~I 167 (311)
..+.+....|..+++|.|.+-..+- -..+. ++...+.+.-.|+|-||+|+.+..++-.++. ..++. .+.-....
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyflet 149 (213)
T KOG0095 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLET 149 (213)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 88998864116489998534574310139999999998506427876146656123333058887888775-55665320
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
||+...|++.|...+...|
T Consensus 150 sakea~nve~lf~~~a~rl 168 (213)
T KOG0095 150 SAKEADNVEKLFLDLACRL 168 (213)
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 2000103999999999999
No 308
>KOG0465 consensus
Probab=98.76 E-value=2.1e-08 Score=74.28 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=81.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC-----EEEECCCCCCEEE-------------EEEEEEEECCEEEEEEECCCCHH
Q ss_conf 12189983389986889999986892-----0210588886021-------------27899973994899998798401
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAK-----VSIVTHKVQTTRS-------------IVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~-----vsivS~k~~TTr~-------------~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
|--+|+|+-.--+||.|+.++++-.. +--|--+ +||.+ ..-...+..++.+.++||||.++
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred HHCCCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCC-CEEEEHHHHHHHCCCEEEECEEEEEECCCEEEEECCCCCEE
T ss_conf 51003169998269851102001302201002320267-60464277786538446412156640452067854897215
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 01235753210023455553210011000010000000122345442872025787211010
Q gi|254780941|r 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 83 ~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
+.-.+.+++.-.|..++|+|+..+...+..-...++.+.+.|.+.-+||+|...
T Consensus 117 --------FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmG 170 (721)
T KOG0465 117 --------FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMG 170 (721)
T ss_pred --------EEEEEHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEHHHHCC
T ss_conf --------797720025205672899970365111356898888761897599986166447
No 309
>PRK09866 hypothetical protein; Provisional
Probab=98.75 E-value=6.5e-09 Score=77.55 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=73.7
Q ss_pred CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHH
Q ss_conf 948999987984010123575321002345555321001100001000000012234544--287202578721101043
Q gi|254780941|r 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPE 146 (311)
Q Consensus 69 ~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~ 146 (311)
-++++++||||=.+... ..+......-+..+..|+.|.|-++-....|.++-+.+.. ...|..+.+||.|--+..
T Consensus 229 ~G~L~llDTPGPNEAGq---~~l~~m~~eQL~raSaVLaVmDyTQl~s~ad~evr~~l~ai~~~~~l~~lvnkfdq~drn 305 (742)
T PRK09866 229 PGQLTLLDTPGPNEAGQ---PHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (742)
T ss_pred CCCEEEECCCCCCCCCC---HHHHHHHHHHHHHHCCHHEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77158735999973355---779999999998614211021167544200699999999986100599998654000347
Q ss_pred -----HHHHHH--HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH--HCC
Q ss_conf -----457888--86410012334311000138742678999998--366
Q gi|254780941|r 147 -----RLLEQA--EIANKLVFIEKTFMVSATKGHGCDDVLNYLCS--TLP 187 (311)
Q Consensus 147 -----~l~~~~--~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~--~lp 187 (311)
.+...+ ...+.......|||+|+..|+=-+.-+..|.. .||
T Consensus 306 ~d~~~~vr~~v~~~l~~g~i~~~~v~p~ss~~~ylanrar~eL~~~G~Lp 355 (742)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLP 355 (742)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87199999873355523898753235433789999878999999659999
No 310
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=1.5e-08 Score=75.20 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2345555321001100001000000012234544--28720257872110104345788886410012334311000138
Q gi|254780941|r 95 SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 95 ~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
.|+++++||++++|+||..+....+..+.+.+++ .++|.++|+||+|++++.........+.+..+ ...+..|+.+.
T Consensus 2 l~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~-~~~~~~s~~~~ 80 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYP-TIAFHASINNP 80 (157)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCCC
T ss_conf 88978759999999889888887898999998753799978999989447987899999998648897-39999532386
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 742678999998366
Q gi|254780941|r 173 HGCDDVLNYLCSTLP 187 (311)
Q Consensus 173 ~Gid~L~~~L~~~lp 187 (311)
.|...|.+.+.+..+
T Consensus 81 ~~~~~l~~~l~~~~~ 95 (157)
T cd01858 81 FGKGSLIQLLRQFSK 95 (157)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 468999999998765
No 311
>KOG1707 consensus
Probab=98.74 E-value=4.1e-08 Score=72.34 Aligned_cols=167 Identities=22% Similarity=0.276 Sum_probs=97.0
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 324368512189983389986889999986892-0210588886021278999739948999987984010123575321
Q gi|254780941|r 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMI 92 (311)
Q Consensus 14 ~~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~ 92 (311)
+++..+ -.|+++|-.++|||||+=+|+... +-.|-+.. -+-.|-+-.+-+.....++||+--...+
T Consensus 4 ~~t~kd---VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl--~~i~IPadvtPe~vpt~ivD~ss~~~~~-------- 70 (625)
T KOG1707 4 DETLKD---VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL--PRILIPADVTPENVPTSIVDTSSDSDDR-------- 70 (625)
T ss_pred CCCCCC---EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCEEEEECCCCCCHH--------
T ss_conf 567552---599997788866899999987633545345557--7611587567676721887436664256--------
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCC--HHHHHHHHHH-----CCCCCEEEEEECCCHHHHH------HHHHHHHHHHCC
Q ss_conf 00234555532100110000100000--0012234544-----2872025787211010434------578888641001
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK-----RSSRLILILNKIDCVKPER------LLEQAEIANKLV 159 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~--~~~il~~l~~-----~~~p~IiVlNKiDlv~~~~------l~~~~~~~~~~~ 159 (311)
....+.+..||+++++...+++.+-+ -...+-.++. .+.|+|+|-||+|...... +++.+..+ .
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~ 147 (625)
T KOG1707 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---A 147 (625)
T ss_pred HHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH---H
T ss_conf 8899998645889999853876876544432236564415777668779983035775545564157778999875---7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 233431100013874267899999836-6223568964
Q gi|254780941|r 160 FIEKTFMVSATKGHGCDDVLNYLCSTL-PLAPWVYSAD 196 (311)
Q Consensus 160 ~~~~i~~ISAk~g~Gid~L~~~L~~~l-pe~~~~y~~~ 196 (311)
..+.-|.+||++..++.++..+-.+.. .+-.++|+.+
T Consensus 148 EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~ 185 (625)
T KOG1707 148 EIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAE 185 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
T ss_conf 77788765465441137765454420523576443544
No 312
>KOG1547 consensus
Probab=98.73 E-value=1.2e-07 Score=69.38 Aligned_cols=203 Identities=18% Similarity=0.223 Sum_probs=103.8
Q ss_pred CCCCEE---EEEECCCCCCHHHHHHHHHCCCEEEEC-------CCCCCEEEEEE-EEEEECCE--EEEEEECCCCHHHCC
Q ss_conf 851218---998338998688999998689202105-------88886021278-99973994--899998798401012
Q gi|254780941|r 19 NSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVT-------HKVQTTRSIVR-GIVSEKES--QIVFLDTPGIFNAKD 85 (311)
Q Consensus 19 ~~ksg~---VaivG~pN~GKSTL~N~l~g~~vsivS-------~k~~TTr~~i~-gi~~~~~~--qiifvDTPG~~~~~~ 85 (311)
.-|.|| |.+||.+..|||||+|.|..++++--| +.|+||.-.+. .++..+.. ++.++|||||.+.-+
T Consensus 40 ~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn 119 (336)
T KOG1547 40 TMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN 119 (336)
T ss_pred HHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCC
T ss_conf 98626725799980687771156788888887612589765675564278875344533066589988834898533337
Q ss_pred C------CCCCCCCHHHHHH------------HH--HHHHCCCCHHH-HHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 3------5753210023455------------55--32100110000-10000000122345442872025787211010
Q gi|254780941|r 86 S------YHKLMIRLSWSTI------------KH--ADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 86 ~------l~~~~~~~~~~~l------------~~--aDiil~VvDa~-~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
. +-++.++...+.+ .+ +..++|-+..+ +.+.+-|.++++.+.+ -..++-|+-|.|.+.
T Consensus 120 N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547 120 NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH-HHEEEEEEEECCCCC
T ss_conf 5320677999999999999999986776513887547899999679887567044999998865-520433575066442
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 434578888641001233431100013874267899999836-6223568964334302567899875999999730045
Q gi|254780941|r 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL-PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEI 223 (311)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~l-pe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l~~Ei 223 (311)
-++-.+..+ .|.+.+ .-+--.||.+....-.++-...+- +++-|
T Consensus 199 leEr~~Fkq---------------------------rI~~el~~~~i~vYPq~~fded~ed~~lN~k--------vR~~i 243 (336)
T KOG1547 199 LEERSAFKQ---------------------------RIRKELEKHGIDVYPQDSFDEDLEDKTLNDK--------VRESI 243 (336)
T ss_pred HHHHHHHHH---------------------------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--------HHHHC
T ss_conf 777999999---------------------------9999999659400355433344567787798--------88508
Q ss_pred CCCEEEEEEEEECCCCCC-----EEEEEEEEEECCCCCEEE
Q ss_conf 642047885331066772-----358999998279841548
Q gi|254780941|r 224 PYSSCVVTEKWEEKKDGS-----ILIRQVIYVERPSQKKIM 259 (311)
Q Consensus 224 PY~~~v~v~~~~~~~~~~-----~~I~~~I~v~k~sqk~Ii 259 (311)
|+.+.=.-.++.. ||. -.=...|-|+...|=--+
T Consensus 244 PFAVVGsd~e~~v--nG~~vlGRktrWg~IeVen~nhCeF~ 282 (336)
T KOG1547 244 PFAVVGSDKEIQV--NGRRVLGRKTRWGIIEVENLNHCEFV 282 (336)
T ss_pred CEEEECCCCEEEE--CCEEEECCCCCCCEEEECCCCCCHHH
T ss_conf 7478536623888--68475235564426874255541159
No 313
>KOG0074 consensus
Probab=98.73 E-value=4.6e-08 Score=72.06 Aligned_cols=157 Identities=21% Similarity=0.189 Sum_probs=105.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH-HHH
Q ss_conf 2189983389986889999986892021058888602127899973994899998798401012357532100234-555
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS-TIK 100 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~-~l~ 100 (311)
--.+.+.|.-||||+|++..|.++.+.-+++..+ .++..+-..++..+.+.|..|-. -.+-+|+ ..+
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~hltpT~G---Fn~k~v~~~g~f~LnvwDiGGqr---------~IRpyWsNYye 84 (185)
T KOG0074 17 EIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG---FNTKKVEYDGTFHLNVWDIGGQR---------GIRPYWSNYYE 84 (185)
T ss_pred EEEEEEEECCCCCCHHHHHHHCCCCHHHCCCCCC---CCEEEEEECCCEEEEEEECCCCC---------CCCHHHHHHHH
T ss_conf 4789997227776130888871378333156688---52478762470788888527866---------55445665553
Q ss_pred HHHHHCCCCHHHHHHH-----CCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCC
Q ss_conf 5321001100001000-----00001223454428720257872110104345788886410012---334311000138
Q gi|254780941|r 101 HADIVCLVVDSHRELK-----VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKG 172 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~-----~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~---~~~i~~ISAk~g 172 (311)
++|.++||+|+++.-. ...-++++..+-...|+.+-.||-|++......+.+..++-..- ...|-..||+++
T Consensus 85 nvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074 85 NVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCHHHHHHHCCHHHHHHCEEEEEECCCCCC
T ss_conf 05548999847736768998899999852312200001001225678763426788774560022010477331765455
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 742678999998366223
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLAP 190 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~~ 190 (311)
.|+..=.+++.+...++.
T Consensus 165 eg~~dg~~wv~sn~~~~t 182 (185)
T KOG0074 165 EGSTDGSDWVQSNPETGT 182 (185)
T ss_pred CCCCCCCHHHHCCCCCCC
T ss_conf 676674045544998888
No 314
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=98.72 E-value=1.4e-08 Score=75.38 Aligned_cols=86 Identities=26% Similarity=0.333 Sum_probs=57.3
Q ss_pred HHHHHHHCCCCHHHHHHHCC-HHHHHHHHHHCCCCCEEEEEECCCHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 55532100110000100000-0012234544287202578721101043457---8888641001233431100013874
Q gi|254780941|r 99 IKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILILNKIDCVKPERLL---EQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~~~-~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~---~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
..++|-++.|+-+...+... ...++-.....+.+.++|+||+|+++++... ...+.|... + .+++++||+++.|
T Consensus 120 AANIDqvlIV~A~~P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~l-G-Y~v~~~Sa~~~~g 197 (344)
T PRK12288 120 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLDIYRNI-G-YRVLMVSSHTGEG 197 (344)
T ss_pred EEECCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHC-C-CEEEEEECCCCCC
T ss_conf 9716889999968999897899999999998699779997314408977899999999999867-9-7399973688628
Q ss_pred HHHHHHHHHHHC
Q ss_conf 267899999836
Q gi|254780941|r 175 CDDVLNYLCSTL 186 (311)
Q Consensus 175 id~L~~~L~~~l 186 (311)
+++|.++|....
T Consensus 198 l~~L~~~L~~kt 209 (344)
T PRK12288 198 LEPLEAALTGRI 209 (344)
T ss_pred HHHHHHHHCCCE
T ss_conf 999999876785
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.70 E-value=9e-08 Score=70.15 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=79.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEE----CCCCCCEEE---E--EEEEEEECCE--EEEEEECCCCHHHCCC------
Q ss_conf 899833899868899999868920210----588886021---2--7899973994--8999987984010123------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIV----THKVQTTRS---I--VRGIVSEKES--QIVFLDTPGIFNAKDS------ 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsiv----S~k~~TTr~---~--i~gi~~~~~~--qiifvDTPG~~~~~~~------ 86 (311)
.|-++|..+.||||++|.|+++.+.-. ..++..++. . -...+..++. ++.++|||||.+.-+.
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~ 104 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEP 104 (373)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 89996278875557887656765257777557666667762588864316604874898888615886565464101799
Q ss_pred --------CCCCC------CCHHHHHHHHHHHHCCCCHH-HHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf --------57532------10023455553210011000-0100000001223454428720257872110104345788
Q gi|254780941|r 87 --------YHKLM------IRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ 151 (311)
Q Consensus 87 --------l~~~~------~~~~~~~l~~aDiil~VvDa-~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~ 151 (311)
+...+ .+.+.-.=..++++||.+.. .+++.+.|.++++.+.+ ...+|-|+-|+|.+..+++...
T Consensus 105 I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~El~~~ 183 (373)
T COG5019 105 IVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDELAEF 183 (373)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHH
T ss_conf 999999999999998643455665446824899998468988787888999999853-3675656624665899999999
Q ss_pred HHHHH
Q ss_conf 88641
Q gi|254780941|r 152 AEIAN 156 (311)
Q Consensus 152 ~~~~~ 156 (311)
.+...
T Consensus 184 K~~I~ 188 (373)
T COG5019 184 KERIR 188 (373)
T ss_pred HHHHH
T ss_conf 99999
No 316
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=98.70 E-value=1.9e-08 Score=74.46 Aligned_cols=92 Identities=24% Similarity=0.214 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
+..++.++.+|+|+.|+||+.+.......+.+.+ .++|.++|+||+|+++++......+.+.+. + ..++++||+++
T Consensus 16 r~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~-~-~~~~~~sa~~~ 91 (282)
T PRK09563 16 REIKENLKKVDVVIEVLDARIPLSSENPMIDKII--GNKPRLLVLNKSDLADPEVTKKWIEYFEEQ-G-VKALAINAKEG 91 (282)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHHHC-C-CCEEEEECCCC
T ss_conf 9999998769999999765477675887599997--689769997555488999999999999704-9-95699746674
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
.|+..+.+.+.+.+++
T Consensus 92 ~~~~~l~~~~~~~~~~ 107 (282)
T PRK09563 92 QGVKKILKAAKKLGKE 107 (282)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 3388999999999999
No 317
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.69 E-value=1.6e-07 Score=68.61 Aligned_cols=120 Identities=15% Similarity=0.273 Sum_probs=73.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99833899868899999868920210588886021278-99973994899998798401012357532100234555532
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aD 103 (311)
|.++|++.+||||+-.-+.....+-=+..-+.|-+.-. .+...++.++-+.|.||-.. .....+.......+..+.
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~---f~e~~~~~~~e~if~~v~ 78 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD---FMENYLTRQKEHIFSNVG 78 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHH---HHHHHCCCCHHHHHHCCC
T ss_conf 78756899987776999867998214120257777677877416873689997698353---544120022354764478
Q ss_pred HHCCCCHHH-HHHHCCHH---HHHHHHHHC--CCCCEEEEEECCCHHHHH
Q ss_conf 100110000-10000000---122345442--872025787211010434
Q gi|254780941|r 104 IVCLVVDSH-RELKVNIH---DLLKEIAKR--SSRLILILNKIDCVKPER 147 (311)
Q Consensus 104 iil~VvDa~-~~~~~~~~---~il~~l~~~--~~p~IiVlNKiDlv~~~~ 147 (311)
+++||+|+. +...+... ..+..+.+. +..+.+.+.|+|++.++.
T Consensus 79 ~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~ 128 (230)
T pfam04670 79 VLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDE 128 (230)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH
T ss_conf 89999968886099999999999999998399988999996035888667
No 318
>KOG2423 consensus
Probab=98.65 E-value=6.7e-09 Score=77.45 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=46.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC
Q ss_conf 218998338998688999998689202105888860212789997399489999879840101
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~ 84 (311)
---|++||.|||||||++|+|-..+||-|.|.|+-|.-...-.+ ...|-++|.||++-+.
T Consensus 307 qISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423 307 QISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH---HHCEEEECCCCCCCCC
T ss_conf 22566624888755888888753453112588884038899988---7213674479724888
No 319
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=98.63 E-value=6.5e-08 Score=71.07 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=66.3
Q ss_pred CCCCC-CEEEEEECCCCCCHHHHHHHHHCCCEEEEC-CCCCCEE-EEEEEEEEECCEEEEEEECCCCHHH--CCCCCCCC
Q ss_conf 36851-218998338998688999998689202105-8888602-1278999739948999987984010--12357532
Q gi|254780941|r 17 QDNSR-SGCVALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNA--KDSYHKLM 91 (311)
Q Consensus 17 ~~~~k-sg~VaivG~pN~GKSTL~N~l~g~~vsivS-~k~~TTr-~~i~gi~~~~~~qiifvDTPG~~~~--~~~l~~~~ 91 (311)
++..- |..|-++|+.+||||.-+|+|+|+..+-++ -.+.||+ ..|.|. .++.++.|+||||+..+ ....|+.+
T Consensus 118 ~d~l~FSl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~V~~i~G~--V~Gv~i~viDTPGL~~s~~dQs~N~K~ 195 (772)
T TIGR00993 118 QDELDFSLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTSVQEIEGL--VDGVKIRVIDTPGLKSSASDQSKNEKI 195 (772)
T ss_pred CCCHHHEEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEEEEEE--EEEEEEEEEECCCCCHHHHHHHHCHHH
T ss_conf 862130114345515687720101111235001201014666447766667--710799997578875555433302068
Q ss_pred CCHHHHHHHH--HHHHCCCC
Q ss_conf 1002345555--32100110
Q gi|254780941|r 92 IRLSWSTIKH--ADIVCLVV 109 (311)
Q Consensus 92 ~~~~~~~l~~--aDiil~Vv 109 (311)
...+...++. -|+||||=
T Consensus 196 L~sVK~~~KK~PPDIVLY~D 215 (772)
T TIGR00993 196 LSSVKKLIKKNPPDIVLYVD 215 (772)
T ss_pred HHHHHHHHCCCCCCEEEEEC
T ss_conf 88888863179696698600
No 320
>KOG0463 consensus
Probab=98.62 E-value=1.5e-07 Score=68.79 Aligned_cols=165 Identities=21% Similarity=0.294 Sum_probs=98.5
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCE----------------EEECCCCCCEEEEEEE------EEE--------
Q ss_conf 3685121899833899868899999868920----------------2105888860212789------997--------
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKV----------------SIVTHKVQTTRSIVRG------IVS-------- 66 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~v----------------sivS~k~~TTr~~i~g------i~~-------- 66 (311)
..++---.||+||...||||||+--|+...+ -+-|.+.-..-+-|+| +++
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 75501379899712247722167665304434672277887765223103675445566202002546421588988886
Q ss_pred -------ECCE-EEEEEECCCCHHHCCCCCCCCCCHHHHHH-HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf -------3994-89999879840101235753210023455-55321001100001000000012234544287202578
Q gi|254780941|r 67 -------EKES-QIVFLDTPGIFNAKDSYHKLMIRLSWSTI-KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 (311)
Q Consensus 67 -------~~~~-qiifvDTPG~~~~~~~l~~~~~~~~~~~l-~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVl 137 (311)
.+.. -+.|+|.+|.- +++...++... .-.|...+++-++-++-....+.+........|+++|+
T Consensus 208 LdWvkIce~saKviTFIDLAGHE-------kYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVV 280 (641)
T KOG0463 208 LDWVKICEDSAKVITFIDLAGHE-------KYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVV 280 (641)
T ss_pred CCCEEECCCCCEEEEEEECCCHH-------HHHHEEEECCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHCCCEEEEE
T ss_conf 43134313642268988615415-------52311441033678872589851666511144776545564268579999
Q ss_pred EECCCHHHHHHHHHHHHHHHCC----------------------------CCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 7211010434578888641001----------------------------233431100013874267899999836622
Q gi|254780941|r 138 NKIDCVKPERLLEQAEIANKLV----------------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 138 NKiDlv~~~~l~~~~~~~~~~~----------------------------~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~ 189 (311)
+|+|+....-+.+.++.+.+++ ....||.||-.+|.|++-|+.+|- .++.+
T Consensus 281 TKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN-lls~R 359 (641)
T KOG0463 281 TKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN-LLSLR 359 (641)
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHH-HCCCC
T ss_conf 85055817899999999999862877650757885156447861358621235407861566778389999986-43744
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=98.61 E-value=4.5e-08 Score=72.07 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=43.9
Q ss_pred EEEEEECCCHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 257872110104--34578888641001233431100013874267899999836
Q gi|254780941|r 134 ILILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 134 IiVlNKiDlv~~--~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
++|+||+|++.. -++.+..+..++.-|..+||.+||+||+|+++..+||.+..
T Consensus 168 ~~~inK~DL~~~v~~D~ek~~~d~~~~nP~a~Ii~~S~ktg~Gl~~w~~~l~~~~ 222 (225)
T TIGR00073 168 LILINKVDLAEAVGFDVEKMKADARKINPEAEIILVSAKTGKGLDEWLEFLEGKK 222 (225)
T ss_pred HHHHCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5621478899770736789999998628950799863689734789999999864
No 322
>KOG2655 consensus
Probab=98.61 E-value=1.5e-07 Score=68.73 Aligned_cols=132 Identities=22% Similarity=0.337 Sum_probs=80.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE------ECCCCCCEEE--EEEEEEEECCE--EEEEEECCCCHHHCCC-------
Q ss_conf 89983389986889999986892021------0588886021--27899973994--8999987984010123-------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSI------VTHKVQTTRS--IVRGIVSEKES--QIVFLDTPGIFNAKDS------- 86 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsi------vS~k~~TTr~--~i~gi~~~~~~--qiifvDTPG~~~~~~~------- 86 (311)
.+-++|..+.|||||+|.|++..++- .+..+..|.. .-...+..++. ++.++|||||.+.-+.
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi 102 (366)
T KOG2655 23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPI 102 (366)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 89985588763889998888653257766677556765531132232376379748876784369986544651243235
Q ss_pred -------CCCCCCC---HHHHHHH--HHHHHCCCCHH-HHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf -------5753210---0234555--53210011000-010000000122345442872025787211010434578888
Q gi|254780941|r 87 -------YHKLMIR---LSWSTIK--HADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAE 153 (311)
Q Consensus 87 -------l~~~~~~---~~~~~l~--~aDiil~VvDa-~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~ 153 (311)
...++.. .....+. .++++||-+.. .+++.+.|..+++.+.. ..++|-|+-|.|.+.++.+.....
T Consensus 103 ~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~K~ 181 (366)
T KOG2655 103 VNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQFKK 181 (366)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCCEEECCCCCCHHHHHHHHH
T ss_conf 6789999999986023688655668844899998378888886866999997732-566103164056689899999999
Q ss_pred HHH
Q ss_conf 641
Q gi|254780941|r 154 IAN 156 (311)
Q Consensus 154 ~~~ 156 (311)
...
T Consensus 182 ~I~ 184 (366)
T KOG2655 182 RIR 184 (366)
T ss_pred HHH
T ss_conf 999
No 323
>KOG0077 consensus
Probab=98.60 E-value=7.6e-08 Score=70.64 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=92.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 51218998338998688999998689202105888860212789997399489999879840101235753210023455
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
.|+|-+.+.|.-||||+||++.|-..++.- +.| |.++..--+..++..+.-+|.-|.-..+. .-...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q--hvP--TlHPTSE~l~Ig~m~ftt~DLGGH~qArr--------~wkdyf 85 (193)
T KOG0077 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ--HVP--TLHPTSEELSIGGMTFTTFDLGGHLQARR--------VWKDYF 85 (193)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCC--CCC--CCCCCHHHHEECCCEEEEECCCCHHHHHH--------HHHHHH
T ss_conf 367518999515775266898873300113--578--76897677313571589972566799998--------888787
Q ss_pred HHHHHHCCCCHHHHHHHCC-----HHHHHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHC------------C
Q ss_conf 5532100110000100000-----001223454428720257872110104---3457888864100------------1
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVN-----IHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKL------------V 159 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~-----~~~il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~------------~ 159 (311)
..+|.++|++|+.+...-. ...++..-.-...|+++..||+|.... +++.......+.. .
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~el~~ll~~e~la~vp~lilgnKId~~~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred HHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 65431685301121777677899999887688771586101116556887333799989999888742465212468887
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23343110001387426789999
Q gi|254780941|r 160 FIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 160 ~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
..-++|++|...+.|--+-..++
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl 188 (193)
T KOG0077 166 RPLEVFMCSIVRKMGYGEGFKWL 188 (193)
T ss_pred CEEEEEEEEEECCCCCCEEEEEH
T ss_conf 75689989986367663100100
No 324
>KOG0447 consensus
Probab=98.59 E-value=3.5e-07 Score=66.33 Aligned_cols=141 Identities=18% Similarity=0.292 Sum_probs=82.3
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECC---------------CC---------------
Q ss_conf 765410143324368512189983389986889999986892021058---------------88---------------
Q gi|254780941|r 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTH---------------KV--------------- 54 (311)
Q Consensus 5 e~~~~~~~~~~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~---------------k~--------------- 54 (311)
-++.+++.+......-.-..|++||-..+||+|.+-.+...++.+-.+ -|
T Consensus 291 VLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDL 370 (980)
T KOG0447 291 VLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDL 370 (980)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCCCHHHHHCCCCCCCCC
T ss_conf 99987254546651146862799756666622899999874307688853100377478814686034542465422465
Q ss_pred -----------------------CCEEEEEEEEEEE--CCEE-EEEEECCCCHHHCCC-C----CCCCCCHHHHHHHHHH
Q ss_conf -----------------------8602127899973--9948-999987984010123-5----7532100234555532
Q gi|254780941|r 55 -----------------------QTTRSIVRGIVSE--KESQ-IVFLDTPGIFNAKDS-Y----HKLMIRLSWSTIKHAD 103 (311)
Q Consensus 55 -----------------------~TTr~~i~gi~~~--~~~q-iifvDTPG~~~~~~~-l----~~~~~~~~~~~l~~aD 103 (311)
|.|..+-.-.+|. ++-| ++++|.||+++.-.. + -+...+.....+++.+
T Consensus 371 TKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPN 450 (980)
T KOG0447 371 TKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPN 450 (980)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 41557999988888998850357851451216897218996236886377325440023464316779999999745998
Q ss_pred HHCCCC-HHHHHH-HCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 100110-000100-000001223454428720257872110104
Q gi|254780941|r 104 IVCLVV-DSHREL-KVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 104 iil~Vv-Da~~~~-~~~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
.|++++ |++-.. ......++..+-..+...|+|++|+|++.+
T Consensus 451 AIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447 451 AIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHH
T ss_conf 38999516873055513888987138778736999851115644
No 325
>KOG0093 consensus
Probab=98.58 E-value=3.7e-07 Score=66.22 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCCCCC--CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCE--EEEEEEEEEEC-CEEEEEEECCCCHHHCCCCC
Q ss_conf 3243685--1218998338998688999998689202105888860--21278999739-94899998798401012357
Q gi|254780941|r 14 DFVQDNS--RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 14 ~~~~~~~--ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TT--r~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~ 88 (311)
+..+.|+ ++ .+.|+|...|||+|++-+-++.... +...-|- -.....++..+ ...+-+.||.|.-
T Consensus 12 ~s~dqnFDymf-KlliiGnssvGKTSfl~ry~ddSFt--~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE------- 81 (193)
T KOG0093 12 DSIDQNFDYMF-KLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE------- 81 (193)
T ss_pred CCCCCCCCCEE-EEEEECCCCCCCHHHHHHHHCCCCC--CCEEEEEEEEEEEEEEEECCCEEEEEEEECCCCH-------
T ss_conf 56642310102-6899726876621355776065544--0004663113788676514647788987166510-------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCC-HHH---HHHHHHHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCC
Q ss_conf 532100234555532100110000100000-001---223454428720257872110104345-788886410012334
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHD---LLKEIAKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEK 163 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~-~~~---il~~l~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~ 163 (311)
+....+-..+.+++.++++.|.+....-. .+. .++.....+.|+|+|-||+|+-+...+ .+....+...+++ +
T Consensus 82 -ryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-e 159 (193)
T KOG0093 82 -RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-E 159 (193)
T ss_pred -HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHCH-H
T ss_conf -35677788761464599998547878889899898875034316861899804557743200127888899998484-7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 31100013874267899999836
Q gi|254780941|r 164 TFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 164 i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
.|..||+.+.|++++.+.+....
T Consensus 160 fFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093 160 FFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 75513302666999999999999
No 326
>KOG4252 consensus
Probab=98.57 E-value=8.5e-08 Score=70.31 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=95.3
Q ss_pred HHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCCHHHHHHHHHCC------CEEEECCCCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 777654101433243685-1218998338998688999998689------202105888860212789997399489999
Q gi|254780941|r 3 MGEITFFNEHKDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGA------KVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 (311)
Q Consensus 3 ~~e~~~~~~~~~~~~~~~-ksg~VaivG~pN~GKSTL~N~l~g~------~vsivS~k~~TTr~~i~gi~~~~~~qiifv 75 (311)
|.|+.+|.... |.+++. +.--+.|+|.-.|||||++.+.+.- +-+|-.+ .+-|. +. +..++..+.+.
T Consensus 1 ~~~~~~~~~~a-m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvd--flerq-i~--v~~Edvr~mlW 74 (246)
T KOG4252 1 MDELMFFRGMA-MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVD--FLERQ-IK--VLIEDVRSMLW 74 (246)
T ss_pred CCHHHHHCCCC-CCCHHHHHHEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHH--HHHHH-HH--HHHHHHHHHHH
T ss_conf 91466652678-880324553789998788624689999985244556654000323--52677-77--40899999998
Q ss_pred ECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-CCHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHH-HH
Q ss_conf 87984010123575321002345555321001100001000-00001223454--4287202578721101043457-88
Q gi|254780941|r 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIA--KRSSRLILILNKIDCVKPERLL-EQ 151 (311)
Q Consensus 76 DTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~-~~~~~il~~l~--~~~~p~IiVlNKiDlv~~~~l~-~~ 151 (311)
||.|-- .+.-.+.....+|...++|+..++... +...++.+.+. -..+|.++|-||+|++++..+. ..
T Consensus 75 dtagqe--------EfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~e 146 (246)
T KOG4252 75 DTAGQE--------EFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGE 146 (246)
T ss_pred HHCCCH--------HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHH
T ss_conf 722316--------677899987425640489985451777899999999999875568758764220056765213588
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 886410012334311000138742678999998366
Q gi|254780941|r 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 152 ~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
.+.+.+.+. ...+-+|++...|+.+...+|++.+-
T Consensus 147 vE~lak~l~-~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252 147 VEGLAKKLH-KRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999864-34321666654006779999999999
No 327
>KOG0460 consensus
Probab=98.55 E-value=2.1e-07 Score=67.73 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE---EE------------CCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 8998338998688999998689202---10------------58888602127899973994899998798401012357
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVS---IV------------THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vs---iv------------S~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
+|+-+|.-..||+||.-||+.---. +. -..-+-|-+...--+......+--+|.||..
T Consensus 56 NVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA------- 128 (449)
T KOG0460 56 NVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA------- 128 (449)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHH-------
T ss_conf 2033003357720089999999975165010547665338266535616764356642244300147899638-------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHHHH-----HHHHCCCC-
Q ss_conf 532100234555532100110000100000001223454428720257-87211010434578888-----64100123-
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKIDCVKPERLLEQAE-----IANKLVFI- 161 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiV-lNKiDlv~~~~l~~~~~-----~~~~~~~~- 161 (311)
..++.........|..++||-|+++..++..+.+-..++.+.+-++| +||.|++++.++++..+ .++++...
T Consensus 129 -DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460 129 -DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred -HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -8998753273236734999974789884068888889872876499997120246888999999999999999729998
Q ss_pred --CCCCCC---CCCCCCC-------HHHHHHHHHHHCCC
Q ss_conf --343110---0013874-------26789999983662
Q gi|254780941|r 162 --EKTFMV---SATKGHG-------CDDVLNYLCSTLPL 188 (311)
Q Consensus 162 --~~i~~I---SAk~g~G-------id~L~~~L~~~lpe 188 (311)
..++.= ||+.|.+ |..|++.+-+++|.
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred CCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 878766320122222788420579999999987515898
No 328
>KOG0079 consensus
Probab=98.50 E-value=4.9e-07 Score=65.37 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=92.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCC-CEEEEEEEEEE----ECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 9983389986889999986892021058888-60212789997----399489999879840101235753210023455
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TTRSIVRGIVS----EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~-TTr~~i~gi~~----~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
-.|+|-|.||||+|+-++.....| +.- ||--.-.-|.| .+...+-+.||+|- +++........
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs----~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrtitstyy 78 (198)
T KOG0079 11 LLIIGDSGVGKSSLLLRFADDTFS----GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTITSTYY 78 (198)
T ss_pred HHEECCCCCCHHHHHHHHHHCCCC----CCEEEEEEEEEEEEEEECCCCEEEEEEEECCCH--------HHHHHHHHHHC
T ss_conf 883268764578999998525556----514887533579998604886899998614057--------99999988770
Q ss_pred HHHHHHCCCCHHHHHHH-CCHHHHHHHHHHC--CCCCEEEEEECCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 55321001100001000-0000122345442--87202578721101043457-88886410012334311000138742
Q gi|254780941|r 100 KHADIVCLVVDSHRELK-VNIHDLLKEIAKR--SSRLILILNKIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~-~~~~~il~~l~~~--~~p~IiVlNKiDlv~~~~l~-~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++...+++|.|.+.+.. ......+++++.. ..|-++|-||.|......+. +.+..+....+ -+.|..||+...|+
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe~~Nv 157 (198)
T KOG0079 79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKENENV 157 (198)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEHHHHHHHHHHCC-CHHEEHHHHHCCCC
T ss_conf 38866999997766365675999999998549643522104678875433430388999998669-20100002330241
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
+.....|.+..
T Consensus 158 E~mF~cit~qv 168 (198)
T KOG0079 158 EAMFHCITKQV 168 (198)
T ss_pred HHHHHHHHHHH
T ss_conf 67899999999
No 329
>KOG0088 consensus
Probab=98.50 E-value=1.7e-07 Score=68.34 Aligned_cols=155 Identities=20% Similarity=0.218 Sum_probs=96.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEE--EEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 89983389986889999986892021058888602127--899973--99489999879840101235753210023455
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--RGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i--~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
.|+++|.--||||||+=+.+-.+... |--+|-... .--++. ...++.+.||+|--+ -+.++-.. .
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQEr-fHALGPIY-------Y 83 (218)
T KOG0088 15 KIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQER-FHALGPIY-------Y 83 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCH---HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHH-HHCCCCEE-------E
T ss_conf 89997487556068999998723230---4678999887633046211131143212444576-52357537-------7
Q ss_pred HHHHHHCCCCHHHHHHH-CCHHHHHHHHHH---CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 55321001100001000-000012234544---28720257872110104345-78888641001233431100013874
Q gi|254780941|r 100 KHADIVCLVVDSHRELK-VNIHDLLKEIAK---RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~-~~~~~il~~l~~---~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
.++|.+++|.|.++.-. ......+.+++. ....+++|-||+|+-+...+ ...++.+.+..+ ...+..||+.+.|
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~N~G 162 (218)
T KOG0088 84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKDNVG 162 (218)
T ss_pred ECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC-HHHEECCCCCCCC
T ss_conf 079962899864446889999999999998718835999953744678864202988999998633-3431111102437
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 2678999998366223
Q gi|254780941|r 175 CDDVLNYLCSTLPLAP 190 (311)
Q Consensus 175 id~L~~~L~~~lpe~~ 190 (311)
|.+|.+.|...+-|..
T Consensus 163 i~elFe~Lt~~MiE~~ 178 (218)
T KOG0088 163 ISELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999874
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=1.2e-07 Score=69.28 Aligned_cols=55 Identities=36% Similarity=0.436 Sum_probs=43.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC--------EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 189983389986889999986892--------0210588886021278999739948999987984
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK--------VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~--------vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
+.|.+||.||||||||+|+|+++. ..-||+.||||++.+.-- .++ ...++||||+
T Consensus 128 ~~vyvvG~~NvGKSTLiN~Ll~~~~~~~~~~~~~t~S~~PGTTl~~i~~~--l~~-~~~l~DtPGi 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--LGN-GKKLYDTPGI 190 (190)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEE--CCC-CCEEEECCCC
T ss_conf 85799805875467999998630234434566406679997316525897--399-9999959599
No 331
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.49 E-value=2.1e-07 Score=67.72 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=72.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEE---------------------------------------
Q ss_conf 89983389986889999986892021058888602127899---------------------------------------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI--------------------------------------- 64 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi--------------------------------------- 64 (311)
-++++|--.+||||++.+|+|-..-+++.- -.||.++.-.
T Consensus 28 qiVVvGdQSsGKSSvLEaitGi~FlPr~~g-~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 106 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCC-CEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 489988878758999999878875556897-2764406999733886512477437863489899999999988753267
Q ss_pred ------------EEEC-CEEEEEEECCCCHHHCCC-CC----CCCCCHHHHHHHHHH-HHCCCCHHHHHHH-CCHHHHHH
Q ss_conf ------------9739-948999987984010123-57----532100234555532-1001100001000-00001223
Q gi|254780941|r 65 ------------VSEK-ESQIVFLDTPGIFNAKDS-YH----KLMIRLSWSTIKHAD-IVCLVVDSHRELK-VNIHDLLK 124 (311)
Q Consensus 65 ------------~~~~-~~qiifvDTPG~~~~~~~-l~----~~~~~~~~~~l~~aD-iil~VvDa~~~~~-~~~~~il~ 124 (311)
+..+ -..+.|+|.||+...... -. ......+.+.+.+-. +||.|++|+..+. .....+.+
T Consensus 107 ~~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~anq~~l~lAr 186 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK 186 (240)
T ss_pred CCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 88767885599994799988544147541246789985679999999999984798806999840785676619999999
Q ss_pred HHHHCCCCCEEEEEECCCHHHH
Q ss_conf 4544287202578721101043
Q gi|254780941|r 125 EIAKRSSRLILILNKIDCVKPE 146 (311)
Q Consensus 125 ~l~~~~~p~IiVlNKiDlv~~~ 146 (311)
++-..+...+.|++|.|++++.
T Consensus 187 ~~Dp~g~RTiGVlTKpDl~~~g 208 (240)
T smart00053 187 EVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHCCCCCEEEEEECCCCCCCCC
T ss_conf 7199998289997353345777
No 332
>KOG3883 consensus
Probab=98.48 E-value=1.6e-06 Score=62.11 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=99.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC---EEEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 1218998338998688999998689202105888860212789997399---4899998798401012357532100234
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE---SQIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~---~qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
|++.|.+.|.-.|||+.++..|+=-+..+-+..--|--+.-.+.+..+. .|+.|.||.|+-.....+.+ .
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLpr-------h 80 (198)
T KOG3883 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPR-------H 80 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEEECCCCHHHEEEEEECCCCCCCHHHHHH-------H
T ss_conf 640799977745228999999985167889766663442246764068781016888652445576002027-------6
Q ss_pred HHHHHHHHCCCCHHHHHHHCCHHHHHH-HHH----HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 555532100110000100000001223-454----428720257872110104345-78888641001233431100013
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVNIHDLLK-EIA----KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~~~~il~-~l~----~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
.+.-+|..++|.+..+..+-+-.++++ ++. +...|+++..||.|+..+.+. ...+..+.+.-. -..+.|+|..
T Consensus 81 y~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-vkl~eVta~d 159 (198)
T KOG3883 81 YFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-VKLWEVTAMD 159 (198)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCCHHCCHHHHHHHHHHHH-EEEEEEEECC
T ss_conf 710576579996379988988999999998625565512289973001013640127889988876530-2478987134
Q ss_pred CCCHHHHHHHHHHHC--CCCCCCCC
Q ss_conf 874267899999836--62235689
Q gi|254780941|r 172 GHGCDDVLNYLCSTL--PLAPWVYS 194 (311)
Q Consensus 172 g~Gid~L~~~L~~~l--pe~~~~y~ 194 (311)
...+-+-..++...+ |...--||
T Consensus 160 R~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883 160 RPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 4224538999987505875445576
No 333
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=98.47 E-value=2.9e-07 Score=66.83 Aligned_cols=246 Identities=20% Similarity=0.231 Sum_probs=142.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CE-----------------------EEECCCCCCEEEEEEEEEEECCEEEEEE
Q ss_conf 8998338998688999998689-----20-----------------------2105888860212789997399489999
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KV-----------------------SIVTHKVQTTRSIVRGIVSEKESQIVFL 75 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~v-----------------------sivS~k~~TTr~~i~gi~~~~~~qiifv 75 (311)
+++|.-.-.|||+|+--+++=. ++ .|+|. -||-.+ .+....-++++-++
T Consensus 12 NiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSA--AT~~~W-k~~~~~~~~~~N~I 88 (705)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSA--ATTVEW-KGMAKQYDHRINII 88 (705)
T ss_pred CCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECH--HCCHHH-HHHHHCCCCEEEEE
T ss_conf 543278633887320101000137501000001678851123123003587142100--110102-10100014037887
Q ss_pred ECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH------HHH
Q ss_conf 87984010123575321002345555321001100001000000012234544287202578721101043------457
Q gi|254780941|r 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE------RLL 149 (311)
Q Consensus 76 DTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~------~l~ 149 (311)
||||.++ +.=.+.+++.-.|..+.|.|+..+..++..-+..++.+...|-|+-+||+|+.-.+ ++.
T Consensus 89 DTPGHVD--------FT~EVERSlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~FVNK~Dk~GAnf~~~~~~~~ 160 (705)
T TIGR00484 89 DTPGHVD--------FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIVFVNKMDKTGANFLRVVNQLK 160 (705)
T ss_pred ECCCCEE--------EEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 3789412--------57885201225645665333026866411567765432688628997155645787889999999
Q ss_pred -----------------------------------------------------HHHHH----------------HHH---
Q ss_conf -----------------------------------------------------88886----------------410---
Q gi|254780941|r 150 -----------------------------------------------------EQAEI----------------ANK--- 157 (311)
Q Consensus 150 -----------------------------------------------------~~~~~----------------~~~--- 157 (311)
+.++. +.+
T Consensus 161 ~rL~~~~~~~qlpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~ 240 (705)
T TIGR00484 161 SRLGANAVPIQLPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLE 240 (705)
T ss_pred HHHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 87467734664112566563104554301567750677664001222647899999999999999884200788998508
Q ss_pred ----------------CC--CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----------------01--233431100013874267899999836622356896433430256789987599999973
Q gi|254780941|r 158 ----------------LV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHL 219 (311)
Q Consensus 158 ----------------~~--~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~~l 219 (311)
.+ .+..++.=||-++.|+.-|+|.+.++||- |.--+.-.-.+.+.. -+.+....
T Consensus 241 G~e~~~~~ik~~~r~g~l~~~~~pv~~GSafKNKGv~~lLDAV~~yLP~-P~dv~~~~~~~~~~~-------~~e~~~~~ 312 (705)
T TIGR00484 241 GEELTIEEIKNAIRKGVLNLELIPVLCGSAFKNKGVQLLLDAVVDYLPS-PTDVPAIKGIDPDTN-------EEEIELKA 312 (705)
T ss_pred CCCCCHHHHHHHHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHCCCCCCC-------CCCEEEEE
T ss_conf 9653689998887513112468888750330002588899999974789-743154302355667-------76136751
Q ss_pred HCCCCCC---EEEEEEEEECCCCCCEEEEEEE------EEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0045642---0478853310667723589999------982798415487466588999999999999998489813789
Q gi|254780941|r 220 HKEIPYS---SCVVTEKWEEKKDGSILIRQVI------YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 (311)
Q Consensus 220 ~~EiPY~---~~v~v~~~~~~~~~~~~I~~~I------~v~k~sqk~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l 290 (311)
.+|-|.+ ..|..+.|-- +=-.++|+.=+ ..+...+|+-=+ .+|=+...+.|.+|+...-..|.--+
T Consensus 313 sd~~~f~~LAFK~~tdpfvG-~LTf~RvY~G~l~~G~~v~Ns~~~k~erv----gRl~~MHa~~re~I~~~~aGdI~A~~ 387 (705)
T TIGR00484 313 SDEEPFVALAFKVATDPFVG-QLTFVRVYSGVLKSGSYVKNSRKSKKERV----GRLVKMHANKREEIKEVRAGDIAAAI 387 (705)
T ss_pred CCCCCCEEEEEEECCCCCCC-EEEEEEEEEEEECCCCEEEECHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 56765122345640587311-27899997615127977760200001443----23331003772100121356368873
Q ss_pred EEE
Q ss_conf 988
Q gi|254780941|r 291 FVK 293 (311)
Q Consensus 291 ~Vk 293 (311)
-+|
T Consensus 388 Glk 390 (705)
T TIGR00484 388 GLK 390 (705)
T ss_pred CCE
T ss_conf 130
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=1.7e-07 Score=68.30 Aligned_cols=79 Identities=29% Similarity=0.340 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 002345555321001100001000000012234544--287202578721101043457888864100123343110001
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
++.++.++.||++++|+||..+.+..+.++...+++ .++|+++|+||+|+++++......+.+.+.. ..++..||.
T Consensus 3 rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~~~~~~~w~~~~~~~~--~~~~~~s~~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECC
T ss_conf 899999976999999998988887689999999998438995799986500499999999999998449--948998426
Q ss_pred CCC
Q ss_conf 387
Q gi|254780941|r 171 KGH 173 (311)
Q Consensus 171 ~g~ 173 (311)
.+.
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
T ss_conf 776
No 335
>TIGR00991 3a0901s02IAP34 GTP-binding protein; InterPro: IPR005688 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts.. The cytosolic region of Toc34 reveals 34% alpha-helical and 260eta-strand structure and is stabilized by intramolecular electrostatic interaction. Toc34 binds both chloroplast preproteins and isolated transit peptides in a guanosine triphosphate- (GTP-) dependent mechanism . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=98.45 E-value=3e-07 Score=66.74 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=82.6
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCH
Q ss_conf 24368512189983389986889999986892021058888602127899973994899998798401012357532100
Q gi|254780941|r 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRL 94 (311)
Q Consensus 15 ~~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~ 94 (311)
.-+|+-.+..|.++|+-+|||||-+|.++|++++.||..----..+.....+.-++.+-++||||+++..+ +++.-...
T Consensus 32 ~k~edv~~lt~lvmGkGGvGksstvn~~~Ge~~~~~s~fqseG~rP~~~sr~r~GftlniidtPGlieGGy-~n~~a~~i 110 (328)
T TIGR00991 32 LKEEDVSSLTILVMGKGGVGKSSTVNSIIGERVAAVSAFQSEGLRPVLVSRTRAGFTLNIIDTPGLIEGGY-INDQAVNI 110 (328)
T ss_pred HHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCC-HHHHHHHH
T ss_conf 21210033678886068766310122333202320000002588632665124661577532786101530-33789999
Q ss_pred HHHHH--HHHHHHCCCC--HHHHHHHCCHHHHHHHHHHC-----CCCCEEEEEECCCHHHH
Q ss_conf 23455--5532100110--00010000000122345442-----87202578721101043
Q gi|254780941|r 95 SWSTI--KHADIVCLVV--DSHRELKVNIHDLLKEIAKR-----SSRLILILNKIDCVKPE 146 (311)
Q Consensus 95 ~~~~l--~~aDiil~Vv--Da~~~~~~~~~~il~~l~~~-----~~p~IiVlNKiDlv~~~ 146 (311)
..+.+ ...|+++||= |+-+ .+.-|..++..+... -...+++++....-.++
T Consensus 111 ik~fll~~tidvllyvdrld~yr-~d~ld~~v~~ait~~fGk~iW~~~~~~lthaq~sPPd 170 (328)
T TIGR00991 111 IKRFLLDKTIDVLLYVDRLDAYR-VDDLDKQVVKAITDSFGKEIWKKSLVVLTHAQLSPPD 170 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99988531212210012332354-5468899999998764277887788876531058888
No 336
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.45 E-value=9.9e-07 Score=63.41 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=87.2
Q ss_pred EEECCCCCCHHHHHHHHHCC----CEEEECC---------------CCCCEEEEEEE-EE-E---------------ECC
Q ss_conf 98338998688999998689----2021058---------------88860212789-99-7---------------399
Q gi|254780941|r 26 ALVGATNAGKSTLVNRFVGA----KVSIVTH---------------KVQTTRSIVRG-IV-S---------------EKE 69 (311)
Q Consensus 26 aivG~pN~GKSTL~N~l~g~----~vsivS~---------------k~~TTr~~i~g-i~-~---------------~~~ 69 (311)
.|-|.=+|||+||+|.|+.+ ++|+.=+ ..--+..-..| ++ | .+.
T Consensus 5 vitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~~ 84 (323)
T COG0523 5 VITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRDR 84 (323)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHCCCC
T ss_conf 98116779989999999854589807999855740221677641348975798369707870342158999999852568
Q ss_pred EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCH---HHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 48999987984010123575321002345555321001100001000000---012234544287202578721101043
Q gi|254780941|r 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI---HDLLKEIAKRSSRLILILNKIDCVKPE 146 (311)
Q Consensus 70 ~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~---~~il~~l~~~~~p~IiVlNKiDlv~~~ 146 (311)
...++|-|-|+..|.......+....+...-..|.++-|||+.+...... ....+++.-.+ ++|+||+|+++.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlNK~Dlv~~~ 161 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLNKTDLVDAE 161 (323)
T ss_pred CCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---EEEEECCCCCCHH
T ss_conf 9989996887778699999860651224540413369998478865456779999999998679---9998364568988
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 4578888641001233431100013874267899
Q gi|254780941|r 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 (311)
Q Consensus 147 ~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~ 180 (311)
.+......+.+..+-.+++..|. .+.....+++
T Consensus 162 ~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 162 ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHC
T ss_conf 99999999997599986998123-6687788636
No 337
>KOG0071 consensus
Probab=98.41 E-value=1.6e-06 Score=62.09 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=94.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHH-HHHHH
Q ss_conf 89983389986889999986892021058888602127899973994899998798401012357532100234-55553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS-TIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~-~l~~a 102 (311)
.+..+|...|||+|++-.|.-.+.--|.+ ||-.++.. ++..+..|...|..|--+-+. .|+ ...+.
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~~ip---TvGFnvet-VtykN~kfNvwdvGGqd~iRp---------lWrhYy~gt 85 (180)
T KOG0071 19 RILMLGLDAAGKTTILYKLKLGQSVTTIP---TVGFNVET-VTYKNVKFNVWDVGGQDKIRP---------LWRHYYTGT 85 (180)
T ss_pred EEEEEECCCCCCEEHHHHHHCCCCCCCCC---CCCEEEEE-EEEEEEEEEEEECCCCHHHHH---------HHHHHCCCC
T ss_conf 17888126688400346876289764035---54204777-773006885212267122048---------898635677
Q ss_pred HHHCCCCHHHHH--HHCCHHHHHHHHH---HCCCCCEEEEEECCCHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 210011000010--0000001223454---42872025787211010---434578888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRE--LKVNIHDLLKEIA---KRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~--~~~~~~~il~~l~---~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
..++||+|+... ..+.-.++...+. -...++++..||-|+.. +.++....+.-.-.....-+.|.||.+|+|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCHHH
T ss_conf 25999982432104999999999985787661205898854665522169899888754231269960660353444027
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 26789999983662
Q gi|254780941|r 175 CDDVLNYLCSTLPL 188 (311)
Q Consensus 175 id~L~~~L~~~lpe 188 (311)
+.+-+.+|...+.+
T Consensus 166 L~eglswlsnn~~~ 179 (180)
T KOG0071 166 LKEGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 88899999855269
No 338
>KOG0091 consensus
Probab=98.37 E-value=3.1e-06 Score=60.23 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=91.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECC-CCCCEEEEEEEEEEECCEE--EEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9983389986889999986892021058-8886021278999739948--999987984010123575321002345555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQ--IVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~-k~~TTr~~i~gi~~~~~~q--iifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
..++|-.-||||+|+..++.-+.+-.|+ ..+.--.. +-+-..++++ +-+.||+|- +++...+.+...+
T Consensus 11 livigdstvgkssll~~ft~gkfaelsdptvgvdffa-rlie~~pg~riklqlwdtagq--------erfrsitksyyrn 81 (213)
T KOG0091 11 LIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFA-RLIELRPGYRIKLQLWDTAGQ--------ERFRSITKSYYRN 81 (213)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHCCCCCEEEEEEEECCCH--------HHHHHHHHHHHHC
T ss_conf 9998377524888999983376655679853367898-987347886789987302056--------8888878998654
Q ss_pred HHHHCCCCHHHHHHH-CCHHHHHHHHH-H---CCCC-CEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 321001100001000-00001223454-4---2872-0257872110104345-78888641001233431100013874
Q gi|254780941|r 102 ADIVCLVVDSHRELK-VNIHDLLKEIA-K---RSSR-LILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 102 aDiil~VvDa~~~~~-~~~~~il~~l~-~---~~~p-~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
+-.+++|.|.++... +.....+.+.. . -.++ +.+|-.|+|+....++ .+.++.+.+..+. ..+..||++|.|
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak~g~N 160 (213)
T KOG0091 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAKNGCN 160 (213)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCC
T ss_conf 6416999963544667778999999998538997059998524310122111139999999996594-589831457876
Q ss_pred HHHHHHHHHH
Q ss_conf 2678999998
Q gi|254780941|r 175 CDDVLNYLCS 184 (311)
Q Consensus 175 id~L~~~L~~ 184 (311)
+++-.+.|.+
T Consensus 161 VeEAF~mlaq 170 (213)
T KOG0091 161 VEEAFDMLAQ 170 (213)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 339
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=98.36 E-value=4.3e-07 Score=65.74 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=56.4
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH----HHHHHHHHHHH--CCCCCCCCCCCCCCCCCHH
Q ss_conf 21001100001000000012234544287202578721101043----45788886410--0123343110001387426
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE----RLLEQAEIANK--LVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~----~l~~~~~~~~~--~~~~~~i~~ISAk~g~Gid 176 (311)
.+|++|+|+.+........+.+.+. +.|+++|+||+|++.+. ++........+ -....+|+.+||++|.|++
T Consensus 73 ~lvv~VvDi~Df~gS~~~~l~~~ig--~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~~~dV~lvSak~g~gv~ 150 (367)
T PRK13796 73 ALVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGQGID 150 (367)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf 0899999744577651350898718--98489999823338876787899999999999759985528999465788999
Q ss_pred HHHHHHHHH
Q ss_conf 789999983
Q gi|254780941|r 177 DVLNYLCST 185 (311)
Q Consensus 177 ~L~~~L~~~ 185 (311)
+|.+.|.++
T Consensus 151 ~L~~~i~~~ 159 (367)
T PRK13796 151 ELLDAIEKY 159 (367)
T ss_pred HHHHHHHHH
T ss_conf 999999986
No 340
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.34 E-value=1.6e-07 Score=68.54 Aligned_cols=123 Identities=26% Similarity=0.385 Sum_probs=69.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-------CC-CEEEECC---CCC-----CEEEEEEEE----E-----------EE
Q ss_conf 8512189983389986889999986-------89-2021058---888-----602127899----9-----------73
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFV-------GA-KVSIVTH---KVQ-----TTRSIVRGI----V-----------SE 67 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~-------g~-~vsivS~---k~~-----TTr~~i~gi----~-----------~~ 67 (311)
..+++.|++||+|+|||+|.+=.|. |. +|+.+|- +.+ -|--.|.|+ + ..
T Consensus 207 ~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~ 286 (412)
T PRK05703 207 LEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQL 286 (412)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 45673699988888756769999999999972998179998376777799999999997197379847999999999871
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 994899998798401012357532100234555532100110000100000001223454428720257872110104
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
.++.+|||||||.. +++...-.-.+......... -+++|+.++-.. .+..++++.+...+. -=++++|.|-...
T Consensus 287 ~~~dlILIDTaG~s-~~d~~~~~eL~~~~~~~~~~-~~~LVlsat~~~-~dl~~i~~~f~~~~~-~~lI~TKlDEt~~ 360 (412)
T PRK05703 287 ANCDLILIDTAGRS-QRDPRLISELKALIENSKPI-DVYLVLSATTKY-RDLKDIVKHFSRLPL-DGLILTKLDETSS 360 (412)
T ss_pred CCCCEEEEECCCCC-CCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCH-HHHHHHHHHHCCCCC-CEEEEEEECCCCC
T ss_conf 58997999689889-78999999999998624887-189997598998-999999998467999-8799971128998
No 341
>KOG0086 consensus
Probab=98.34 E-value=1.3e-06 Score=62.68 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=87.0
Q ss_pred CCCCCCCCEE-EEEECCCCCCHHHHHHHHHCCCEEE-ECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCC
Q ss_conf 2436851218-9983389986889999986892021-05888860212789997399--489999879840101235753
Q gi|254780941|r 15 FVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSI-VTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKL 90 (311)
Q Consensus 15 ~~~~~~ksg~-VaivG~pN~GKSTL~N~l~g~~vsi-vS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~ 90 (311)
||.|.+-..| +.++|..+.|||-|+..++..+--- +|+..+.-- -.-|++.+. ..+-+.||+|- ++
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveF--gSrIinVGgK~vKLQIWDTAGQ--------Er 70 (214)
T KOG0086 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEF--GSRIVNVGGKTVKLQIWDTAGQ--------ER 70 (214)
T ss_pred CCCHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE--CCCEEEECCCEEEEEEEECCCH--------HH
T ss_conf 9511342430268864688863279999998641365464420220--1102540571899998634257--------88
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH--HHHHHHHHHCCCCCCC
Q ss_conf 2100234555532100110000100000-001223454---428720257872110104345--7888864100123343
Q gi|254780941|r 91 MIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL--LEQAEIANKLVFIEKT 164 (311)
Q Consensus 91 ~~~~~~~~l~~aDiil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l--~~~~~~~~~~~~~~~i 164 (311)
+...+.+...+|-..++|.|++....-. ....+...+ ..++-++++-||.|+-...++ ++.....++.. . -.
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-l-~f 148 (214)
T KOG0086 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-L-MF 148 (214)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCC-E-EE
T ss_conf 999999875365642799852455569999998887776479967999937712144121003899886633031-1-11
Q ss_pred CCCCCCCCCCHHHHH
Q ss_conf 110001387426789
Q gi|254780941|r 165 FMVSATKGHGCDDVL 179 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~ 179 (311)
...||++|.|+++-.
T Consensus 149 lETSa~TGeNVEEaF 163 (214)
T KOG0086 149 LETSALTGENVEEAF 163 (214)
T ss_pred EEECCCCCCCHHHHH
T ss_conf 220232355689999
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=4.9e-07 Score=65.39 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=59.1
Q ss_pred HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH----HHHHHHHHHHH--CCCCCCCCCCCCCCCC
Q ss_conf 55321001100001000000012234544287202578721101043----45788886410--0123343110001387
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE----RLLEQAEIANK--LVFIEKTFMVSATKGH 173 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~----~l~~~~~~~~~--~~~~~~i~~ISAk~g~ 173 (311)
....+|++|||+.+....-...+.+.+. +.|+++|+||+|++.+. .+...+....+ -....+|+.+||++|.
T Consensus 62 ~~~~lVv~VvDi~Df~gS~~~~l~~~~~--~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~~V~lvSa~~g~ 139 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGN 139 (360)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 3683799998641477653464999838--98589999805428876787999999999999859983668999688898
Q ss_pred CHHHHHHHHHHH
Q ss_conf 426789999983
Q gi|254780941|r 174 GCDDVLNYLCST 185 (311)
Q Consensus 174 Gid~L~~~L~~~ 185 (311)
|+++|.+.|.++
T Consensus 140 gi~~l~~~i~~~ 151 (360)
T TIGR03597 140 GIDELLDKIKKA 151 (360)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999987
No 343
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.24 E-value=4.4e-07 Score=65.71 Aligned_cols=116 Identities=23% Similarity=0.381 Sum_probs=67.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH-------C-CCEEEECCCCCCEE----------EEEEEE---------------EEE
Q ss_conf 12189983389986889999986-------8-92021058888602----------127899---------------973
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFV-------G-AKVSIVTHKVQTTR----------SIVRGI---------------VSE 67 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~-------g-~~vsivS~k~~TTr----------~~i~gi---------------~~~ 67 (311)
+.|.+++||+|+|||+|-+=.|. | .+|+.+|- -|=| -.|.|+ ...
T Consensus 175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~--DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l 252 (404)
T PRK06995 175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTT--DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAEL 252 (404)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 4755898668887637589999999999838983799976--87547899999999987595599959999999999970
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH---HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 9948999987984010123575321002345555---3210011000010000000122345442872025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~---aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
.++.+|||||+|.. +++. .+.+.. ..+.. ..-.++|+.++... .+..++++.+...+ +-=++++|.|-..
T Consensus 253 ~~~dlILIDTaGrs-~rD~---~~~e~l-~~l~~~~~~~~~~LVLsat~~~-~dl~~i~~~f~~~~-~~~~I~TKLDEt~ 325 (404)
T PRK06995 253 RNKHIVLIDTVGMS-QRDR---MVSEQI-AMLHGAGAPVQRLLLLNATSHG-DTLNEVVQAYRGPG-LAGCILTKLDEAA 325 (404)
T ss_pred CCCCEEEEECCCCC-CCCH---HHHHHH-HHHHHCCCCCEEEEEECCCCCH-HHHHHHHHHHCCCC-CCEEEEECCCCCC
T ss_conf 89999998099989-7688---899999-9997357885289997798999-99999999844699-9839983040679
Q ss_pred H
Q ss_conf 4
Q gi|254780941|r 145 P 145 (311)
Q Consensus 145 ~ 145 (311)
.
T Consensus 326 ~ 326 (404)
T PRK06995 326 S 326 (404)
T ss_pred C
T ss_conf 7
No 344
>KOG0072 consensus
Probab=98.22 E-value=1.2e-06 Score=62.89 Aligned_cols=150 Identities=25% Similarity=0.314 Sum_probs=79.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH-HHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399489999879840101235753210023-455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW-STIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~-~~l~~a 102 (311)
.+-++|.-++||.|++=++---.+ |+.+|- --.+ ...+++++-.+-+.|.-|-. .+ +-.| ...++.
T Consensus 20 rililgldGaGkttIlyrlqvgev--vttkPt-igfn-ve~v~yKNLk~~vwdLggqt--------Si-rPyWRcYy~dt 86 (182)
T KOG0072 20 RILILGLDGAGKTTILYRLQVGEV--VTTKPT-IGFN-VETVPYKNLKFQVWDLGGQT--------SI-RPYWRCYYADT 86 (182)
T ss_pred EEEEEECCCCCEEEEEEECCCCCC--CCCCCC-CCCC-CCCCCCCCCCCEEEECCCCC--------CC-CHHHHHHHCCC
T ss_conf 789850367770699987125864--345899-8868-02155366551246715864--------33-27788876066
Q ss_pred HHHCCCCHHHHHHHCC-----HHHHHHHHHHCCCCCEEEEEECCCHHHH---HHHH--HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2100110000100000-----0012234544287202578721101043---4578--8886410012334311000138
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-----IHDLLKEIAKRSSRLILILNKIDCVKPE---RLLE--QAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-----~~~il~~l~~~~~p~IiVlNKiDlv~~~---~l~~--~~~~~~~~~~~~~i~~ISAk~g 172 (311)
|.++||||+++...-. ...++.+-.-.+..+++++||.|..... ++.. ....+... .-.||..||.+|
T Consensus 87 ~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r--~~~Iv~tSA~kg 164 (182)
T KOG0072 87 DAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR--IWQIVKTSAVKG 164 (182)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHH--EEEEEEECCCCC
T ss_conf 628999716543443146899999855486548469998604552135569999998482887502--268876011446
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7426789999983662
Q gi|254780941|r 173 HGCDDVLNYLCSTLPL 188 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe 188 (311)
.|+|+..+||..-+++
T Consensus 165 ~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072 165 EGLDPAMDWLQRPLKS 180 (182)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 6776789999877760
No 345
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=98.20 E-value=2e-06 Score=61.42 Aligned_cols=57 Identities=30% Similarity=0.418 Sum_probs=41.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC---CEEEECCC----CCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 18998338998688999998689---20210588----88602127899973994899998798401
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA---KVSIVTHK----VQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~---~vsivS~k----~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
...+++|+++||||||+|+|... ++..||.+ -||||+.-+--+..+.+ ++|||||..
T Consensus 172 k~tv~~G~SGVGKSSLIN~L~p~~~l~TgeVS~k~~rGrHTTr~~eL~~L~~Gg~---iiDTPGf~~ 235 (351)
T PRK12289 172 KITVVAGPSGVGKSSLINRLIPDVELRVGEVSGKLQRGRHTTRHVELFELPNGGL---LADTPGFNQ 235 (351)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCE---EEECCCCCC
T ss_conf 8699981798878898876374123456654064899878355168999489958---997979887
No 346
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.18 E-value=3.1e-06 Score=60.19 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=55.4
Q ss_pred EEEECCCCCCHHHHHHHHHC------CCEEEE-----CCCCC------CEEE------EEEEEE----------------
Q ss_conf 99833899868899999868------920210-----58888------6021------278999----------------
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVG------AKVSIV-----THKVQ------TTRS------IVRGIV---------------- 65 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g------~~vsiv-----S~k~~------TTr~------~i~gi~---------------- 65 (311)
|+|-|+|.||||||+++|+. .+++.. |++.+ -+|- +-..+.
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415799836863466665420468899
Q ss_pred ------EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ------73994899998798401012357532100234555532100110000100000001223454428720257872
Q gi|254780941|r 66 ------SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 (311)
Q Consensus 66 ------~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNK 139 (311)
...++.++|+.|.|.-. ......+-+|..++|++...+-..+ . .+..-....=++|+||
T Consensus 82 ~~i~~l~~~g~D~IiIETvGvGQ-----------se~~i~~~aD~~i~v~~p~~GD~iQ---~-~K~gi~e~aDl~vvNK 146 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQ-----------SEVDIASMADTTVVVMAPGAGDDIQ---A-IKAGIMEIADIVVVNK 146 (148)
T ss_pred HHHHHHHHCCCCEEEEECCCCCC-----------CHHHHHHHCCEEEEEECCCCCCHHH---H-CCCCHHHCCCEEEEEC
T ss_conf 99999997599989997487775-----------6026554356699996368873776---1-1228521246999937
Q ss_pred CC
Q ss_conf 11
Q gi|254780941|r 140 ID 141 (311)
Q Consensus 140 iD 141 (311)
+|
T Consensus 147 ~D 148 (148)
T cd03114 147 AD 148 (148)
T ss_pred CC
T ss_conf 89
No 347
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=98.14 E-value=1.5e-05 Score=55.78 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=71.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CEEEECCCCC-------------CEEEEEE-E-E---------------E--EE
Q ss_conf 998338998688999998689-----2021058888-------------6021278-9-9---------------9--73
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQ-------------TTRSIVR-G-I---------------V--SE 67 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~-------------TTr~~i~-g-i---------------~--~~ 67 (311)
..|.|..+|||+||+|+++.+ +++++-+--+ .....+. | + . ..
T Consensus 3 ~iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~~~ 82 (174)
T pfam02492 3 TVLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELLRETGAEIVELNNGCICCTIREDLSMVLEALLELKL 82 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99934887889999999998444898479999336530207999870696189974886645433369999999985578
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCH--HHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 9948999987984010123575321002345555321001100001000000--01223454428720257872110104
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI--HDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~--~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
.+...+|+-|-|+..+..... . ..--..+.++.|+|+........ ..+.+++...+ ++++||+|+++.
T Consensus 83 ~~~d~iiIE~sGla~p~~i~~------~-~~~~~~~~~i~vvDa~~~~~~~~~~~~~~~Qi~~AD---~vvlNK~Dl~~~ 152 (174)
T pfam02492 83 PRLDLLFIETTGLACPAPVLD------L-RSDLGLDGVVTVVDVKNFTEGEDIPEKAPDQIAFAD---LIVINKTDLAPA 152 (174)
T ss_pred CCCCEEEEECCCCCCHHHHHH------H-HHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCC---EEEEEHHHCCCC
T ss_conf 999999995876677077776------5-320265459999972343300200789999998769---999846653782
Q ss_pred HH-HHHHHHHHHHCCCCCCCCC
Q ss_conf 34-5788886410012334311
Q gi|254780941|r 146 ER-LLEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 146 ~~-l~~~~~~~~~~~~~~~i~~ 166 (311)
.+ +....+......+..+|+|
T Consensus 153 ~~~l~~~~~~i~~lNP~A~Iip 174 (174)
T pfam02492 153 VGALEKLEADLRRLNPEAPIIP 174 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEECC
T ss_conf 7699999999999789993669
No 348
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.11 E-value=1.5e-05 Score=55.69 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=71.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC----CCEEEECCCCC----------CEEEEE----EE-EEEE-----------------
Q ss_conf 899833899868899999868----92021058888----------602127----89-9973-----------------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQ----------TTRSIV----RG-IVSE----------------- 67 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g----~~vsivS~k~~----------TTr~~i----~g-i~~~----------------- 67 (311)
...|-|.-+|||+||+|+|+. .+++.+=+--+ ..-..+ .| ++..
T Consensus 6 VtiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~~~~ 85 (317)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLD 85 (317)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 89983088889999999997277899789998376145332988735653268844773687305228999999998664
Q ss_pred -CC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCH--HHHHHHHHHCCCCCEEEEEECCC
Q ss_conf -99--48999987984010123575321002345555321001100001000000--01223454428720257872110
Q gi|254780941|r 68 -KE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI--HDLLKEIAKRSSRLILILNKIDC 142 (311)
Q Consensus 68 -~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~--~~il~~l~~~~~p~IiVlNKiDl 142 (311)
++ ...+++-|-|+.++..-+...+........-..|.++-||||.......+ ....+++.-.+ ++++||+|+
T Consensus 86 ~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~~~Qi~~AD---~illnK~Dl 162 (317)
T PRK11537 86 RGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD---RILLTKTDV 162 (317)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCC---EEEEECCCC
T ss_conf 35777547999625778839999998612565653203655999866555766530346676663186---899742002
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1043457888864100123343110
Q gi|254780941|r 143 VKPERLLEQAEIANKLVFIEKTFMV 167 (311)
Q Consensus 143 v~~~~l~~~~~~~~~~~~~~~i~~I 167 (311)
+...+ ...+.+....+...++..
T Consensus 163 v~~~~--~l~~~l~~lNp~A~i~~~ 185 (317)
T PRK11537 163 AGEAE--KLRERLARINARAPVYTV 185 (317)
T ss_pred CCHHH--HHHHHHHHHCCCCCEEEE
T ss_conf 36599--999999986899848996
No 349
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.11 E-value=1.2e-05 Score=56.30 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=59.5
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCCEEEECCCCCCEEEEEEEEE---EEC---CEEEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf 8998338998688999998-68920210588886021278999---739---9489999879840101235753210023
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRF-VGAKVSIVTHKVQTTRSIVRGIV---SEK---ESQIVFLDTPGIFNAKDSYHKLMIRLSW 96 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l-~g~~vsivS~k~~TTr~~i~gi~---~~~---~~qiifvDTPG~~~~~~~l~~~~~~~~~ 96 (311)
.-.|||+|++||||+++.= +.-.++- . .++..+.|+- +.+ ..+-|++||+|=+...+.-. .-.+..|
T Consensus 113 WYlviG~~gsGKTt~l~~Sgl~fPl~~---~--~~~~~~~g~ggt~~cdwwft~~AVliDtaGry~~Q~~~~-~~d~~~W 186 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNSGLKFPLAE---R--LGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDP-EEDAAAW 186 (1169)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCC---C--CCHHHCCCCCCCCCCCEEEECCEEEEECCCCEECCCCCC-HHHHHHH
T ss_conf 589978999866899983799887741---0--011221588998555716527879994797602688864-0018999
Q ss_pred HHH----------HHHHHHCCCCHHHHHHHCCHH---HHHHHHH----------HCCCCCEEEEEECCCHH
Q ss_conf 455----------553210011000010000000---1223454----------42872025787211010
Q gi|254780941|r 97 STI----------KHADIVCLVVDSHRELKVNIH---DLLKEIA----------KRSSRLILILNKIDCVK 144 (311)
Q Consensus 97 ~~l----------~~aDiil~VvDa~~~~~~~~~---~il~~l~----------~~~~p~IiVlNKiDlv~ 144 (311)
..+ .-.+.|++.||+.+-...... .....++ ....|+.++++|+|++.
T Consensus 187 ~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf 99999998648989987689997899974789999999999999999999998299877599866401230
No 350
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=98.09 E-value=2.5e-05 Score=54.37 Aligned_cols=172 Identities=22% Similarity=0.337 Sum_probs=104.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC----CE---------------EEECCCCCCEE------EEEEEEEEE-CCEEEEEEEC
Q ss_conf 8998338998688999998689----20---------------21058888602------127899973-9948999987
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA----KV---------------SIVTHKVQTTR------SIVRGIVSE-KESQIVFLDT 77 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~----~v---------------sivS~k~~TTr------~~i~gi~~~-~~~qiifvDT 77 (311)
||++||+--.|||||+-++.-= ++ |.......||- .++.-.++. -+..+.+||.
T Consensus 19 YiGvVGpVRTGKSTfIKkFMeLlvLPNi~n~~~k~Ra~DELPQSaAGktimTTEPKFvPn~Avei~in~~~k~~vRLVDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNIENEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEECCCCCCCCCHHHHEEHEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 89866274278521111100102238886111120231068877686802104878668851899864882078999986
Q ss_pred CCCH-HHCC----CCCCCCCCHHHHH----------------H-HHHHHHCCC-CHHH-----H-HHHCCHHHHHHHHHH
Q ss_conf 9840-1012----3575321002345----------------5-553210011-0000-----1-000000012234544
Q gi|254780941|r 78 PGIF-NAKD----SYHKLMIRLSWST----------------I-KHADIVCLV-VDSH-----R-ELKVNIHDLLKEIAK 128 (311)
Q Consensus 78 PG~~-~~~~----~l~~~~~~~~~~~----------------l-~~aDiil~V-vDa~-----~-~~~~~~~~il~~l~~ 128 (311)
-|+. .+.. .-.-+|+...|-- + +++-+-++| .|++ + ..=+...+.+++|+.
T Consensus 99 VGY~V~GA~GY~ee~kprMv~TPWYd~eIPF~EAAEIGTrKVI~dHSTiG~lvTTDGsI~dI~RedYv~AEERVveELKe 178 (492)
T TIGR02836 99 VGYIVKGALGYEEEDKPRMVSTPWYDEEIPFEEAAEIGTRKVISDHSTIGLLVTTDGSITDIPREDYVEAEERVVEELKE 178 (492)
T ss_pred ECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 23015785450027864011588888888723551237710115775078997117840346731340033577677640
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCH
Q ss_conf 28720257872110104345788886410012334311000138742678999998366223568964334-302
Q gi|254780941|r 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS-DLP 202 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~T-d~~ 202 (311)
.++|+|+|||=.-=..++ ..+..+.+++.++. .|+++|. ...++.++...|.+.|.| ||=-.+. |.|
T Consensus 179 ~~KPFIilLNs~~P~~pE-T~~L~~eLe~KYDv-pV~~~~v-~~m~~~Di~~vL~~~LyE----FPi~evn~dLP 246 (492)
T TIGR02836 179 LNKPFIILLNSTHPLAPE-TKALRKELEEKYDV-PVLVVDV-LEMKIKDILSVLEKVLYE----FPILEVNIDLP 246 (492)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHHHHHCCC-CEEEEEC-CCCCHHHHHHHHHHHHHH----CCCEEEECCCC
T ss_conf 799679997688978865-79999986520884-4589640-002446699999985410----68403534784
No 351
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.07 E-value=2.2e-05 Score=54.68 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=73.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCCC-----EEEEEEEE-----EE----------------E
Q ss_conf 189983389986889999986------892021058---8886-----02127899-----97----------------3
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQT-----TRSIVRGI-----VS----------------E 67 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~T-----Tr~~i~gi-----~~----------------~ 67 (311)
..|+++|+++|||+|-+=.|. |.+|+.+|- +++. +--.+.++ .. .
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~ 81 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKA 81 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999899999889999999999997799289997587768899999999986398178148777878999999999884
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHH---HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 9948999987984010123575321002---3455553210011000010000000122345442872025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLS---WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~---~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
.++.++|+||||.... +..+.+.. .... ..+-+++|+|++.+.. +...+......-.+-=++++|.|-..
T Consensus 82 ~~~D~IlIDTaGr~~~----d~~~~~el~~~~~~~-~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~~~I~TKlDet~ 154 (196)
T pfam00448 82 ENYDVVLVDTAGRLQN----DKNLMDELKKIKRVI-APDEVLLVLDATTGQN--ALNQAKAFNEAVGITGVILTKLDGDA 154 (196)
T ss_pred CCCCEEEEECCCCCCC----CHHHHHHHHHHHHHC-CCCCEEEEEECCCCCC--HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 6899999989998747----677899999998522-8730289985677821--37899987600477626888405788
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCHHHHH
Q ss_conf 43457888864100123343110001-387426789
Q gi|254780941|r 145 PERLLEQAEIANKLVFIEKTFMVSAT-KGHGCDDVL 179 (311)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~i~~ISAk-~g~Gid~L~ 179 (311)
+-. ......... =.|||.. +|+++++|.
T Consensus 155 ~~G--~~l~~~~~~-----~~Pi~~~t~Gq~v~Dl~ 183 (196)
T pfam00448 155 KGG--AALSIAAET-----GKPIKFIGVGEKIDDLE 183 (196)
T ss_pred CCC--HHHHHHHHH-----CCCEEEEECCCCHHHCC
T ss_conf 752--999899998-----96979996799812063
No 352
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.05 E-value=9.3e-06 Score=57.13 Aligned_cols=117 Identities=23% Similarity=0.264 Sum_probs=62.5
Q ss_pred EEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCCC-----EEEEEEE-----EEE----------------EC
Q ss_conf 89983389986889999986------892021058---8886-----0212789-----997----------------39
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQT-----TRSIVRG-----IVS----------------EK 68 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~T-----Tr~~i~g-----i~~----------------~~ 68 (311)
.|+++|+|+|||+|-+=.|. |.+++.++- +++- |--.+.| ..+ ..
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998999998899999999999976992899974887577999999999974985992277558799999999998756
Q ss_pred CEEEEEEECCCCHHHCCCCCCCCCCHHH--HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 9489999879840101235753210023--45555321001100001000000012234544287202578721101043
Q gi|254780941|r 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSW--STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 (311)
Q Consensus 69 ~~qiifvDTPG~~~~~~~l~~~~~~~~~--~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~ 146 (311)
++.++|+||||..... ..+.+... ......+.+++|+|+..+. +..+........-..-=++++|.|-..+-
T Consensus 82 ~~D~IlIDTaGr~~~d----~~~~~el~~l~~~~~p~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~~~I~TKlDet~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQID----ENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALGITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECCCCCCCC----HHHHHHHHHHHHHHCCCCCEEECCCCCHH--HHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 8998999788878799----99999999998644897215742465506--58999999874279978999714389975
No 353
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=1.6e-05 Score=55.57 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=66.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC--CC-----CEEEEEEE-----EE---------EECCEEE
Q ss_conf 2189983389986889999986-------89202105-88--88-----60212789-----99---------7399489
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFV-------GAKVSIVT-HK--VQ-----TTRSIVRG-----IV---------SEKESQI 72 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~-------g~~vsivS-~k--~~-----TTr~~i~g-----i~---------~~~~~qi 72 (311)
.+.|++||+++|||+|-+-.|. |.+|+.++ +. .+ -|--.|.| +. ...++.+
T Consensus 223 ~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~Dl 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCE
T ss_conf 62999989999888999999999999974992799952665377999999999985994599518999999998569999
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHH-H-HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 999879840101235753210023455553-2-100110000100000001223454428720257872110104
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHA-D-IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~a-D-iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
|||||+|-. +++...-.-.+.....+... + -+.+|+.++... .+..++++.+...+. -=++++|.|-...
T Consensus 303 ILIDTAGrS-~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~-~dl~~ii~~f~~l~~-~~lIfTKLDET~s 374 (432)
T PRK12724 303 ILIDTAGYS-HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYESLNY-RRILLTKLDEADF 374 (432)
T ss_pred EEEECCCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHHCCCCC-CEEEEEECCCCCC
T ss_conf 999299989-78999999999999863667885179999788998-999999998426999-8499971227798
No 354
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=3.2e-05 Score=53.61 Aligned_cols=123 Identities=25% Similarity=0.352 Sum_probs=66.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHC-------CC---EEEEC-C--CCCC-----EE-----EEEEEEE---------
Q ss_conf 685121899833899868899999868-------92---02105-8--8886-----02-----1278999---------
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVG-------AK---VSIVT-H--KVQT-----TR-----SIVRGIV--------- 65 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g-------~~---vsivS-~--k~~T-----Tr-----~~i~gi~--------- 65 (311)
++.+...+++||+++|||+|-+-.|.. .+ |+.++ + +++. |- -++..+.
T Consensus 170 ~~~k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l 249 (388)
T PRK12723 170 DNLKKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHH
T ss_conf 35576289998998875787999999999986267677379998078758899999999999788069857889999999
Q ss_pred -EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH--HHH-HCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf -739948999987984010123575321002345555--321-0011000010000000122345442872025787211
Q gi|254780941|r 66 -SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH--ADI-VCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 (311)
Q Consensus 66 -~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~--aDi-il~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiD 141 (311)
...++.++|+||+|... ++ ..........++. .|. +++|++++.... +...++..+...+ +--++++|.|
T Consensus 250 ~~~~~~D~IlIDTAGrs~-~d---~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~-d~~~i~~~f~~~~-~~~~I~TKlD 323 (388)
T PRK12723 250 TQSKDFDLVLIDTIGKSP-KD---FMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DIKEIFHQFSPFS-YKTVIFTKLD 323 (388)
T ss_pred HHHCCCCEEEEECCCCCC-CC---HHHHHHHHHHHHHCCCCCEEEEEECCCCCHH-HHHHHHHHHCCCC-CCEEEEEECC
T ss_conf 972499999995899885-68---9999999999974189845999987989999-9999999842799-9849998322
Q ss_pred CHHHH
Q ss_conf 01043
Q gi|254780941|r 142 CVKPE 146 (311)
Q Consensus 142 lv~~~ 146 (311)
-...-
T Consensus 324 Et~~~ 328 (388)
T PRK12723 324 ETTCV 328 (388)
T ss_pred CCCCC
T ss_conf 78986
No 355
>KOG0097 consensus
Probab=97.99 E-value=2.4e-05 Score=54.43 Aligned_cols=143 Identities=22% Similarity=0.241 Sum_probs=85.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEE--EE--EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 998338998688999998689202105888860212789--99--73994899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG--IV--SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~g--i~--~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
-.|+|--+||||-|+..++..+.-+ +-|+|---. .| ++ ......+-+.||.|- +++...+.+...
T Consensus 14 yiiigdmgvgkscllhqftekkfma--dcphtigve-fgtriievsgqkiklqiwdtagq--------erfravtrsyyr 82 (215)
T KOG0097 14 YIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVE-FGTRIIEVSGQKIKLQIWDTAGQ--------ERFRAVTRSYYR 82 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CCCCCCCEE-CCEEEEEEECCEEEEEEEECCCH--------HHHHHHHHHHHC
T ss_conf 8887246554778888887767750--598524031-23069996074899997313257--------989998898860
Q ss_pred HHHHHCCCCHHHHHHHCCHH-HHHHHHHHC---CCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000000-122345442---8720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKVNIH-DLLKEIAKR---SSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~~~-~il~~l~~~---~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
++-..++|.|.++..+-... ..+...+.. +.-++++-||.|+-.+.++ .+.++.+.+..+. -....||++|.|+
T Consensus 83 gaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~saktg~nv 161 (215)
T KOG0097 83 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEASAKTGQNV 161 (215)
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCE-EEEEECCCCCCCH
T ss_conf 666506899741133466688888653414899718999656111445037868999988875590-8998123236766
Q ss_pred HHHH
Q ss_conf 6789
Q gi|254780941|r 176 DDVL 179 (311)
Q Consensus 176 d~L~ 179 (311)
++-.
T Consensus 162 edaf 165 (215)
T KOG0097 162 EDAF 165 (215)
T ss_pred HHHH
T ss_conf 8999
No 356
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.97 E-value=7.5e-06 Score=57.72 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=40.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---EEEECCC----CCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 89983389986889999986892---0210588----88602127899973994899998798401
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK---VSIVTHK----VQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~---vsivS~k----~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
..+++|.++||||||+|+|++.. ...+|.+ -|||++..+-.+ ++. .++|||||.+
T Consensus 166 ~sv~~G~SGVGKSSLiN~L~~~~~~~t~~is~~~~rGrHTTt~~~l~~l--~~G--~iiDTPG~r~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALVPELELKTGEISEALGRGKHTTTHVELYDL--PGG--LLIDTPGFSS 227 (298)
T ss_pred EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEC--CCC--EEEECCCCCC
T ss_conf 6999878988788888760714445667556651897213304689986--997--5981898775
No 357
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.97 E-value=9.1e-06 Score=57.19 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=65.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC--------CEEEECCCCCCEEE---------------EEEEEE----------EE
Q ss_conf 1218998338998688999998689--------20210588886021---------------278999----------73
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGA--------KVSIVTHKVQTTRS---------------IVRGIV----------SE 67 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~--------~vsivS~k~~TTr~---------------~i~gi~----------~~ 67 (311)
+.|+|++||+++|||+|-+-.|... +|+++|- -|=|- ++..+. -.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt--DtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT--DTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf 6857999899887588799999999975325760689971--44115289999999998699559963999999999985
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 99489999879840101235753210023455553210011000010000000122345442872025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
.++.++||||.|-. +.+...-.-.+...+.-.+ .-+.+|++++-. ..+..++++.++..+. --++++|.|-..
T Consensus 280 ~~~d~ILVDTaGrs-~~D~~~i~el~~~~~~~~~-i~~~Lvlsat~K-~~dlkei~~~f~~~~i-~~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRS-QYDKEKIEELKELIDVSHS-IEVYLVLSATTK-YEDLKEIIKQFSLFPI-DGLIFTKLDETT 352 (407)
T ss_pred HCCCEEEEECCCCC-CCCHHHHHHHHHHHHCCCC-CEEEEEEECCCC-HHHHHHHHHHHCCCCC-CEEEEECCCCCC
T ss_conf 31888999689988-3378999999999703566-217999845764-6889999997245886-616897133567
No 358
>KOG0469 consensus
Probab=97.96 E-value=5.7e-06 Score=58.52 Aligned_cols=112 Identities=25% Similarity=0.366 Sum_probs=75.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEEC-CCCCCEEEE-------EEEEE---------------------EE---CCE
Q ss_conf 18998338998688999998689202105-888860212-------78999---------------------73---994
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSI-------VRGIV---------------------SE---KES 70 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS-~k~~TTr~~-------i~gi~---------------------~~---~~~ 70 (311)
-..+++.....|||||..+|+.+- .|+| .+++-||.. -+||. .. .++
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kA-gIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469 20 RNMSVIAHVDHGKSTLTDSLVQKA-GIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH-CEEEECCCCCCCCCCCCCCHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCE
T ss_conf 420489984378550067787761-5124122678512434101565565763201320121317679985177877633
Q ss_pred EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 8999987984010123575321002345555321001100001000000012234544287202578721101
Q gi|254780941|r 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 (311)
Q Consensus 71 qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv 143 (311)
-+.++|.||..+- ...+-.++.-.|..|+|||.-.+.--+.+..+.+.....+.-++++||+|..
T Consensus 99 LiNLIDSPGHVDF--------SSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469 99 LINLIDSPGHVDF--------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred EEEECCCCCCCCC--------HHHHHHEEEECCCCEEEEECCCCEEECHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 6895168985452--------3442310473267089997247448525999999987433524774146678
No 359
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.95 E-value=8.4e-06 Score=57.39 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=38.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC---CEEEECCC----CCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 8998338998688999998689---20210588----88602127899973994899998798401
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA---KVSIVTHK----VQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~---~vsivS~k----~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
..+++|.++||||||+|+|+.. +...+|.+ -|||+...+--+..+.. ++|||||.+
T Consensus 209 tsvf~GqSGVGKSSLiN~L~p~~~~~tgeIS~~~~~GrHTTt~~~L~~l~~gG~---lIDTPG~re 271 (344)
T PRK12288 209 ISIFVGQSGVGKSSLINALLPEAEILVGDVSENSGLGQHTTTTARLYHFPHGGD---LIDSPGVRE 271 (344)
T ss_pred EEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCE---EEECCCCCC
T ss_conf 599980687678888761075334223201433388664011689999289987---973898765
No 360
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.92 E-value=0.00054 Score=45.70 Aligned_cols=220 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE-------------------EEECCCCCCEEE---EEEE--EEEECC--EEEEEEEC
Q ss_conf 899833899868899999868920-------------------210588886021---2789--997399--48999987
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV-------------------SIVTHKVQTTRS---IVRG--IVSEKE--SQIVFLDT 77 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v-------------------sivS~k~~TTr~---~i~g--i~~~~~--~qiifvDT 77 (311)
|+++||+.-.||||++.++...-| |.....--||-- +..+ +.-.++ ..+.++|.
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS~aGktIMTTEPKFVP~eAv~I~l~~~~~~kVRLiDC 98 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQSGSGKTIMTTEPKFVPNEAVEIKLDDGLKFKVRLVDC 98 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCEEEEEEEEE
T ss_conf 99962672067366999999985468889877877643037767899813336887665310488836984489999965
Q ss_pred CCCHH-H----CCCCCCCCCCHHHHH----------------HHHHHHHCCCC--HHHH------HHHCCHHHHHHHHHH
Q ss_conf 98401-0----123575321002345----------------55532100110--0001------000000012234544
Q gi|254780941|r 78 PGIFN-A----KDSYHKLMIRLSWST----------------IKHADIVCLVV--DSHR------ELKVNIHDLLKEIAK 128 (311)
Q Consensus 78 PG~~~-~----~~~l~~~~~~~~~~~----------------l~~aDiil~Vv--Da~~------~~~~~~~~il~~l~~ 128 (311)
-|+.- . ...-..+|++..|.. +.+-.-|-+|| |++- ..-+.....+++|+.
T Consensus 99 VGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~ELk~ 178 (492)
T pfam09547 99 VGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIEELKE 178 (492)
T ss_pred CCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 25675575555468975130489878887868887646541331577144999568875676644423579999999997
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCC-CCCCCCCC----C
Q ss_conf 287202578721101043457888864100123343110001387426789999983662---235-68964334----3
Q gi|254780941|r 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL---APW-VYSADQIS----D 200 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe---~~~-~y~~~~~T----d 200 (311)
.++|+++++|-.+-..++ .....+.+.+.++. .++|+++.. ..-+++...+.+.|.| ..- ++-+.++. +
T Consensus 179 i~KPFiillNs~~P~s~e-t~~L~~eL~ekY~v-~Vl~vnc~~-m~~~DI~~Il~~vLyEFPV~Ei~~~lP~Wve~L~~~ 255 (492)
T pfam09547 179 IGKPFIILLNSQRPYSEE-TKELRDELEEKYDV-PVLPVNCAQ-MTEEDITEILEEVLYEFPVKEININLPKWVEELETE 255 (492)
T ss_pred HCCCEEEEEECCCCCCHH-HHHHHHHHHHHHCC-CEEEEEHHH-CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCC
T ss_conf 099889998389989989-99999999998599-579967797-599999999999863388249986273688633887
Q ss_pred CHHHHHHHHHHHHHHH--------H---HHHCCCCCCEEEEEEEEECCCCCCEEEEEE
Q ss_conf 0256789987599999--------9---730045642047885331066772358999
Q gi|254780941|r 201 LPMFHFTAEITREKLF--------L---HLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 (311)
Q Consensus 201 ~~~~~~i~EiIREki~--------~---~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~ 247 (311)
+..+.-+-+.+|+.+= . ..-.|.+|--.+.++.+.. ..|...|...
T Consensus 256 Hwlk~~~~~~i~~~~~~i~~irDv~~~~~~~~~~e~i~~~~l~~i~l-g~G~a~i~~~ 312 (492)
T pfam09547 256 HWLKQSFIEAIKEALKGVRKIRDIDRAVEALSEYEFVEKVELEEINL-GTGTARIDVT 312 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEEC-CCCEEEEEEE
T ss_conf 64779999999999986558873998860456454165512213776-8847999997
No 361
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.91 E-value=1.1e-05 Score=56.61 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=40.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE---EEECCC----CCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 899833899868899999868920---210588----88602127899973994899998798401
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV---SIVTHK----VQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v---sivS~k----~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
.++++|.++||||||+|+|++... ..||.+ -|||+++.+-.+..+. .++|||||.+
T Consensus 163 ~~v~~G~SGvGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~L~~l~~gg---~iiDTPG~r~ 225 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFRE 225 (287)
T ss_pred EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCC---EEEECCCCCC
T ss_conf 89998899888899998746212125666677608985014157999928995---8986898763
No 362
>KOG1707 consensus
Probab=97.90 E-value=0.0002 Score=48.55 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=83.9
Q ss_pred CCCCEEEE-EECCCCCCHHHHHHHHHCCCEEEECCCCCCE--EEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCH
Q ss_conf 85121899-8338998688999998689202105888860--21278999739-94899998798401012357532100
Q gi|254780941|r 19 NSRSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRL 94 (311)
Q Consensus 19 ~~ksg~Va-ivG~pN~GKSTL~N~l~g~~vsivS~k~~TT--r~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~ 94 (311)
+.|.-|-+ ++|+.|+|||.|+++++|...+- +.. +|| +..+.-+...+ ..-+++-|.+-. ..+.+.. +.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~-~~~~~~~avn~v~~~g~~k~LiL~ei~~~--~~~~l~~---ke 493 (625)
T KOG1707 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNT-GTTKPRYAVNSVEVKGQQKYLILREIGED--DQDFLTS---KE 493 (625)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCCC-CCC-CCCCCCEEEEEEEECCCCCEEEEEECCCC--CCCCCCC---CC
T ss_conf 53014478887777774289999886334323-334-67787603243254154125888644754--2334567---54
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH--HHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 23455553210011000010000000122345--4428720257872110104345-78888641001233431100013
Q gi|254780941|r 95 SWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATK 171 (311)
Q Consensus 95 ~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l--~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~ 171 (311)
..||+++++.|++.+..-.....+... .....|++.|..|+|+-...+. .-+-......++....+++|.+.
T Consensus 494 -----~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707 494 -----AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred -----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHCCCCCCEEECCCC
T ss_conf -----200368885046773278999999987443257846999521453312103578838889971899980513578
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 874267899999836
Q gi|254780941|r 172 GHGCDDVLNYLCSTL 186 (311)
Q Consensus 172 g~Gid~L~~~L~~~l 186 (311)
.+=.+|...|...+
T Consensus 569 -~~s~~lf~kL~~~A 582 (625)
T KOG1707 569 -LSSNELFIKLATMA 582 (625)
T ss_pred -CCCCHHHHHHHHHH
T ss_conf -88756999999860
No 363
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=97.85 E-value=4.5e-05 Score=52.70 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=95.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC----CEEE------ECCCC-----CCEEEEEEEEEEECCEEEEEEECCCCHHHCCCC
Q ss_conf 18998338998688999998689----2021------05888-----860212789997399489999879840101235
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA----KVSI------VTHKV-----QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~----~vsi------vS~k~-----~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l 87 (311)
-.|+-+|.-..||+||.-+++.. ..+. +..-| +-|-+...--+......+.-+|.||..
T Consensus 13 ~n~GtiGhvdhGkttl~aa~~~~l~~~~~~~~~~y~~id~aPee~~rGiti~~~~vey~~~~rhyahvdCPGha------ 86 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGKAAAKKYDEIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA------ 86 (394)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEEECCCCCCEEEECCCCHH------
T ss_conf 33301210015505789999999875100356767765237211334515653355421467515763188626------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHHHHH-----HHHCC--
Q ss_conf 7532100234555532100110000100000001223454428720257-872110104345788886-----41001--
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKIDCVKPERLLEQAEI-----ANKLV-- 159 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiV-lNKiDlv~~~~l~~~~~~-----~~~~~-- 159 (311)
..++.........|..++|+.+.+...++..+.+-..+..+.|.++| +||.|.++++++++..+. +....
T Consensus 87 --dyvknmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~~~f~ 164 (394)
T TIGR00485 87 --DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSEYDFP 164 (394)
T ss_pred --HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --788876410111176079995278888741121001002687657876402332242789999999999998740789
Q ss_pred -CCCCCCCCCCCCC-CCHHHHHHHHHHHC
Q ss_conf -2334311000138-74267899999836
Q gi|254780941|r 160 -FIEKTFMVSATKG-HGCDDVLNYLCSTL 186 (311)
Q Consensus 160 -~~~~i~~ISAk~g-~Gid~L~~~L~~~l 186 (311)
...+++.-||+.. +|-....+.+.+.+
T Consensus 165 G~~~Pi~~Gsal~al~~~~~~~~~~~~l~ 193 (394)
T TIGR00485 165 GDDVPIVRGSALKALEGDAEWEEKILELM 193 (394)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 86522561145654200367999999999
No 364
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=97.81 E-value=0.00035 Score=46.93 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=41.3
Q ss_pred HCCCCCEEEEEECCCHH---H-----HHHHHHHHHHHH----CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 42872025787211010---4-----345788886410----0123343110001387426789999983662
Q gi|254780941|r 128 KRSSRLILILNKIDCVK---P-----ERLLEQAEIANK----LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 128 ~~~~p~IiVlNKiDlv~---~-----~~l~~~~~~~~~----~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
+.+.|+++|++|+|.+. + ++.+..+..+-+ .++ +..|++|++...|++-|.+||...+.-
T Consensus 213 NLGiPIvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR~fCLqyG-AALiYTSvKe~kN~dlLykYl~HRiYg 284 (490)
T pfam05783 213 NLGIPVVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIRRFCLQYG-AALIYTSVKEEKNLDLLYKYLVHKIYG 284 (490)
T ss_pred CCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 479877999946418888765126206778999999999998619-657885235450189999999988618
No 365
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=1.7e-05 Score=55.51 Aligned_cols=117 Identities=17% Similarity=0.296 Sum_probs=62.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH------CCCEEEEC-C--CCCC-----EEEEEEE-----EEE----------E---CCE
Q ss_conf 189983389986889999986------89202105-8--8886-----0212789-----997----------3---994
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFV------GAKVSIVT-H--KVQT-----TRSIVRG-----IVS----------E---KES 70 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~------g~~vsivS-~--k~~T-----Tr~~i~g-----i~~----------~---~~~ 70 (311)
-.||+||+++|||+|-+-.|. +.+|+.++ + +.+. |--.|.| +.+ . .++
T Consensus 242 q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 17999899998889999999999861698089998066347699999999998499439968889999999987633688
Q ss_pred EEEEEECCCCHHHCCCCCCCCCCHHHHHHH--HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 899998798401012357532100234555--532100110000100000001223454428720257872110104
Q gi|254780941|r 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIK--HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 71 qiifvDTPG~~~~~~~l~~~~~~~~~~~l~--~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
.++||||+|-. +++ ..........+. ..|-+++|+.|+... .+..+++..+...+ +-=++++|.|-...
T Consensus 322 DLILIDTAGRS-~RD---~~~I~EL~~~l~~~~p~ev~LVLSATTK~-~DL~eIi~rF~~l~-idglIfTKLDET~S 392 (436)
T PRK11889 322 DYILIDTAGKN-YRA---SETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDETAS 392 (436)
T ss_pred CEEEEECCCCC-CCC---HHHHHHHHHHHHHCCCCEEEEEEECCCCH-HHHHHHHHHHCCCC-CCEEEEEECCCCCC
T ss_conf 88999298988-468---99999999998512777169999788998-99999999725799-88289971325687
No 366
>KOG2484 consensus
Probab=97.79 E-value=2.2e-05 Score=54.75 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 100234555532100110000100000001223454--428720257872110104345788886410012334311000
Q gi|254780941|r 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 (311)
Q Consensus 92 ~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISA 169 (311)
.+.....++-+|+||.|+||.++.+..-.+.-+.+. .-++..|+||||+|++.++.+.++...+...++ .+.+.++
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p--tv~fkas 214 (435)
T KOG2484 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP--TVAFKAS 214 (435)
T ss_pred HHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHCC--CCEEECC
T ss_conf 99999998651057886305588777775699999745687249999502104888899999999985588--6316615
Q ss_pred CCCCC
Q ss_conf 13874
Q gi|254780941|r 170 TKGHG 174 (311)
Q Consensus 170 k~g~G 174 (311)
..+.+
T Consensus 215 t~~~~ 219 (435)
T KOG2484 215 TQMQN 219 (435)
T ss_pred CCCCC
T ss_conf 30002
No 367
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.78 E-value=4e-05 Score=53.04 Aligned_cols=169 Identities=19% Similarity=0.270 Sum_probs=103.9
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CC--------CCEEEEE--EEEEE----------
Q ss_conf 4368512189983389986889999986------892021058---88--------8602127--89997----------
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KV--------QTTRSIV--RGIVS---------- 66 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~--------~TTr~~i--~gi~~---------- 66 (311)
.|..=|+-.|-+||.-+|||+|=+-.|. |.|.|.|.. ++ |.||-+| .|+++
T Consensus 115 ~p~Kgk~~ViMfVGLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFRAGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~E 194 (453)
T TIGR01425 115 TPKKGKSSVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYLESDPVKIASE 194 (453)
T ss_pred ECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC
T ss_conf 11568821588862148871566878777763266432565177542324899987476448971201048987078002
Q ss_pred ------ECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ------39948999987984010123575321002345555321001100001000000012234544287202578721
Q gi|254780941|r 67 ------EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 (311)
Q Consensus 67 ------~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKi 140 (311)
.++..||+|||=|=|+....|.+.|.+.. +|+ .-|.++||.|++=+.-... -.+.++..-.===++++|.
T Consensus 195 Gv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~-~Ai-~Pd~iifVMDGsIGQAA~~--QAkAFK~~~~vGSvIiTKL 270 (453)
T TIGR01425 195 GVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVA-EAI-KPDSIIFVMDGSIGQAAFS--QAKAFKDSVEVGSVIITKL 270 (453)
T ss_pred CHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH-HCC-CCCCEEEEECCCHHHHHHH--HHHHHHHCCCCEEEEEECC
T ss_conf 01132212784799837987322588889987686-334-9983699806616678899--9998630035003887515
Q ss_pred CCHHHHH--HHHHH------------HHHHHCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCC
Q ss_conf 1010434--57888------------8641001233431100013874-26789999983662
Q gi|254780941|r 141 DCVKPER--LLEQA------------EIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPL 188 (311)
Q Consensus 141 Dlv~~~~--l~~~~------------~~~~~~~~~~~i~~ISAk~g~G-id~L~~~L~~~lpe 188 (311)
|--.+-. +-..+ |...++-.|+.-=+||-+=|.| |.-|.+.+.+..+.
T Consensus 271 DGHAkGGGALSAVAATKsPiiFIGTGEhv~d~E~F~~~~FvskLLGmGDl~GL~~~v~~l~~~ 333 (453)
T TIGR01425 271 DGHAKGGGALSAVAATKSPIIFIGTGEHVDDFEIFDAEPFVSKLLGMGDLKGLIDKVQDLKLD 333 (453)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCHH
T ss_conf 677676237889875359779813775027605789971477540202188999999751421
No 368
>KOG0459 consensus
Probab=97.77 E-value=4e-05 Score=53.02 Aligned_cols=158 Identities=20% Similarity=0.284 Sum_probs=87.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC------------------------EEEECCCCCCEEE------EEEEEEEECCEEE
Q ss_conf 189983389986889999986892------------------------0210588886021------2789997399489
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK------------------------VSIVTHKVQTTRS------IVRGIVSEKESQI 72 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~------------------------vsivS~k~~TTr~------~i~gi~~~~~~qi 72 (311)
-.+.++|.--+||||+-+.|+... +|-.-+..+-+|+ .-++....+...+
T Consensus 80 vn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~f 159 (501)
T KOG0459 80 VNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRF 159 (501)
T ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEE
T ss_conf 44899999964401268736789865437789999999876133322489997376012102650541257887134367
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC-------CHHHHHHHHHHCC-CCCEEEEEECCCHH
Q ss_conf 999879840101235753210023455553210011000010000-------0001223454428-72025787211010
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-------NIHDLLKEIAKRS-SRLILILNKIDCVK 144 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~-------~~~~il~~l~~~~-~p~IiVlNKiDlv~ 144 (311)
.+.|+|| ++.+..........||+.++|+.|..+..+ +..+.....+..+ +..|+++||+|--.
T Consensus 160 tiLDApG--------Hk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459 160 TILDAPG--------HKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred EEECCCC--------CCCCCHHHCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 7631676--------55556000366111123320113200112103103663057899988623325799999505886
Q ss_pred HH----HHHH---HHH-HHH--HCCCC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 43----4578---888-641--00123--343110001387426789999983662235689
Q gi|254780941|r 145 PE----RLLE---QAE-IAN--KLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 (311)
Q Consensus 145 ~~----~l~~---~~~-~~~--~~~~~--~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~ 194 (311)
-+ +-.+ ... .+. .+.++ ...+|+|+.+|.++++..+ ...||++-
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~------s~cpwy~g 287 (501)
T KOG0459 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD------SVCPWYKG 287 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCC------CCCCCCCC
T ss_conf 673056689999999999998444689984142024645555534466------65884217
No 369
>KOG0083 consensus
Probab=97.76 E-value=7.8e-06 Score=57.62 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=90.3
Q ss_pred EECCCCCCHHHHHHHH------HCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf 8338998688999998------689202105888860212789997399--48999987984010123575321002345
Q gi|254780941|r 27 LVGATNAGKSTLVNRF------VGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l------~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~ 98 (311)
++|-+.+||+-|+=+. .|.-+|-|.- --|+. +++.++ ..+-+.||+|- +++...+.+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgi---d~rnk---li~~~~~kvklqiwdtagq--------erfrsvt~ay 67 (192)
T KOG0083 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGI---DFRNK---LIDMDDKKVKLQIWDTAGQ--------ERFRSVTHAY 67 (192)
T ss_pred CCCCCCCCCEEEEEEECCCCEECCCEEEEEEE---CCCCC---EECCCCCEEEEEEEECCCH--------HHHHHHHHHH
T ss_conf 34567668568999951674003761133200---12130---4513883899998523145--------7775544766
Q ss_pred HHHHHHHCCCCHHHHHHH-CCHHHHHHHH---HHCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 555321001100001000-0000122345---4428720257872110104345-7888864100123343110001387
Q gi|254780941|r 99 IKHADIVCLVVDSHRELK-VNIHDLLKEI---AKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~~-~~~~~il~~l---~~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
..++|.++++.|.....+ +.....+.++ .+....+.++-||+|+.....+ ...-+.+.+.++. +....||++|.
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~ 146 (192)
T KOG0083 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGF 146 (192)
T ss_pred HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHCC-CCEECCCCCCC
T ss_conf 31656255433211301077899999999999886676754425355412304565317889998799-71640330264
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 42678999998366223568964
Q gi|254780941|r 174 GCDDVLNYLCSTLPLAPWVYSAD 196 (311)
Q Consensus 174 Gid~L~~~L~~~lpe~~~~y~~~ 196 (311)
|+|--.-.|.+.|.....-+|++
T Consensus 147 nvd~af~~ia~~l~k~~~~~~~~ 169 (192)
T KOG0083 147 NVDLAFLAIAEELKKLKMGAPPE 169 (192)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 37689999999999731489999
No 370
>KOG0464 consensus
Probab=97.76 E-value=0.00026 Score=47.77 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=79.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH---CCCEEEE-CCCCCCE-------EEE----EEEEEE--ECCEEEEEEECCCCHH
Q ss_conf 512189983389986889999986---8920210-5888860-------212----789997--3994899998798401
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFV---GAKVSIV-THKVQTT-------RSI----VRGIVS--EKESQIVFLDTPGIFN 82 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~---g~~vsiv-S~k~~TT-------r~~----i~gi~~--~~~~qiifvDTPG~~~ 82 (311)
.|--.|+|+..-.|||+|-.-+++ |.--|+- -++-.|. |.+ ..+.++ .+++.+.++||||..+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred HHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCCCE
T ss_conf 66411306998517874067889977402210465678853778888888648366540442123561676524888403
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 01235753210023455553210011000010000000122345442872025787211010
Q gi|254780941|r 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 83 ~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
-+ -.+.+.+.-.|.++.|+|++-+...+...+..+..+.+.|-+..+||+|+.-
T Consensus 115 f~--------leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~ 168 (753)
T KOG0464 115 FR--------LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EE--------EEHHHHHHHHCCEEEEEECCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHH
T ss_conf 79--------8789888775073899845677664122100030135784533023466655
No 371
>TIGR00490 aEF-2 translation elongation factor aEF-2; InterPro: IPR004543 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position , . This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents archaeal EF2 proteins (also known as aEF2), which are more similar to eukaryotic EF2 than to bacterial EF2 (or EFG), both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=97.75 E-value=9.4e-05 Score=50.61 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=98.3
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH-CCC-EE---------EEC----CCCCCEEEE--EEEEEE--ECCEEEEEEE
Q ss_conf 4368512189983389986889999986-892-02---------105----888860212--789997--3994899998
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFV-GAK-VS---------IVT----HKVQTTRSI--VRGIVS--EKESQIVFLD 76 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~-g~~-vs---------ivS----~k~~TTr~~--i~gi~~--~~~~qiifvD 76 (311)
|.....--.|+|+..-..||+||-..|+ |.- +| .-- ..-+-|-+. +.-+.+ -.+|-+.++|
T Consensus 13 m~~~~~irniGi~ahidhGkttlsdnllaGaGmis~elaG~q~~ldfde~e~~rGiti~aanvsmvh~yeG~~ylinlid 92 (724)
T TIGR00490 13 MYKPEFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGEQLYLDFDEQEQERGITIDAANVSMVHEYEGNEYLINLID 92 (724)
T ss_pred HHHHHHHHHEEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEC
T ss_conf 63012221000378631775112234442133234540564100024413523772676411567653147502433314
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH----------
Q ss_conf 7984010123575321002345555321001100001000000012234544287202578721101043----------
Q gi|254780941|r 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE---------- 146 (311)
Q Consensus 77 TPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~---------- 146 (311)
|||..+. -..+-+++..+|.++.|+++-++..++...++.+..+.+..-++.+||+|.+-++
T Consensus 93 tPGhvdf--------GGdvtramra~dG~~vvv~aveG~mPqtetvlrqal~e~v~Pvlf~nkvdrli~el~l~~~~lq~ 164 (724)
T TIGR00490 93 TPGHVDF--------GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPEELQE 164 (724)
T ss_pred CCCCCCC--------CCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHH
T ss_conf 8862105--------62488887764763899950256576157899999873187067723478888862468889999
Q ss_pred HHHHHHHHHH----------------------------HCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4578888641----------------------------00123343110001387426789999983
Q gi|254780941|r 147 RLLEQAEIAN----------------------------KLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 147 ~l~~~~~~~~----------------------------~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
++.+.+...+ .+.+|.--+|..-++|.+..++.+++.+-
T Consensus 165 r~~k~i~~~n~li~~m~P~~~~~~W~~~v~~Gs~afGsa~~nWa~~vP~~~~~Gi~f~~~~~~~~e~ 231 (724)
T TIGR00490 165 RLIKIIAEVNKLIKKMAPEEFKDKWKVRVEDGSVAFGSAYYNWAISVPIMKKTGITFKDIYKYIKED 231 (724)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCEEEECCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 9999999999999741761000000476515641011222100020443001377599999986301
No 372
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.75 E-value=3.3e-05 Score=53.59 Aligned_cols=56 Identities=34% Similarity=0.496 Sum_probs=40.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---EEEECCC----CCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 89983389986889999986892---0210588----88602127899973994899998798401
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK---VSIVTHK----VQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~---vsivS~k----~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
.++++|.++||||||+|+|+|.. ...||.+ -|||+.+-+-.+..+. .++||||+.+
T Consensus 196 T~vl~G~SGVGKSTLiN~L~g~~~~~t~~is~~~~kGRHTTt~reL~~lp~Gg---~lIDTPG~Re 258 (353)
T PRK01889 196 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG---LLIDTPGMRE 258 (353)
T ss_pred EEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCEECCCEEEEEECCCCC---EEEECCCCCC
T ss_conf 89997788866999998756534534415000369950012406899948995---8973798654
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=1.1e-05 Score=56.69 Aligned_cols=119 Identities=23% Similarity=0.391 Sum_probs=66.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH-------C-CCEEEEC-CC--CC-----CEEEEEEEEE---------------EECC
Q ss_conf 12189983389986889999986-------8-9202105-88--88-----6021278999---------------7399
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFV-------G-AKVSIVT-HK--VQ-----TTRSIVRGIV---------------SEKE 69 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~-------g-~~vsivS-~k--~~-----TTr~~i~gi~---------------~~~~ 69 (311)
+-|.+|+||+++|||+|-+-.|. | .+|+.+| +. .+ -|--+|+|+- ...+
T Consensus 347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~ 426 (557)
T PRK12727 347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 426 (557)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCC
T ss_conf 07647874377767311799999999997399818999726640879999999999839757982899999999998369
Q ss_pred EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 489999879840101235753210023455553210011000010000000122345442872025787211010
Q gi|254780941|r 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 70 ~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
..+|||||+|.......+.+.+ + .+.+...+.- ++|+.++... ....+++..+...+ +-=+|++|+|-..
T Consensus 427 ~~lvliDTaG~~~rd~~~~~~~-~-~l~~~~~~~~-~Lvl~a~~~~-~~l~~~~~~~~~~~-~~~~i~TKlDE~~ 496 (557)
T PRK12727 427 YKLVLIDTAGMGQRDRALAAQL-N-WLRAARQVTS-LLVLPANAHF-SDLDEVVRRFAHAK-PQGVVLTKLDETG 496 (557)
T ss_pred CCEEEEECCCCCCCCHHHHHHH-H-HHHCCCCCCE-EEEEECCCCH-HHHHHHHHHHCCCC-CCEEEEEECCCCC
T ss_conf 9989994999884699999999-9-8751477635-9999688998-99999999853799-8748996143678
No 374
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.69 E-value=0.00018 Score=48.83 Aligned_cols=62 Identities=32% Similarity=0.350 Sum_probs=40.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-EEEECCCC-CCEEEEEEEEE---EECCEEEEEEECCCCHHH
Q ss_conf 2189983389986889999986892-02105888-86021278999---739948999987984010
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAK-VSIVTHKV-QTTRSIVRGIV---SEKESQIVFLDTPGIFNA 83 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~-~TTr~~i~gi~---~~~~~qiifvDTPG~~~~ 83 (311)
-..|+|+|+...|||+|+|.|+|.. --.|++.. +||+-...... ...+..++++||=|+...
T Consensus 7 v~vvsv~G~~rtGKS~LlN~l~~~~~~F~~~~~~~~~T~Giw~~~~p~~~~~~~~~~llDtEG~~~~ 73 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCC
T ss_conf 7999987689898899999994888898747887765650699835635788733899834777761
No 375
>KOG0081 consensus
Probab=97.68 E-value=3.7e-05 Score=53.24 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=82.5
Q ss_pred EECCCCCCHHHHHHHHHCCC-----EEEECCCCCCEEEEEEEEEEE------CCEE---EEEEECCCCHHHCCCCCCCCC
Q ss_conf 83389986889999986892-----021058888602127899973------9948---999987984010123575321
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAK-----VSIVTHKVQTTRSIVRGIVSE------KESQ---IVFLDTPGIFNAKDSYHKLMI 92 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~-----vsivS~k~~TTr~~i~gi~~~------~~~q---iifvDTPG~~~~~~~l~~~~~ 92 (311)
.+|-++|||+|++-.-+.-+ ++-|.-- -|. -+-+++. +..| +-+.||+|-- ++.
T Consensus 14 aLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGID---Fre-KrvvY~s~gp~g~gr~~rihLQlWDTAGQE--------RFR 81 (219)
T KOG0081 14 ALGDSGVGKTSFLYQYTDGKFNTQFISTVGID---FRE-KRVVYNSSGPGGGGRGQRIHLQLWDTAGQE--------RFR 81 (219)
T ss_pred HHCCCCCCCEEEEEEECCCCCCCEEEEEEECC---CCC-CEEEEECCCCCCCCCCEEEEEEEECCCCHH--------HHH
T ss_conf 40467777347898732785334357774013---440-047883468998875228987520010478--------888
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHH-CCHHHHHHHHHH----CCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCC
Q ss_conf 002345555321001100001000-000012234544----28720257872110104345-788886410012334311
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAK----RSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~-~~~~~il~~l~~----~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ 166 (311)
..+-.-..+|=..++++|.+.... -.....+.+++. .+..++++-||+|+.+...+ ..++..+...++. +.|.
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl-PYfE 160 (219)
T KOG0081 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL-PYFE 160 (219)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 889999985011158886253377887998999987740137999899867123166655239999999997399-8266
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 00013874267899999836
Q gi|254780941|r 167 VSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 167 ISAk~g~Gid~L~~~L~~~l 186 (311)
.||-+|.|+++-.+.|....
T Consensus 161 TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081 161 TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 02455768999999999999
No 376
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.68 E-value=4.8e-05 Score=52.53 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=42.6
Q ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 21001100001000000012234544--2872025787211010434578888641001
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLV 159 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~ 159 (311)
|+|+.|+||..+.......+.+.+.. .++|.|+|+||+|+++++....+.+.+.+..
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~~~~~~~W~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCCHHHHHHHHHHHHHCC
T ss_conf 98999997037867688749999986069984899985232189899999999998419
No 377
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=2.8e-05 Score=54.03 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=64.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHH------CCCEEEEC---CCCCCE-----E-----EEEEEEE-------------EECC
Q ss_conf 2189983389986889999986------89202105---888860-----2-----1278999-------------7399
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFV------GAKVSIVT---HKVQTT-----R-----SIVRGIV-------------SEKE 69 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~------g~~vsivS---~k~~TT-----r-----~~i~gi~-------------~~~~ 69 (311)
.-.|.++|+++|||+|-+-.|. |.+++.++ .+|+.. . -++.+.. ....
T Consensus 75 ~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCC
T ss_conf 81899988898988999999999998679908999838888889999999999819953545887899999999999769
Q ss_pred EEEEEEECCCCHHHCCCCCCCCCCHHHHHH--HHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 489999879840101235753210023455--55321001100001000000012234544287202578721101043
Q gi|254780941|r 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTI--KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 (311)
Q Consensus 70 ~qiifvDTPG~~~~~~~l~~~~~~~~~~~l--~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~ 146 (311)
+.++++||+|-+. .+..+........ ...|.+++|+|++-... ...+....+...+ .-=++++|.|--.+-
T Consensus 155 ~DvilIDTAGR~~----~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~-~~~~~~~~f~~~~-i~gvIlTKlD~ta~g 227 (270)
T PRK06731 155 VDYILIDTAGKNY----RASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCC----CCHHHHHHHHHHHCCCCCCEEEEEEECCCCHH-HHHHHHHHHCCCC-CCEEEEECCCCCCCC
T ss_conf 9999997999871----46999999999860638987999986877769-9999999807799-988999653589977
No 378
>KOG0393 consensus
Probab=97.67 E-value=9.7e-05 Score=50.53 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=91.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CE--EEEEEECCCCHHHCCCCCCCCCCHHHH
Q ss_conf 121899833899868899999868920210588886021278999739-94--899998798401012357532100234
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ES--QIVFLDTPGIFNAKDSYHKLMIRLSWS 97 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~--qiifvDTPG~~~~~~~l~~~~~~~~~~ 97 (311)
++--..|||-..+||+.|+-..+... -+....| |--++-...++.+ +. .+-+.||.|-.+ .++ + + .+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvP-TVFdnys~~v~V~dg~~v~L~LwDTAGqed----YDr-l-R-pl- 72 (198)
T KOG0393 3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVP-TVFDNYSANVTVDDGKPVELGLWDTAGQED----YDR-L-R-PL- 72 (198)
T ss_pred EEEEEEEECCCCCCCEEEEEEECCCC-CCCCCCC-EEECCCEEEEEECCCCEEEEEEEECCCCCC----CCC-C-C-CC-
T ss_conf 03699998988767458898843576-8665456-387562389996489789986331479730----113-3-6-36-
Q ss_pred HHHHHHHHCCCCHHHHHHHCC--HHHHHHHHHH--CCCCCEEEEEECCCHHHHHHH-------------HHHHHHHHCCC
Q ss_conf 555532100110000100000--0012234544--287202578721101043457-------------88886410012
Q gi|254780941|r 98 TIKHADIVCLVVDSHRELKVN--IHDLLKEIAK--RSSRLILILNKIDCVKPERLL-------------EQAEIANKLVF 160 (311)
Q Consensus 98 ~l~~aDiil~VvDa~~~~~~~--~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~-------------~~~~~~~~~~~ 160 (311)
+..++|+++.+.+..++.+-. -...+.++.. .+.|+++|.+|.|+-++.... .+...+.+..+
T Consensus 73 sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig 152 (198)
T KOG0393 73 SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG 152 (198)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 77888889999876982668887751068899638999889982127765387889998746578656789999999859
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 33431100013874267899999836
Q gi|254780941|r 161 IEKTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 161 ~~~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
....+..||+++.|+.+..+.-....
T Consensus 153 a~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393 153 AVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred CCEEEEEHHHHHCCCHHHHHHHHHHH
T ss_conf 51123201756377188899999998
No 379
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.64 E-value=4.6e-05 Score=52.62 Aligned_cols=97 Identities=24% Similarity=0.204 Sum_probs=66.3
Q ss_pred EEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 99879840101235753210023455553210011000010000000122345442872025787211010434578888
Q gi|254780941|r 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAE 153 (311)
Q Consensus 74 fvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~ 153 (311)
+.+-||... ...+...+.++.+|+++.|+||..+.......+-..+. ++|.++|+||+|+++...+.+..+
T Consensus 14 i~~~~g~~~-------k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~ 84 (322)
T COG1161 14 IQWFPGHMK-------KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKK 84 (322)
T ss_pred CCCCCCCHH-------HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHC--CCCCEEEEEHHHCCCHHHHHHHHH
T ss_conf 255677519-------99999987536676589974312688888730678855--788359985132489999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 641001233431100013874267899
Q gi|254780941|r 154 IANKLVFIEKTFMVSATKGHGCDDVLN 180 (311)
Q Consensus 154 ~~~~~~~~~~i~~ISAk~g~Gid~L~~ 180 (311)
.+....+ ...+++|+..+.+...+..
T Consensus 85 ~~~~~~~-~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 85 YFKKEEG-IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHCCC-CCCEEEECCCCCCCCCCHH
T ss_conf 9986479-8655764334677654258
No 380
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.63 E-value=4.1e-05 Score=52.99 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=6.5
Q ss_pred HHHCCCEEEECCC
Q ss_conf 9868920210588
Q gi|254780941|r 41 RFVGAKVSIVTHK 53 (311)
Q Consensus 41 ~l~g~~vsivS~k 53 (311)
.=+|...-|+|.+
T Consensus 20 ~eLG~DAvILstr 32 (282)
T TIGR03499 20 EELGPDAVILSTR 32 (282)
T ss_pred HHHCCCEEEEECE
T ss_conf 9978994999693
No 381
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=97.61 E-value=0.00039 Score=46.61 Aligned_cols=150 Identities=21% Similarity=0.313 Sum_probs=82.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CEEEECCCCC-------------CEEEEEEEEEEE------------------
Q ss_conf 8998338998688999998689-----2021058888-------------602127899973------------------
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-----KVSIVTHKVQ-------------TTRSIVRGIVSE------------------ 67 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-----~vsivS~k~~-------------TTr~~i~gi~~~------------------ 67 (311)
.|++.|+-++||+.|+.+|+.. .++.+++-.- -+++++.|+-|-
T Consensus 3 ~iG~~GPvG~Gktal~e~l~~~~~~~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas~nl~a~ 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRELAKKYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDASLNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 66650477764689999999988740667787311001246888876412662226774158987300100021218899
Q ss_pred -------CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf -------9948999987984010123575321002345555321001100001000000012234544287202578721
Q gi|254780941|r 68 -------KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 (311)
Q Consensus 68 -------~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKi 140 (311)
.+.+++|+...| +.+...+ .=+-+|+.+||+|...+..- -..----+. +--++|+||+
T Consensus 83 ~~~~~rf~~~~~~~~esGG-----dnl~atf------~P~l~d~t~~vidva~G~ki-PrkGGPGit---~sdllvink~ 147 (199)
T TIGR00101 83 EELEARFPDLELVFIESGG-----DNLSATF------SPELADLTIFVIDVAEGDKI-PRKGGPGIT---RSDLLVINKI 147 (199)
T ss_pred HHHHHCCCCEEEEEEECCC-----CCCEEEC------CCCEEEEEEEEEEECCCCCC-CCCCCCCCC---CHHEEEEECC
T ss_conf 9886215640489983288-----6200002------76402367889972058745-677889853---0012243200
Q ss_pred CCHHHHH-HHHHHH-HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1010434-578888-64100123343110001387426789999983662
Q gi|254780941|r 141 DCVKPER-LLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 141 Dlv~~~~-l~~~~~-~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
|+..--. -+..++ ...+..+....++..-++..|++...+|+..+++.
T Consensus 148 dlaP~vGadl~~m~rd~~~mr~~~Pf~ftn~~~~~~l~~v~~~~~~~~~~ 197 (199)
T TIGR00101 148 DLAPFVGADLKVMERDAKKMRGEKPFIFTNLKKKEGLDDVIDFIEKYALL 197 (199)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCHHHHHHHHHHHHHC
T ss_conf 12531123035443567864069974664003320367999999875320
No 382
>KOG1249 consensus
Probab=97.61 E-value=1.9e-05 Score=55.17 Aligned_cols=25 Identities=48% Similarity=0.611 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEE
Q ss_conf 8998338998688999998689202
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVS 48 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vs 48 (311)
-+-++|.+||||||++|+|+....+
T Consensus 215 df~lvg~tnvgks~~fn~ll~sD~c 239 (572)
T KOG1249 215 DFYLVGATNVGKSTLFNALLESDLC 239 (572)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 6443210002403678887641124
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00081 Score=44.57 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=82.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC------CCEE-EECCCC--CC--EEEEEEEEEEECCEEEEEEECCCCHHHCC-----CC
Q ss_conf 899833899868899999868------9202-105888--86--02127899973994899998798401012-----35
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVG------AKVS-IVTHKV--QT--TRSIVRGIVSEKESQIVFLDTPGIFNAKD-----SY 87 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g------~~vs-ivS~k~--~T--Tr~~i~gi~~~~~~qiifvDTPG~~~~~~-----~l 87 (311)
.|.|.|+|+||||||+-.+.. .++. +.++.. +- |-..|..+.+.+..++..++.-+.--.++ .+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHH
T ss_conf 99986799845899999999999855966513983114208827515999814795579888478876210478627888
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHH---HHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7532100234555532100110000---1000000012234544287202578721101043457888864100123343
Q gi|254780941|r 88 HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT 164 (311)
Q Consensus 88 ~~~~~~~~~~~l~~aDiil~VvDa~---~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i 164 (311)
.+.+..+...++++||++ ++|-- +-......+.++++.+.++|+|.++-+-+. . +..+.+...... -+
T Consensus 87 e~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr---~---P~v~~ik~~~~v-~v 157 (179)
T COG1618 87 EEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR---H---PLVQRIKKLGGV-YV 157 (179)
T ss_pred HHHHHHHHHHHHHCCCEE--EEECCCCHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC---C---HHHHHHHHCCCE-EE
T ss_conf 998689999886349989--99433633020088999999996589937999962567---7---589986424877-99
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 110001387426789999983662
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTLPL 188 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~lpe 188 (311)
| .+-.|-+.+...+...|..
T Consensus 158 ~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 158 F----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred E----ECCCHHHHHHHHHHHHHCC
T ss_conf 9----7512156799999998524
No 384
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.57 E-value=4.3e-05 Score=52.83 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=36.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCC
Q ss_conf 89983389986889999986892021058888602127899973994899998798
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG 79 (311)
.++|+|+++|||+||+++|+...-...-..++|||.+-.|-....+ ..|++..=
T Consensus 3 livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~d--Y~Fvs~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVD--YFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC--EEEECHHH
T ss_conf 9999899988999999999976899448870446897998778873--47850899
No 385
>KOG2203 consensus
Probab=97.57 E-value=5.8e-05 Score=52.00 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=53.4
Q ss_pred CCE----EEEEECCCCCCHHHHHHHHHCCCEEEE--C-CCCCCEEEEEEEEEEECCEEEEEEECCCCHHHC-CCCCCCCC
Q ss_conf 121----899833899868899999868920210--5-888860212789997399489999879840101-23575321
Q gi|254780941|r 21 RSG----CVALVGATNAGKSTLVNRFVGAKVSIV--T-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-DSYHKLMI 92 (311)
Q Consensus 21 ksg----~VaivG~pN~GKSTL~N~l~g~~vsiv--S-~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~-~~l~~~~~ 92 (311)
-|| .||++|+..+|||||+|.|.|..-.-. + .+.|||.-.-.+-...-+.-++..|.-|--... ..-...-.
T Consensus 32 d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGEDqdFEr 111 (772)
T KOG2203 32 DCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGEDQDFER 111 (772)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf 46765368888657665667899988666768777663300112022577625999716999645687532365510777
Q ss_pred CHHHHHHHHHHHHCC
Q ss_conf 002345555321001
Q gi|254780941|r 93 RLSWSTIKHADIVCL 107 (311)
Q Consensus 93 ~~~~~~l~~aDiil~ 107 (311)
+.|.-++.-+|+++.
T Consensus 112 ksALFaiavSevviv 126 (772)
T KOG2203 112 KSALFAIAVSEVVIV 126 (772)
T ss_pred HHHHHHHHHHHEEHH
T ss_conf 767988754130000
No 386
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.50 E-value=0.00023 Score=48.08 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=58.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC----CEEEECCC--------------CCCEEEEEEE-EEEE------------------
Q ss_conf 998338998688999998689----20210588--------------8860212789-9973------------------
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGA----KVSIVTHK--------------VQTTRSIVRG-IVSE------------------ 67 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~----~vsivS~k--------------~~TTr~~i~g-i~~~------------------ 67 (311)
..|-|.-+|||+||+|+++.+ ++++.-+- ......-..| +...
T Consensus 3 ~iitGFLGaGKTTll~~lL~~~~~~~~avIvNEfG~~~ID~~ll~~~~~~v~el~~GCiCCs~~~dl~~~l~~l~~~~~~ 82 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLDA 82 (158)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 89984888999999999984788997799970765546316676378824999338714652251589999999997651
Q ss_pred --CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC--HHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf --994899998798401012357532100234555532100110000100000--001223454428720257872110
Q gi|254780941|r 68 --KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILNKIDC 142 (311)
Q Consensus 68 --~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~--~~~il~~l~~~~~p~IiVlNKiDl 142 (311)
.....+++-|-|+..+...+...+....+...-..+.++-|||+....... .....+++...+ ++++||+|+
T Consensus 83 ~~~~~d~iiIE~SGla~P~~i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD---~ivlnK~DL 158 (158)
T cd03112 83 GKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTDL 158 (158)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHCCHHHHCEEECCCEEEEECHHHHHHHHHCCHHHHHHHHHCC---EEEEECCCC
T ss_conf 5788788999636878828999988607143210743876999818987764324469999999689---999966779
No 387
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=97.47 E-value=6.9e-05 Score=51.51 Aligned_cols=43 Identities=28% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
.|||+|+++||||||+|-+.|-- . +..|.++.+|...+ -||=+
T Consensus 26 ~VAi~GpSGAGKSTLLnLiAGF~-~-----------PasG~i~~nd~~~t--~~aPy 68 (213)
T TIGR01277 26 RVAILGPSGAGKSTLLNLIAGFL-E-----------PASGEIKVNDKDHT--RLAPY 68 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-C-----------CCCEEEEECCCCCC--CCCCC
T ss_conf 68887589862788987786404-7-----------76405887780122--68887
No 388
>pfam07650 KH_2 KH domain.
Probab=97.45 E-value=0.00016 Score=49.07 Aligned_cols=53 Identities=32% Similarity=0.448 Sum_probs=39.5
Q ss_pred EEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHC
Q ss_conf 999982798415487466588999999999999998489813789988458834597999852
Q gi|254780941|r 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQR 308 (311)
Q Consensus 246 ~~I~v~k~sqk~IiiGk~G~~ik~I~~~ar~~le~~~~~~V~L~l~Vkv~k~W~~~~~~l~~~ 308 (311)
+.+++.+.||++|+||++|+.|++++..++ +.|+.+|+++..- .++|.+..++
T Consensus 1 ~v~v~i~~srpGiiIGk~G~~I~~l~~~l~----k~~~~~~~i~v~e------v~~p~~~a~l 53 (55)
T pfam07650 1 AVIVVIRTSQPGIVIGKGGSNIKKLGKELR----KRFGKKVQIEVLE------VKNPELLAQL 53 (55)
T ss_pred CEEEEEEECCCCEEECCCCCCHHHHHHHHH----HHHCCCCEEEEEE------ECCCCCCCEE
T ss_conf 989999918996799989603999999999----9879995899999------5388825297
No 389
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00011 Score=50.09 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=77.3
Q ss_pred EEEECCCCCCHHHHHHHHHC-CCEEEECCCCCC----EEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 99833899868899999868-920210588886----0212789997399489999879840101235753210023455
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVG-AKVSIVTHKVQT----TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g-~~vsivS~k~~T----Tr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
=.|||+|++||+|++..--- -.++......++ ||+-- -.-..+-+++||.|=+...+. .....+..|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd----wwf~deaVlIDtaGry~~q~s-~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD----WWFTDEAVLIDTAGRYITQDS-ADEVDRAEWLGF 202 (1188)
T ss_pred EEEECCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC----CCCCCCEEEECCCCCEECCCC-CCHHHHHHHHHH
T ss_conf 588548889840087515536661555331222688873357----542553489858752443667-502348889998
Q ss_pred ----------HHHHHHCCCCHHHHHHHCCHHHH---H-------HHHH---HCCCCCEEEEEECCCHHHH-HHHHHHHHH
Q ss_conf ----------55321001100001000000012---2-------3454---4287202578721101043-457888864
Q gi|254780941|r 100 ----------KHADIVCLVVDSHRELKVNIHDL---L-------KEIA---KRSSRLILILNKIDCVKPE-RLLEQAEIA 155 (311)
Q Consensus 100 ----------~~aDiil~VvDa~~~~~~~~~~i---l-------~~l~---~~~~p~IiVlNKiDlv~~~-~l~~~~~~~ 155 (311)
.-.|.|++.+|+.+-.+....+. . .++. ....|+.+++||.|++.-= ......+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~ 282 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKE 282 (1188)
T ss_pred HHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCHH
T ss_conf 88999735578886379997899973899999999999999999999984156776389986210021579987333798
Q ss_pred HHCCCCCCCCCCCCCCCCC--------HHHHHHHHHHHCCC
Q ss_conf 1001233431100013874--------26789999983662
Q gi|254780941|r 156 NKLVFIEKTFMVSATKGHG--------CDDVLNYLCSTLPL 188 (311)
Q Consensus 156 ~~~~~~~~i~~ISAk~g~G--------id~L~~~L~~~lpe 188 (311)
...-.+.-.|+..+....+ .+.|.+.+...+++
T Consensus 283 ~r~qvwG~tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~ 323 (1188)
T COG3523 283 EREQVWGVTFPLDARRNANLAAELEQEFRLLLDRLNAQLVE 323 (1188)
T ss_pred HHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87400100125666666455888999999999999887789
No 390
>KOG1673 consensus
Probab=97.43 E-value=0.00035 Score=46.96 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=102.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEE-EEEEECCEE--EEEEECCCCHHHCCCCCCCCCCHH
Q ss_conf 85121899833899868899999868920210588886021278-999739948--999987984010123575321002
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQ--IVFLDTPGIFNAKDSYHKLMIRLS 95 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~-gi~~~~~~q--iifvDTPG~~~~~~~l~~~~~~~~ 95 (311)
|.-|..|+++|-+..||+||+-.-+|..-- -...||+--+.. -.+...+.. +.+.|..|-.+..+.+.
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~d--e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP------- 87 (205)
T KOG1673 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYD--EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP------- 87 (205)
T ss_pred CCEEEEEEEECCCCCCCEEEEHHHHCCHHH--HHHHHHHCCCCEEEEEEECCEEEEEEEEECCCCHHHHCCCC-------
T ss_conf 506899985136545835430445413127--88888747400210788624089999874377475540476-------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCC-HHHHHHHHHHCCCC--CEEEEEECCCHH------HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 34555532100110000100000-00122345442872--025787211010------4345788886410012334311
Q gi|254780941|r 96 WSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSR--LILILNKIDCVK------PERLLEQAEIANKLVFIEKTFM 166 (311)
Q Consensus 96 ~~~l~~aDiil~VvDa~~~~~~~-~~~il~~l~~~~~p--~IiVlNKiDlv~------~~~l~~~~~~~~~~~~~~~i~~ 166 (311)
-+-.++-+|+|++|.++..+-. ..+...+.+..++- -|+|-+|-|..- ++.+..++..+.+..+ ...|.
T Consensus 88 -iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F 165 (205)
T KOG1673 88 -IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFF 165 (205)
T ss_pred -EEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCEEE
T ss_conf -5444737999998447667788899999987425775313885243576624898898999999999999737-83798
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 000138742678999998366223568964
Q gi|254780941|r 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 (311)
Q Consensus 167 ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~ 196 (311)
.|+.++.|+..+...+...+-.-||--|+.
T Consensus 166 ~Sts~sINv~KIFK~vlAklFnL~~ti~~~ 195 (205)
T KOG1673 166 CSTSHSINVQKIFKIVLAKLFNLPWTIPEI 195 (205)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCEECCCC
T ss_conf 613652029999999999981886013220
No 391
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.41 E-value=0.0014 Score=42.99 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=67.5
Q ss_pred EEEE-CCCCCCHHHHHHHH--HCCCEEEECCCCC-------------CEEEEEEE-------------------------
Q ss_conf 9983-38998688999998--6892021058888-------------60212789-------------------------
Q gi|254780941|r 25 VALV-GATNAGKSTLVNRF--VGAKVSIVTHKVQ-------------TTRSIVRG------------------------- 63 (311)
Q Consensus 25 Vaiv-G~pN~GKSTL~N~l--~g~~vsivS~k~~-------------TTr~~i~g------------------------- 63 (311)
||++ |+-+|||||+-=.| .+.++.++--=+| -+.....+
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALLKNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVTEVR 81 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCCCHHHHHHHHH
T ss_conf 89995899860999999999974287199941899857777187656321223046533515066532351768899999
Q ss_pred -----EEEECCEEEEEEECC-CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf -----997399489999879-84010123575321002345555321001100001000000012234544287202578
Q gi|254780941|r 64 -----IVSEKESQIVFLDTP-GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 (311)
Q Consensus 64 -----i~~~~~~qiifvDTP-G~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVl 137 (311)
....+++.++++||| |+. ..+..++..+|.++.|+..+...-.+....++.+++.+.|+-+|+
T Consensus 82 ~~~~~~~~~~~~D~viiD~Ppg~~-----------~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~ 150 (179)
T cd03110 82 KHAKEIAKAEGAELIIIDGPPGIG-----------CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVI 150 (179)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCC-----------HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999998644379989981899975-----------789999973994999819947899999999999998299789999
Q ss_pred EECCCHH
Q ss_conf 7211010
Q gi|254780941|r 138 NKIDCVK 144 (311)
Q Consensus 138 NKiDlv~ 144 (311)
|+.|.-.
T Consensus 151 Nr~~~~~ 157 (179)
T cd03110 151 NKYDLND 157 (179)
T ss_pred ECCCCCC
T ss_conf 6887887
No 392
>KOG3905 consensus
Probab=97.36 E-value=0.00086 Score=44.40 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=39.9
Q ss_pred CCCCCEEEEEECCCHHH--------HHHHHHHH-HHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 28720257872110104--------34578888-64100---12334311000138742678999998366
Q gi|254780941|r 129 RSSRLILILNKIDCVKP--------ERLLEQAE-IANKL---VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~~--------~~l~~~~~-~~~~~---~~~~~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
.+.|+++|.+|+|.+.- +..+..++ .+.++ ++ ...|+.|++...|++-|..||.....
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCCCEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 79747999953423667653010058889999999999998708-43688521335435799999888742
No 393
>KOG0780 consensus
Probab=97.35 E-value=0.0004 Score=46.55 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEEC---CCC--------CCE--EEEEEEEEE---------
Q ss_conf 24368512189983389986889999986------89202105---888--------860--212789997---------
Q gi|254780941|r 15 FVQDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIVT---HKV--------QTT--RSIVRGIVS--------- 66 (311)
Q Consensus 15 ~~~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsivS---~k~--------~TT--r~~i~gi~~--------- 66 (311)
..+..-|.-.|-+||.-++||+|.+-.+. |.+++.|. -++ +.| |-+..|.++
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~ 173 (483)
T KOG0780 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIAS 173 (483)
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHH
T ss_conf 66156897089998305788630089999999846872457760224530689999876740770684036655589999
Q ss_pred -------ECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf -------3994899998798401012357532100234555532100110000100000001223454428720257872
Q gi|254780941|r 67 -------EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 (311)
Q Consensus 67 -------~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNK 139 (311)
.+++.++++||.|=|.....+-+.|.+.. .++ .-|.++||.||+-+..... ....++..-.---++++|
T Consensus 174 egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~-~ai-~Pd~vi~VmDasiGQaae~--Qa~aFk~~vdvg~vIlTK 249 (483)
T KOG0780 174 EGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVS-KAI-KPDEIIFVMDASIGQAAEA--QARAFKETVDVGAVILTK 249 (483)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HHC-CCCEEEEEEECCCCHHHHH--HHHHHHHHHCCCEEEEEE
T ss_conf 999988863972899827873012489999999998-515-9873899985620076799--999887761540379972
Q ss_pred CCCHH
Q ss_conf 11010
Q gi|254780941|r 140 IDCVK 144 (311)
Q Consensus 140 iDlv~ 144 (311)
.|--.
T Consensus 250 lDGha 254 (483)
T KOG0780 250 LDGHA 254 (483)
T ss_pred CCCCC
T ss_conf 25677
No 394
>pfam05879 RHD3 Root hair defective 3 GTP-binding protein (RHD3). This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement. The family also contains the homologous yeast synthetic enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking.
Probab=97.35 E-value=0.00029 Score=47.45 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=51.4
Q ss_pred ECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEE---ECCEEEEEEECCCCHHHC-CCCCCCCCCHHHHHHHH
Q ss_conf 3389986889999986892021--05888860212789997---399489999879840101-23575321002345555
Q gi|254780941|r 28 VGATNAGKSTLVNRFVGAKVSI--VTHKVQTTRSIVRGIVS---EKESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 28 vG~pN~GKSTL~N~l~g~~vsi--vS~k~~TTr~~i~gi~~---~~~~qiifvDTPG~~~~~-~~l~~~~~~~~~~~l~~ 101 (311)
+|.-++|||||+|+|.|.+-.- .+.+.|||.-.-.+-.. .....++..|.-|--... ..=...-.+.+.=++.-
T Consensus 1 ~G~QSsGKSTLLN~LFgT~F~~md~~~r~QTTkGIW~a~~~~~~~~~~~~lvmDvEGtDgrERGEDq~FErksALFALA~ 80 (741)
T pfam05879 1 FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIGNMEPNILVMDVEGTDGRERGEDQDFERKSALFALAT 80 (741)
T ss_pred CCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCHHHEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99988758889888858996301124677644002100047877778986999778787310156522799999999996
Q ss_pred HHHHCC---CCHHHH
Q ss_conf 321001---100001
Q gi|254780941|r 102 ADIVCL---VVDSHR 113 (311)
Q Consensus 102 aDiil~---VvDa~~ 113 (311)
+|+++. ..|...
T Consensus 81 SdvLIVNmW~hdIG~ 95 (741)
T pfam05879 81 SEVLIVNMWEHQVGL 95 (741)
T ss_pred CCEEEEECCHHHHCC
T ss_conf 024567515365143
No 395
>KOG3886 consensus
Probab=97.33 E-value=9.2e-05 Score=50.68 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=70.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEE-EEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789-997399489999879840101235753210023455553
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~g-i~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
-|.++|++++||||+=-.+....++--...++.|-+...+ +...++--+-+.|-.|-- ..+...+...--..+..+
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcggqe---~fmen~~~~q~d~iF~nv 82 (295)
T KOG3886 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE---EFMENYLSSQEDNIFRNV 82 (295)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHEEEHHCCCCCH---HHHHHHHHHCCHHHHEEH
T ss_conf 38885047887434520566656566551668861166435444200100021367809---999988763200101002
Q ss_pred HHHCCCCHHHHHHHCCHHHH----HHHHHHC--CCCCEEEEEECCCHHHH
Q ss_conf 21001100001000000012----2345442--87202578721101043
Q gi|254780941|r 103 DIVCLVVDSHRELKVNIHDL----LKEIAKR--SSRLILILNKIDCVKPE 146 (311)
Q Consensus 103 Diil~VvDa~~~~~~~~~~i----l~~l~~~--~~p~IiVlNKiDlv~~~ 146 (311)
+++++|+|+....-+.|... ++.+.+. ..+++..+.|+|++..+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCC
T ss_conf 11466542121366664899999999998539742377787403000256
No 396
>KOG2423 consensus
Probab=97.33 E-value=0.00037 Score=46.74 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHC--CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 455553210011000010000000122345442--872025787211010434578888641001233431100013874
Q gi|254780941|r 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 97 ~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~--~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
..+..+|+++.|+||.++.+..-..+-+.+++. .+.+|+|+||+|++.--........+++.++. --|..|-.+..|
T Consensus 209 KViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPT-iAfHAsi~nsfG 287 (572)
T KOG2423 209 KVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPT-IAFHASINNSFG 287 (572)
T ss_pred HHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEHHHCCCCC
T ss_conf 7503220368852156876654178999986328752168885135500188899999997522762-454022237652
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
-..|+..|.+...
T Consensus 288 KgalI~llRQf~k 300 (572)
T KOG2423 288 KGALIQLLRQFAK 300 (572)
T ss_pred HHHHHHHHHHHHH
T ss_conf 1699999999986
No 397
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.31 E-value=0.00011 Score=50.11 Aligned_cols=55 Identities=25% Similarity=0.293 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 89983389986889999986892-0210588886021278999739948999987984
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
.|+|+|+++|||+||+++|+... -...-+.++|||.+-.|-. ++..+.|++..-|
T Consensus 9 livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~--dG~dY~Fvs~eeF 64 (208)
T PRK00300 9 LIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEV--DGVHYHFVSREEF 64 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCEEEEECHHHH
T ss_conf 8999999988999999999972998689989746889899877--8965799619999
No 398
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.30 E-value=0.00015 Score=49.40 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=36.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 9983389986889999986892-0210588886021278999739948999987984
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
++|+|+++|||+||++.|+... -.+....+.|||.+..|-. ++....|++.--|
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~--~G~dY~Fvs~~~F 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV--DGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC--CCCEEEEECHHHH
T ss_conf 999999988999999999851987768756603789988877--8967898679999
No 399
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.30 E-value=0.00043 Score=46.32 Aligned_cols=65 Identities=26% Similarity=0.423 Sum_probs=42.6
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEE------------E------EECCCC
Q ss_conf 5121-89983389986889999986892021058888602127899973994899------------9------987984
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------------F------LDTPGI 80 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qii------------f------vDTPG~ 80 (311)
-+.| .+||+||=++|||||..+|.|..-+.||+ |.++.++.-+. | .+-||+
T Consensus 23 v~~GE~HAiMGPNGsGKSTL~~~iaGhp~y~vt~----------G~I~f~G~Dll~l~~~ERAR~GlFLaFQ~P~EIPGV 92 (248)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPKYEVTS----------GTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (248)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEE----------EEEEECCEECCCCCHHHHHCCCCEECCCCCCCCCCC
T ss_conf 1685179986889984788877761799337842----------089877652001896556405651015888556885
Q ss_pred HHHCCCCCCCCCCHHHHHHH
Q ss_conf 01012357532100234555
Q gi|254780941|r 81 FNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~l~ 100 (311)
. +..+.+.|..|..
T Consensus 93 ~------~~~FlR~A~NA~R 106 (248)
T TIGR01978 93 S------NLEFLRSALNARR 106 (248)
T ss_pred C------HHHHHHHHHHHHH
T ss_conf 7------7889999999999
No 400
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=97.27 E-value=0.00094 Score=44.16 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCC-EEEEEECCCHHHH
Q ss_conf 994899998798401012357532100234555532100110000100000001223454428720-2578721101043
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDCVKPE 146 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~-IiVlNKiDlv~~~ 146 (311)
+++.++++|||+-.. ..+..++..+|.++.+++.+...-.....+++.+++.+.++ =+|+||.|.-...
T Consensus 111 ~~~D~viiD~pp~~~----------~~~~~al~~ad~vivv~~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~ 180 (212)
T pfam01656 111 LAYDYVIIDGAPGLG----------ELTANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGDER 180 (212)
T ss_pred CCCCEEEEECCCCCC----------HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 049989994799755----------9999999839989999489769999999999999985996229999148899836
Q ss_pred HHHHHHH
Q ss_conf 4578888
Q gi|254780941|r 147 RLLEQAE 153 (311)
Q Consensus 147 ~l~~~~~ 153 (311)
...+..+
T Consensus 181 ~~~~~~~ 187 (212)
T pfam01656 181 HLDKEIE 187 (212)
T ss_pred HHHHHHH
T ss_conf 6307899
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=97.25 E-value=0.0002 Score=48.45 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=19.9
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHC
Q ss_conf 5121-899833899868899999868
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVG 44 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g 44 (311)
.+.| +|+|+|+++||||||+.+|=+
T Consensus 25 i~~GE~~~~IG~SGAGKSTLLR~iNr 50 (253)
T TIGR02315 25 INPGEFVAVIGPSGAGKSTLLRCINR 50 (253)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 41651799973788726799987753
No 402
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=97.25 E-value=0.00056 Score=45.61 Aligned_cols=145 Identities=20% Similarity=0.265 Sum_probs=84.4
Q ss_pred EEECCCCCCHHHHHHHHH----CCCEEEECCCC----------------CCEEE-EEEEEEEECCE--------------
Q ss_conf 983389986889999986----89202105888----------------86021-27899973994--------------
Q gi|254780941|r 26 ALVGATNAGKSTLVNRFV----GAKVSIVTHKV----------------QTTRS-IVRGIVSEKES-------------- 70 (311)
Q Consensus 26 aivG~pN~GKSTL~N~l~----g~~vsivS~k~----------------~TTr~-~i~gi~~~~~~-------------- 70 (311)
.|.|.=+|||+||+..|+ |+++|+.=+-= +--+. ..-.|+..-|.
T Consensus 8 vvTGFLGaGKTTLiRhlL~NA~GkRiAvIVNEFGd~GiDG~iLk~Cgi~~C~Eeeaq~~i~ELaNGCiCCTVaDdF~Ptm 87 (349)
T TIGR02475 8 VVTGFLGAGKTTLIRHLLENAEGKRIAVIVNEFGDLGIDGEILKACGIEACSEEEAQVNIVELANGCICCTVADDFIPTM 87 (349)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHCCCEEECCCCCEECCCHHHHHHHH
T ss_conf 87375676158999999717478769999852556063679996435678880120001488088973103201256799
Q ss_pred ----------EEEEEECCCCHHHCCCCCCCCCCHH-HHHHHHHHHHCCCCHHH---HHHHCCHHHHHHHHH------HCC
Q ss_conf ----------8999987984010123575321002-34555532100110000---100000001223454------428
Q gi|254780941|r 71 ----------QIVFLDTPGIFNAKDSYHKLMIRLS-WSTIKHADIVCLVVDSH---RELKVNIHDLLKEIA------KRS 130 (311)
Q Consensus 71 ----------qiifvDTPG~~~~~~~l~~~~~~~~-~~~l~~aDiil~VvDa~---~~~~~~~~~il~~l~------~~~ 130 (311)
.=|+|=|=|+-=|+-....+ ++. .++--.+|.|+=|||+. -+.-..|.+-+...+ .+.
T Consensus 88 ~~LL~R~~~~DHIlIETSGLALPKPLV~AF--~WP~iRs~vTVDGVvtVVDg~AvAAG~fA~D~dav~aQR~aD~nLDHe 165 (349)
T TIGR02475 88 TKLLARRERPDHILIETSGLALPKPLVQAF--QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDAVDAQRAADDNLDHE 165 (349)
T ss_pred HHHHHCCCCCCEEEEECCHHHCCHHHHHHC--CCCCCCCCEEECEEEEEECHHHHCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999703889866887442100221588646--882122712754178854446503588854378999998608777888
Q ss_pred -CCC------------EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf -720------------2578721101043457888864100123343110001387
Q gi|254780941|r 131 -SRL------------ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 (311)
Q Consensus 131 -~p~------------IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~ 173 (311)
.|+ ++||||.|+++.+.+......+....+ ..+=+|+|.+|.
T Consensus 166 d~PLeElFEDQlacADLviLnKaDlldaag~~~v~a~i~~~lp-r~v~iv~a~~G~ 220 (349)
T TIGR02475 166 DSPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAAELP-RAVKIVEASHGE 220 (349)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCEEEECCCCC
T ss_conf 8851233668999889998534300488899999999997358-875177514785
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.23 E-value=0.00037 Score=46.80 Aligned_cols=133 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCC-------------------
Q ss_conf 7765410143324368512189983389986889999986------892021058---888-------------------
Q gi|254780941|r 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQ------------------- 55 (311)
Q Consensus 4 ~e~~~~~~~~~~~~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~------------------- 55 (311)
.|++.+-..+. +...+...|-++|.-++||+|-+-.|. |.++.+|+. +|.
T Consensus 81 ~eL~~llg~~~--~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~ 158 (433)
T PRK00771 81 EELVKLLGEEA--EILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGD 158 (433)
T ss_pred HHHHHHHCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999849676--5668985899973788978999999999999779946785067883689999999998638873178
Q ss_pred -CEEEEE----EEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH--HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf -602127----89997399489999879840101235753210023--45555321001100001000000012234544
Q gi|254780941|r 56 -TTRSIV----RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW--STIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 (311)
Q Consensus 56 -TTr~~i----~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~--~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~ 128 (311)
...++. .|+....++.++++||.|=+. .++.+.+... ...-..|-+++|+|+.-+... ......+.+
T Consensus 159 ~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~----~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a--~~~a~~F~~ 232 (433)
T PRK00771 159 PKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHK----LEKDLIEEMKQIKEITKPDEVILVIDATIGQQA--SEQAKAFKE 232 (433)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC----CCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHH--HHHHHHHHH
T ss_conf 89999999999999984569889997765210----409999999999877579768998654422678--999999987
Q ss_pred CCCCCEEEEEECCCHH
Q ss_conf 2872025787211010
Q gi|254780941|r 129 RSSRLILILNKIDCVK 144 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~ 144 (311)
.-.--=++++|.|--.
T Consensus 233 ~~~i~gvIlTKlDgda 248 (433)
T PRK00771 233 AVGIGGIIITKLDGTA 248 (433)
T ss_pred HCCCCEEEEECCCCCC
T ss_conf 5388737997256788
No 404
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=97.18 E-value=0.0054 Score=39.24 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=75.4
Q ss_pred EEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH--CC---------HHHHHHHHHH----C
Q ss_conf 9739948999987984010123575321002345555321001100001000--00---------0012234544----2
Q gi|254780941|r 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VN---------IHDLLKEIAK----R 129 (311)
Q Consensus 65 ~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~--~~---------~~~il~~l~~----~ 129 (311)
...++..+.++|..|-...+.+ + ....++++.|+||++.+..-. .+ -..+++.+.+ .
T Consensus 185 F~~~~~~~~l~DVGGqr~eRrK-------W-i~~Fe~V~aIiFvvsLS~yDq~l~ED~~~NRl~eSl~LF~~i~n~~~f~ 256 (350)
T pfam00503 185 FSVKKVTFRMFDVGGQRSERKK-------W-IHCFEDVTAIIFLVALSEYDQVLFEDESTNRMQESLKLFDSICNNRWFK 256 (350)
T ss_pred EEECCEEEEEECCCCCCCCCCC-------H-HHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHC
T ss_conf 8747867997248888333555-------5-6661676469998435301324335864408999999999996485245
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCHHHHHHHHHHHC------CC-CCCCCCCCCCCC
Q ss_conf 8720257872110104345788886410012334311000138--74267899999836------62-235689643343
Q gi|254780941|r 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG--HGCDDVLNYLCSTL------PL-APWVYSADQISD 200 (311)
Q Consensus 130 ~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g--~Gid~L~~~L~~~l------pe-~~~~y~~~~~Td 200 (311)
+.|+|+++||.|+...+-- . .++...|| .-+| ...+.-.++|.+.- |+ .+-+.+....||
T Consensus 257 ~t~iiLfLNK~Dlf~eKl~--------~-~~l~~~Fp--dy~g~~~~~~~~~~fi~~kF~~~~~~~~~r~iy~h~T~AtD 325 (350)
T pfam00503 257 NTSIILFLNKKDLFEEKIK--------K-SPISDYFP--EYKGPPQDYEAAKEFIKKKFVSLNRNNPKKEIYSHFTCATD 325 (350)
T ss_pred CCCEEEEEECHHHHHHHCC--------C-CCHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 7987999767788998648--------9-94341089--99999889999999999999975679889826652153205
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 0256789987599999973
Q gi|254780941|r 201 LPMFHFTAEITREKLFLHL 219 (311)
Q Consensus 201 ~~~~~~i~EiIREki~~~l 219 (311)
......+-+-+|+-|+..-
T Consensus 326 t~~i~~vf~~v~d~Il~~~ 344 (350)
T pfam00503 326 TENIRFVFDAVKDIILQEN 344 (350)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 0889999999999999999
No 405
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=97.17 E-value=0.0003 Score=47.40 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=23.5
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5121-89983389986889999986892
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.++| .+||+|..+||||||+|+|..+.
T Consensus 55 a~~GeLlA~mGsSGAGKTTLmn~La~R~ 82 (671)
T TIGR00955 55 AKPGELLAIMGSSGAGKTTLMNALAFRS 82 (671)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 1067068984787662689999985337
No 406
>KOG2743 consensus
Probab=97.17 E-value=0.00055 Score=45.65 Aligned_cols=137 Identities=22% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHC----CCEEEECCCCC--------------------------------CEEEE
Q ss_conf 3685121899833899868899999868----92021058888--------------------------------60212
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQ--------------------------------TTRSI 60 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g----~~vsivS~k~~--------------------------------TTr~~ 60 (311)
.+.-|-+.-.|.|.-+||||||+|.++. +++|-.-+--+ |-++.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCH
T ss_conf 88884443999731467868999999716788559997010365011467777503441579999986488089985430
Q ss_pred -EEE----EEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC--------CHHHHHHHHH
Q ss_conf -789----997399489999879840101235753210023455553210011000010000--------0001223454
Q gi|254780941|r 61 -VRG----IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--------NIHDLLKEIA 127 (311)
Q Consensus 61 -i~g----i~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~--------~~~~il~~l~ 127 (311)
+++ +-..+....+++.|-|+..|.....-+-......+---.|.|+-|+|+.....- ...+...++.
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA 211 (391)
T KOG2743 132 GVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA 211 (391)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 89999999846787646999604788827788887644654674043038999743668865312586541578888875
Q ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 42872025787211010434578888641
Q gi|254780941|r 128 KRSSRLILILNKIDCVKPERLLEQAEIAN 156 (311)
Q Consensus 128 ~~~~p~IiVlNKiDlv~~~~l~~~~~~~~ 156 (311)
-.+ -+++||.|++..+.+....+.+.
T Consensus 212 ~AD---~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743 212 LAD---RIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred HHH---EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 411---35640435567789999999999
No 407
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=97.15 E-value=0.00032 Score=47.21 Aligned_cols=24 Identities=58% Similarity=0.822 Sum_probs=21.7
Q ss_pred CE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 21-8998338998688999998689
Q gi|254780941|r 22 SG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 22 sg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.| .|||+|++++|||||+|.|+|-
T Consensus 377 pG~~vAl~G~SGaGKSTLL~lLLGf 401 (570)
T TIGR02857 377 PGERVALVGPSGAGKSTLLNLLLGF 401 (570)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 8704888627999788999999715
No 408
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.12 E-value=0.0011 Score=43.64 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=57.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC------CEE--EECCCC-CCEEEEEEEEEEE---CCEEEEEEECCCCHH-HCCCCC-CC
Q ss_conf 998338998688999998689------202--105888-8602127899973---994899998798401-012357-53
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGA------KVS--IVTHKV-QTTRSIVRGIVSE---KESQIVFLDTPGIFN-AKDSYH-KL 90 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~------~vs--ivS~k~-~TTr~~i~gi~~~---~~~qiifvDTPG~~~-~~~~l~-~~ 90 (311)
|.|.|+|++|||||+..++.. +++ +|.... +-.|.- .-+.+. ....+.-+|.++-.+ .++..+ +.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~G-F~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~ 80 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIG-FDIVDLASGERGPLARVGGVSGPRVGKYVVNLEE 80 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEE-EEEEECCCCCEEEEEEECCCCCCCCCCCEECHHH
T ss_conf 899789998899999999999986797074899302125893789-9999904782677444068877545771666899
Q ss_pred CCCHHHHH----HHHHHHHCCCCHHH---HHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 21002345----55532100110000---100000001223454428720257872110104345788886410012334
Q gi|254780941|r 91 MIRLSWST----IKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK 163 (311)
Q Consensus 91 ~~~~~~~~----l~~aDiil~VvDa~---~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~ 163 (311)
+-+.+..+ ..++| ++++|-- +.......+.+..+.+.++|++.++.+-. . .+..+.+....+ ..
T Consensus 81 fe~~~~~~L~~a~~~~d--livIDEIG~mEl~s~~F~~~v~~~l~~~~~vl~ti~~~~---~---~~~v~~i~~~~d-~~ 151 (168)
T pfam03266 81 FEEIALPALRRALEEAD--LIIIDEIGPMELKSPKFREAIEEVLSSNKPVLAVVHRRS---D---SPLVERIRRRPD-VK 151 (168)
T ss_pred HHHHHHHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC---C---CHHHHHHHCCCC-CE
T ss_conf 99999999984066898--999976314533149999999999669997999997258---9---838999741799-38
Q ss_pred CCCCC
Q ss_conf 31100
Q gi|254780941|r 164 TFMVS 168 (311)
Q Consensus 164 i~~IS 168 (311)
+|.++
T Consensus 152 i~~vt 156 (168)
T pfam03266 152 IFVVT 156 (168)
T ss_pred EEEEC
T ss_conf 99978
No 409
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00043 Score=46.34 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18998338998688999998689
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~ 45 (311)
-||+|+|++++|||||+|.+.|-
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999899978899999999687
No 410
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00021 Score=48.33 Aligned_cols=47 Identities=28% Similarity=0.302 Sum_probs=33.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEE
Q ss_conf 899833899868899999868920210588886021278999739948
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~q 71 (311)
.++|.|+++||||||+.+|.... ..-=+...|||.+-.|-..-.+|-
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~ 52 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYF 52 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCCCCCCCCCCEEE
T ss_conf 99998998888899999998634-937999852679999875780247
No 411
>KOG0054 consensus
Probab=97.08 E-value=0.00056 Score=45.58 Aligned_cols=44 Identities=32% Similarity=0.460 Sum_probs=32.3
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCC------------EEEECCCC----CCEEEEEEE
Q ss_conf 5121-89983389986889999986892------------02105888----860212789
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAK------------VSIVTHKV----QTTRSIVRG 63 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~------------vsivS~k~----~TTr~~i~g 63 (311)
.+.| .|||+|++++|||||+.+++|+= +|-|+-.| +|-|++|..
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvreNILF 604 (1381)
T KOG0054 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILF 604 (1381)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHHHHHCC
T ss_conf 6289889998999888899999996587556755998474898666556417856675006
No 412
>KOG0446 consensus
Probab=97.07 E-value=0.00027 Score=47.70 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=64.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCE-----EEECCCCC-----------------CEEEE-----------------
Q ss_conf 5121899833899868899999868920-----21058888-----------------60212-----------------
Q gi|254780941|r 20 SRSGCVALVGATNAGKSTLVNRFVGAKV-----SIVTHKVQ-----------------TTRSI----------------- 60 (311)
Q Consensus 20 ~ksg~VaivG~pN~GKSTL~N~l~g~~v-----sivS~k~~-----------------TTr~~----------------- 60 (311)
.-+..|++||...+||||.+++++|... .||+.+|. .|+.+
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 77885699779888611799985266356776675414650244232478865312322127752358879999998862
Q ss_pred ---------------E-EEEEEECCEEEEEEECCCCHHHC-----CCCCCCCCCHHHHHHHHHH-HHCCCCHHHHHH-HC
Q ss_conf ---------------7-89997399489999879840101-----2357532100234555532-100110000100-00
Q gi|254780941|r 61 ---------------V-RGIVSEKESQIVFLDTPGIFNAK-----DSYHKLMIRLSWSTIKHAD-IVCLVVDSHREL-KV 117 (311)
Q Consensus 61 ---------------i-~gi~~~~~~qiifvDTPG~~~~~-----~~l~~~~~~~~~~~l~~aD-iil~VvDa~~~~-~~ 117 (311)
| +.+...+--.+.++|+||+.+.. ..+...........+..-+ +++.|..|+..+ +.
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTlvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats 186 (657)
T KOG0446 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATS 186 (657)
T ss_pred HHHHHCCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCC
T ss_conf 88760899886888715750688885143167898734677999845899999999985566302565215045454347
Q ss_pred CHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 0001223454428720257872110104
Q gi|254780941|r 118 NIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 118 ~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
.-..+..+....+...+.|++|.|+.++
T Consensus 187 ~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446 187 PALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 8999998618876612588650776433
No 413
>PRK13695 putative NTPase; Provisional
Probab=97.06 E-value=0.0011 Score=43.84 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=66.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC------CEE--EECCCCCCEEEEE-EEEEEEC---CEEEEEEECCCCHH-HCCCC---
Q ss_conf 8998338998688999998689------202--1058888602127-8999739---94899998798401-01235---
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA------KVS--IVTHKVQTTRSIV-RGIVSEK---ESQIVFLDTPGIFN-AKDSY--- 87 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~------~vs--ivS~k~~TTr~~i-~gi~~~~---~~qiifvDTPG~~~-~~~~l--- 87 (311)
.|.|.|+|++|||||+..++.. +++ .|...-..- .++ .-+.+.. ...+.-+|.||-.+ .++..
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G-~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~~ 83 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGG-KRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNLE 83 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC-EEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHH
T ss_conf 999878999889999999999986369617469952560388-2850599990588568767537889855456687168
Q ss_pred --CCCCCCHHHHHHHHHHHHCCCCHHH---HHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf --7532100234555532100110000---10000000122345442872025787211010434578888641001233
Q gi|254780941|r 88 --HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE 162 (311)
Q Consensus 88 --~~~~~~~~~~~l~~aDiil~VvDa~---~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~ 162 (311)
++........++.++| ++++|-- +.......+.+..+.+.++|++.++.+ +..+.+... +.
T Consensus 84 ~~e~~~~~~l~~a~~~~d--livIDEIG~MEl~s~~F~~~V~~~L~s~kpvl~tih~----------p~v~~ik~~-~~- 149 (174)
T PRK13695 84 DLERIAIPAISRALREAD--LIIIDEIGPMELKSKKFVSAVEEVLKSEKPVIATVHR----------PVVQRIRSL-GG- 149 (174)
T ss_pred HHHHHHHHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECH----------HHHHHHHCC-CC-
T ss_conf 978998999983535787--9999631033110499999999997389989999775----------888986337-98-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 4311000138742678999998366
Q gi|254780941|r 163 KTFMVSATKGHGCDDVLNYLCSTLP 187 (311)
Q Consensus 163 ~i~~ISAk~g~Gid~L~~~L~~~lp 187 (311)
.+|.+ +..|-|.|.+.|.+.+.
T Consensus 150 ~v~~v---T~~NRd~l~~~Il~~l~ 171 (174)
T PRK13695 150 EVFWL---TPENRNILPEEILNRLK 171 (174)
T ss_pred EEEEE---CHHHHHHHHHHHHHHHH
T ss_conf 99998---93467755999999986
No 414
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=97.05 E-value=0.00062 Score=45.30 Aligned_cols=45 Identities=38% Similarity=0.571 Sum_probs=33.9
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCC
Q ss_conf 5121-89983389986889999986892021058888602127899973994899998798
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG 79 (311)
.+.| ||+++|.++.|||||+|-+.|-. +| ..|-+..++.|+ +.||
T Consensus 8 i~~GEFisliGHSGCGKSTLLNli~Gl~------~P------~~G~v~L~G~~i---~~PG 53 (230)
T TIGR01184 8 IRQGEFISLIGHSGCGKSTLLNLISGLA------QP------TSGGVILEGKQI---TEPG 53 (230)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHHCC------CC------CCCCEEECCEEC---CCCC
T ss_conf 5267369985127861789999985005------77------776167626241---7876
No 415
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.03 E-value=0.0038 Score=40.23 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=63.0
Q ss_pred EEEE-CCCCCCHHHHHHHH------HCCCEEEECCCCCC-EEEEEE--------EEEEECCEEEEEEECCCCHHHCCCCC
Q ss_conf 9983-38998688999998------68920210588886-021278--------99973994899998798401012357
Q gi|254780941|r 25 VALV-GATNAGKSTLVNRF------VGAKVSIVTHKVQT-TRSIVR--------GIVSEKESQIVFLDTPGIFNAKDSYH 88 (311)
Q Consensus 25 Vaiv-G~pN~GKSTL~N~l------~g~~vsivS~k~~T-Tr~~i~--------gi~~~~~~qiifvDTPG~~~~~~~l~ 88 (311)
|+++ |+=+|||||+-=.| .|.++.++--=+|. ..+... .....-...++++|||.-.
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D~~~~~l~~~~~~~~~~~~~~~~vl~gD~viiD~ppg~------- 74 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGI------- 74 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCHHHCCCCCCEEEEECCCCC-------
T ss_conf 8997399987099999999999997799189995899999836661765566531311266999999799998-------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC-CEEEEEECCC
Q ss_conf 53210023455553210011000010000000122345442872-0257872110
Q gi|254780941|r 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 (311)
Q Consensus 89 ~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p-~IiVlNKiDl 142 (311)
...+..++..+|.++.++..+...-.....+++.+.+.+.+ .-+|+|+.+.
T Consensus 75 ---~~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~ 126 (179)
T cd02036 75 ---ERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred ---CHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf ---8899999984681256378858899999999999982599646999845467
No 416
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.02 E-value=0.00082 Score=44.54 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=54.9
Q ss_pred HHHHHHHCCCCHHHHHH-HC-CHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 55532100110000100-00-000122345442872025787211010434578-8886410012334311000138742
Q gi|254780941|r 99 IKHADIVCLVVDSHREL-KV-NIHDLLKEIAKRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 99 l~~aDiil~VvDa~~~~-~~-~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~-~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
..+.|-+++|+-+.++. .. ....++-.+...+..-++|+||+|++..+.... .........+ .+++.+||+++.|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g-y~v~~~s~~~~~~~ 155 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG-YPVLFVSAKNGDGL 155 (301)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC-EEEEEECCCCCCCH
T ss_conf 26655199999626899898899999999977699579999753367616778999999998679-35999537676558
Q ss_pred HHHHHHHHHHC
Q ss_conf 67899999836
Q gi|254780941|r 176 DDVLNYLCSTL 186 (311)
Q Consensus 176 d~L~~~L~~~l 186 (311)
++|.+++....
T Consensus 156 ~~l~~~l~~~~ 166 (301)
T COG1162 156 EELAELLAGKI 166 (301)
T ss_pred HHHHHHHCCCE
T ss_conf 99999755884
No 417
>KOG1424 consensus
Probab=97.02 E-value=0.00058 Score=45.49 Aligned_cols=78 Identities=28% Similarity=0.416 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHH---CCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 21002345555321001100001000---000012234544287202578721101043457888864100123343110
Q gi|254780941|r 91 MIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMV 167 (311)
Q Consensus 91 ~~~~~~~~l~~aDiil~VvDa~~~~~---~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~I 167 (311)
+=+..|..++.+|+|+.+|||..+.- ++....+..... .+..++++||+|++.+++.....+...... -.+++-
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~-~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~ 240 (562)
T KOG1424 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP-SKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFF 240 (562)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCC-CCCEEEEEEHHHCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_conf 99999998743244899961578631578649999742054-312489972453189999999999987549--739997
Q ss_pred CCCC
Q ss_conf 0013
Q gi|254780941|r 168 SATK 171 (311)
Q Consensus 168 SAk~ 171 (311)
||.-
T Consensus 241 SA~~ 244 (562)
T KOG1424 241 SALA 244 (562)
T ss_pred ECCC
T ss_conf 4120
No 418
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=96.97 E-value=0.00029 Score=47.48 Aligned_cols=156 Identities=18% Similarity=0.275 Sum_probs=92.7
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHC------CCE-------------------------EEECCCCC-CEEEEEEE
Q ss_conf 43685121899833899868899999868------920-------------------------21058888-60212789
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVG------AKV-------------------------SIVTHKVQ-TTRSIVRG 63 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g------~~v-------------------------sivS~k~~-TTr~~i~g 63 (311)
.++..|.-.+.+||-=++||+|=+=.|.. .+| -+|+++++ . |+-.-
T Consensus 76 ~~~~~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~--DPAaV 153 (284)
T TIGR00064 76 LPEEKKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNA--DPAAV 153 (284)
T ss_pred CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCC--CCHHH
T ss_conf 0147897799998440886010288999999874990899827524799999999989883875540788988--71789
Q ss_pred EE------EECCEEEEEEECCC-CHHHCCCCCCC--CCCHHHHHHH-H-HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 99------73994899998798-40101235753--2100234555-5-3210011000010000000122345442872
Q gi|254780941|r 64 IV------SEKESQIVFLDTPG-IFNAKDSYHKL--MIRLSWSTIK-H-ADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 (311)
Q Consensus 64 i~------~~~~~qiifvDTPG-~~~~~~~l~~~--~~~~~~~~l~-~-aDiil~VvDa~~~~~~~~~~il~~l~~~~~p 132 (311)
++ -..++-++|+||.| +|...+.+++. ..+...+... + -|.+++|+||+-+... ..-.+.+.+.-.=
T Consensus 154 ~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna--~~QA~~F~eav~l 231 (284)
T TIGR00064 154 IFDAIQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNA--LEQAKVFNEAVGL 231 (284)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH--HHHHHHHHHHCCC
T ss_conf 99989999874997899734754546620399999999987321025787557542202220308--9999998654068
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0257872110104345788886410012334311000138742678999
Q gi|254780941|r 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 (311)
Q Consensus 133 ~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~ 181 (311)
-=+++||.|--.+-...--+... ++ .+|.++ =-|+++|+|..+
T Consensus 232 tGiiLTKLDg~AKGG~~l~i~~~---l~-~Pv~~~--G~GE~~dDL~~F 274 (284)
T TIGR00064 232 TGIILTKLDGTAKGGIILAIAYE---LK-LPVKFI--GVGEKIDDLAPF 274 (284)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH---HC-CCEEEE--ECCCCHHHHCCC
T ss_conf 85899634688037899988998---57-976998--548873320147
No 419
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=96.97 E-value=0.00049 Score=45.96 Aligned_cols=26 Identities=46% Similarity=0.745 Sum_probs=22.0
Q ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHC
Q ss_conf 85121-899833899868899999868
Q gi|254780941|r 19 NSRSG-CVALVGATNAGKSTLVNRFVG 44 (311)
Q Consensus 19 ~~ksg-~VaivG~pN~GKSTL~N~l~g 44 (311)
.-|+| .||||||++|||+||+|-|=.
T Consensus 357 ~~KAG~TvAIVGPTGAGKTTLiNLLQR 383 (592)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQR 383 (592)
T ss_pred EEECCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 652475689877899717899887753
No 420
>KOG1533 consensus
Probab=96.92 E-value=0.00048 Score=46.04 Aligned_cols=117 Identities=22% Similarity=0.367 Sum_probs=62.6
Q ss_pred EEEECCCCCCHHHHHHHH------HCCCEEEECCCCC-CE---------EEEE----------E---EE-----------
Q ss_conf 998338998688999998------6892021058888-60---------2127----------8---99-----------
Q gi|254780941|r 25 VALVGATNAGKSTLVNRF------VGAKVSIVTHKVQ-TT---------RSIV----------R---GI----------- 64 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l------~g~~vsivS~k~~-TT---------r~~i----------~---gi----------- 64 (311)
.+++|+|++||||..|-+ +|+++.+|---|. -+ |.-+ . |.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 68876999985311320999999748962799568765678887765199971399999985879961279999999854
Q ss_pred -------EEECCEEEEEEECCCCHH---HCCCCCCCCCCHHHHHHHHHHH---HCCCCHHH------HHHHCCHHHHHHH
Q ss_conf -------973994899998798401---0123575321002345555321---00110000------1000000012234
Q gi|254780941|r 65 -------VSEKESQIVFLDTPGIFN---AKDSYHKLMIRLSWSTIKHADI---VCLVVDSH------RELKVNIHDLLKE 125 (311)
Q Consensus 65 -------~~~~~~qiifvDTPG~~~---~~~~l~~~~~~~~~~~l~~aDi---il~VvDa~------~~~~~~~~~il~~ 125 (311)
+.......+++|-||-.+ .++.+ ...++.++..|. ++.++|+. +.+. ...-.+.-
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l-----~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS-~lL~sl~t 158 (290)
T KOG1533 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSL-----NKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS-SLLVSLAT 158 (290)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEEECCCHH-----HHHHHHHHHCCCEEEEEEEEECEEECCHHHHHH-HHHHHHHH
T ss_conf 499999745234748999579827987425609-----999999997695379997330214378489999-99999999
Q ss_pred HHHCCCCCEEEEEECCCHHHHH
Q ss_conf 5442872025787211010434
Q gi|254780941|r 126 IAKRSSRLILILNKIDCVKPER 147 (311)
Q Consensus 126 l~~~~~p~IiVlNKiDlv~~~~ 147 (311)
+.....|.+-|+.|+|+.++..
T Consensus 159 Ml~melphVNvlSK~Dl~~~yg 180 (290)
T KOG1533 159 MLHMELPHVNVLSKADLLKKYG 180 (290)
T ss_pred HHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9862365001425767787616
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.92 E-value=0.00078 Score=44.67 Aligned_cols=27 Identities=44% Similarity=0.666 Sum_probs=22.4
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5121-89983389986889999986892
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.+.| ||||+|++++|||||+|-|-+=.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7499899998999998999999996466
No 422
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.90 E-value=0.00045 Score=46.23 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCEEEEEEEEEEECCEEEEEEECC
Q ss_conf 899833899868899999868920-2105888860212789997399489999879
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKV-SIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~v-sivS~k~~TTr~~i~gi~~~~~~qiifvDTP 78 (311)
.+.++|+++|||+||++.|+...- ......++|||.+..|- .++..+.|++-.
T Consensus 4 ~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE--~~G~dY~Fvs~~ 57 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGE--VNGVDYHFVSRE 57 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCCCEEEEEEHH
T ss_conf 799999999999999999986396450577876727998899--999636997179
No 423
>pfam02263 GBP Guanylate-binding protein, N-terminal domain. Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Probab=96.90 E-value=0.0064 Score=38.78 Aligned_cols=58 Identities=31% Similarity=0.399 Sum_probs=40.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCE-EEECCC--CCCEEEEEEEEEE-------ECCEEEEEEECCCCHHH
Q ss_conf 121899833899868899999868920-210588--8860212789997-------39948999987984010
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKV-SIVTHK--VQTTRSIVRGIVS-------EKESQIVFLDTPGIFNA 83 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~v-sivS~k--~~TTr~~i~gi~~-------~~~~qiifvDTPG~~~~ 83 (311)
.-+.|+|+|+.-.|||-|+|.|+|..- -.+.+. |.| .||.. ..+..++|+||-|+.+.
T Consensus 20 pv~vvsv~G~~RtGKSfLlN~l~~~~~gF~~g~~~~~~T-----~GIwmw~~p~~~~~~~~v~llDTeG~~d~ 87 (264)
T pfam02263 20 PVVVVAIVGLYRTGKSYLMNFLAGKLTGFSLGSTVESET-----KGIWMWCVPHPNKPKHTLVLLDTEGLGDV 87 (264)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-----CEEEEEECCCCCCCCEEEEEEECCCCCCH
T ss_conf 859999777886874899999837577987477757666-----50588604457888617999814665653
No 424
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.89 E-value=0.00072 Score=44.91 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 685121899833899868899999868
Q gi|254780941|r 18 DNSRSGCVALVGATNAGKSTLVNRFVG 44 (311)
Q Consensus 18 ~~~ksg~VaivG~pN~GKSTL~N~l~g 44 (311)
=.+..|++||+|+.++|||||++.|.+
T Consensus 18 l~ip~GitaIvGpsGsGKSTLl~~i~~ 44 (197)
T cd03278 18 IPFPPGLTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 973898289999999988999999998
No 425
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.89 E-value=0.0036 Score=40.40 Aligned_cols=171 Identities=13% Similarity=0.167 Sum_probs=90.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH-HH
Q ss_conf 99833899868899999868920210588886021278999739948999987984010123575321002345555-32
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH-AD 103 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~-aD 103 (311)
|-++|+|+.|||-+-.++.++- +..++=+|.+-+...--.-++..++.+++..+. +-
T Consensus 262 vLL~GpPG~GKtl~AKAvA~e~----------------------~~p~l~l~~~~l~~~~vGesE~~~r~~f~~A~~~aP 319 (491)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANEW----------------------NLPLLRLDVGKLFGGIVGESESRMRQMIQLAETISP 319 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------------------CCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9997999987899999998663----------------------894699667997560067049999999999986198
Q ss_pred HHCCCCHHHHHHH------------CCHHHHHHHHHHCCCCCEEEE--EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1001100001000------------000012234544287202578--72110104345788886410012334311000
Q gi|254780941|r 104 IVCLVVDSHRELK------------VNIHDLLKEIAKRSSRLILIL--NKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 (311)
Q Consensus 104 iil~VvDa~~~~~------------~~~~~il~~l~~~~~p~IiVl--NKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISA 169 (311)
.|+|+=+..+... .....++.++.....|+++|. |.+|.++++-+ ...-|+++|+|.-
T Consensus 320 ~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~pell--------R~GRFD~~~~v~l 391 (491)
T CHL00195 320 CILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANNIDSLPLELL--------RKGRFDEIFFLDL 391 (491)
T ss_pred EEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHC--------CCCCCCEEEECCC
T ss_conf 58997465454258888888723289999999986468997699995899755898770--------8987770476489
Q ss_pred CCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHCCCCC
Q ss_conf 13874267899999836-62235689643343025678---9987599999973004564
Q gi|254780941|r 170 TKGHGCDDVLNYLCSTL-PLAPWVYSADQISDLPMFHF---TAEITREKLFLHLHKEIPY 225 (311)
Q Consensus 170 k~g~Gid~L~~~L~~~l-pe~~~~y~~~~~Td~~~~~~---i~EiIREki~~~l~~EiPY 225 (311)
=+...-.++.+...... |..+..|+-+.+...++-|- +..+++|.++.-+.+.-|.
T Consensus 392 P~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~~r~~ 451 (491)
T CHL00195 392 PNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSEKREF 451 (491)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 598999999999985447887554699999976859888999999999999998758866
No 426
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.88 E-value=0.00056 Score=45.59 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCEEEEEEEEEEECCEEEEEEE
Q ss_conf 89983389986889999986892-021058888602127899973994899998
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK-VSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~-vsivS~k~~TTr~~i~gi~~~~~~qiifvD 76 (311)
.|+|+|+++|||+||+++|+.+. -...-..++|||.+-.|- .++..+.|++
T Consensus 3 livl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E--~~G~dY~Fvs 54 (182)
T pfam00625 3 PIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGE--VDGKDYHFVS 54 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCCCEEEEEC
T ss_conf 699989899999999999998486673445765547999878--7896579965
No 427
>KOG0096 consensus
Probab=96.87 E-value=0.0052 Score=39.37 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=84.1
Q ss_pred CEE-EEEECCCCCCHHHHHHHHHCCCEEEEC-CCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 218-998338998688999998689202105-888860212789997399489999879840101235753210023455
Q gi|254780941|r 22 SGC-VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 22 sg~-VaivG~pN~GKSTL~N~l~g~~vsivS-~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
-+| ..++|.-..||.|++++.+-..-+-+. +..|.-+++...--+.+...+...||.|--......+.+. +
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy-------I 81 (216)
T KOG0096 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY-------I 81 (216)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHCCCCEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEECCCCCCCE-------E
T ss_conf 528999834786444531343530321021367510377654550456847888630444212323244527-------7
Q ss_pred HHHHHHCCCCHHHHHHHC-CHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 553210011000010000-0001223454--4287202578721101043457888864100123343110001387426
Q gi|254780941|r 100 KHADIVCLVVDSHRELKV-NIHDLLKEIA--KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~-~~~~il~~l~--~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid 176 (311)
.. ...++++|.+...+- ........+. ..+.|++++-||.|.-.++.-.+.+....+ . .-+.+.+||+++.|.+
T Consensus 82 ~~-qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~~k-k-nl~y~~~Saksn~Nfe 158 (216)
T KOG0096 82 QG-QCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRK-K-NLQYYEISAKSNYNFE 158 (216)
T ss_pred EC-CEEEEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCEEEEC-C-CCEEEEEECCCCCCCC
T ss_conf 02-1468886100145562221789999998627870454450121551013543014521-5-5145774010255645
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 78999998366223
Q gi|254780941|r 177 DVLNYLCSTLPLAP 190 (311)
Q Consensus 177 ~L~~~L~~~lpe~~ 190 (311)
.=.-++...+--+|
T Consensus 159 kPF~~LarKl~G~p 172 (216)
T KOG0096 159 RPFLWLARKLTGDP 172 (216)
T ss_pred CCHHHHHHHHCCCC
T ss_conf 40677765505997
No 428
>TIGR01009 rpsC_bact ribosomal protein S3; InterPro: IPR005704 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes the bacterial type of ribosomal protein S3 and also and many chloroplast forms. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=96.87 E-value=0.029 Score=34.55 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCCHHH
Q ss_conf 235689643343-0256789987599999973004564204788533106677235899999827984154874665889
Q gi|254780941|r 189 APWVYSADQISD-LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNI 267 (311)
Q Consensus 189 ~~~~y~~~~~Td-~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~I~v~k~sqk~IiiGk~G~~i 267 (311)
+-||.++..+.+ ..+++ -||+.|...|... +-.|.-.+.+-..+ -.|+.+|+..|++ ||||++|+-|
T Consensus 21 S~WyA~~k~y~~~L~ED~----KIR~~i~k~l~~~---~a~iS~veIeR~~~--~~v~V~IhtArPg---~vIGkkG~~i 88 (217)
T TIGR01009 21 SRWYADPKEYAELLHEDL----KIRNLIKKELKKK---NAGISDVEIERTAD--KKVRVTIHTARPG---IVIGKKGSEI 88 (217)
T ss_pred EEECCCCCCCHHHHHHHH----HHHHHHHHHCCCC---CCCCCEEEEEECCC--CEEEEEEEECCCC---EEECCCCCHH
T ss_conf 376588753035666438----9999873211335---43313279981699--7889999827886---5885788458
Q ss_pred HHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCHHHHHH
Q ss_conf 9999999999999848--981378998845883459799985
Q gi|254780941|r 268 KTISLEAKKEIAEILE--QPVHLILFVKVQKDWGHDPKCCPQ 307 (311)
Q Consensus 268 k~I~~~ar~~le~~~~--~~V~L~l~Vkv~k~W~~~~~~l~~ 307 (311)
-+| +++|+++.+ ++|++.+. =-|+=.-|++++.+
T Consensus 89 E~l----~~~l~k~~~~~k~v~i~I~--EVk~p~ldA~LvA~ 124 (217)
T TIGR01009 89 EKL----KKALQKLTGSVKEVQINIK--EVKRPELDAQLVAQ 124 (217)
T ss_pred HHH----HHHHHHHHCCEEEEEEEEE--ECCCCCCCHHHHHH
T ss_conf 999----9999988478358999898--74885738788998
No 429
>KOG0054 consensus
Probab=96.85 E-value=0.00078 Score=44.67 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.|+||||++||||||+++|.+=
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054 1168 KVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 6888689899889999999961
No 430
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.83 E-value=0.00098 Score=44.05 Aligned_cols=26 Identities=35% Similarity=0.701 Sum_probs=22.6
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.+.| ++||+|+.++|||||+|.|.|.
T Consensus 30 i~~Ge~~~ilGpnGsGKSTLl~~i~G~ 56 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EECCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 918809999989996099999999678
No 431
>KOG3859 consensus
Probab=96.83 E-value=0.0019 Score=42.20 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=63.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEE----EEECCE--EEEEEECCCCHHHCCC--CCCCCC---
Q ss_conf 89983389986889999986892021058888602127899----973994--8999987984010123--575321---
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI----VSEKES--QIVFLDTPGIFNAKDS--YHKLMI--- 92 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi----~~~~~~--qiifvDTPG~~~~~~~--l~~~~~--- 92 (311)
.|.-||.++.|||||++.|.+.+.-- .+-+++--..-+-. +...+. .+.++||.||.+.-++ ..+-.+
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f~~-~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyi 122 (406)
T KOG3859 44 NILCVGETGLGKSTLMDTLFNTKFES-EPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYI 122 (406)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCEEECCHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 78884267754778999986366678-87866788732100214344257168999984034432137100102699999
Q ss_pred --------------CHHHHHHHH--HHHHCCCCHH-HHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
Q ss_conf --------------002345555--3210011000-010000000122345442872025787211010434578
Q gi|254780941|r 93 --------------RLSWSTIKH--ADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE 150 (311)
Q Consensus 93 --------------~~~~~~l~~--aDiil~VvDa-~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~ 150 (311)
+.+.....+ ..++||-+.. ..++..-|+-.++.+. ....+|-|+-|.|.+++..+..
T Consensus 123 daQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK~eL~~ 196 (406)
T KOG3859 123 DAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISKEELKR 196 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999877888888752672589999956887414577999999875-3401578888764430999999
No 432
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.83 E-value=0.00098 Score=44.03 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=22.4
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 121-89983389986889999986892
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+.| .|||||++++|||||++.|+|--
T Consensus 61 ~~Ge~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 499999999999981999999995787
No 433
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.80 E-value=0.0011 Score=43.81 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
++||+|++++|||||+++|+|.-
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~ 51 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999980999999985556
No 434
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.80 E-value=0.026 Score=34.87 Aligned_cols=127 Identities=12% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH---HCCCCCEEEEEECCCHH
Q ss_conf 994899998798401012357532100234555532100110000100000001223454---42872025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~---~~~~p~IiVlNKiDlv~ 144 (311)
+.+.++++|||+-. ...+..++.-||.++.++.+...........+..+. ......-+++|+.|.-.
T Consensus 113 ~~~D~viiD~pp~l----------~~~~~~al~aad~vlipv~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 113 AARDWVLIDLPRGP----------SPITDQALAAADLVLVVVNADAACYATLHQLALALLARSVPPDGIHYLINQFQPAR 182 (246)
T ss_pred CCCCEEEEECCCCC----------CHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 67988999489987----------49999999988947998189989999999999999984277675178863026401
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4345788886410012334311000138742678999998366223568964334302567899875
Q gi|254780941|r 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 (311)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiI 211 (311)
.-. ....+.+.+.++ ..+++.+--.. ..+.+......|- +.|.++.-.-+.-+.++.|++
T Consensus 183 ~~~-~~~~~~l~~~~~-~~~~~~~I~~~---~~v~eA~~~g~pv--~~~~p~S~aa~~y~~LA~~ll 242 (246)
T TIGR03371 183 QLS-RDVRAVLRATLG-SRLLPMFVHRD---EAVAEALARGTPV--FNYAPHSQAAHDIRTLAFWLL 242 (246)
T ss_pred HHH-HHHHHHHHHHCC-CCEEEEECCCC---HHHHHHHHCCCCC--EEECCCCHHHHHHHHHHHHHH
T ss_conf 589-999999999749-88162268997---7999999769982--669958989999999999999
No 435
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0011 Score=43.80 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 218998338998688999998689
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~ 45 (311)
-.+++|+|+.++|||||+|.|.|-
T Consensus 24 Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995599999999769
No 436
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.77 E-value=0.0007 Score=44.97 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.0
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 43685121899833899868899999868
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVG 44 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g 44 (311)
..-++..|.+||+|+.+||||||+++|.+
T Consensus 16 ~~i~f~~~itaivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 16 SEIEFFSPLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred CEEEEECCEEEEECCCCCCHHHHHHHHHH
T ss_conf 35885088899998999999999999863
No 437
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.75 E-value=0.025 Score=34.98 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=70.1
Q ss_pred EEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----C------CHHHHHHHHHH----
Q ss_conf 99739948999987984010123575321002345555321001100001000-----0------00012234544----
Q gi|254780941|r 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK-----V------NIHDLLKEIAK---- 128 (311)
Q Consensus 64 i~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~-----~------~~~~il~~l~~---- 128 (311)
..+.++..+.++|.+|-...++ ++ ....++++.|+||+..+..-. . +-..+++.+.+
T Consensus 155 ~F~~~~~~~~~~DVGGQrseRk-------KW-i~~Fe~V~aiiFvvsLs~yDq~l~Ed~~~Nrl~eSl~LF~~i~n~~~f 226 (317)
T cd00066 155 KFTIKNLKFRMFDVGGQRSERK-------KW-IHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred EEEECCEEEEEECCCCCCCCCC-------CH-HHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
T ss_conf 9997776799851688844343-------46-888467766998852353233555664517899999999999748745
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH----CCC-CCCCC-CCCCCCCCH
Q ss_conf 287202578721101043457888864100123343110001387426789999983----662-23568-964334302
Q gi|254780941|r 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST----LPL-APWVY-SADQISDLP 202 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~----lpe-~~~~y-~~~~~Td~~ 202 (311)
.+.|+|+.+||.|+...+--. .+....||==.-.+...+...+++... .+. +...| +....||..
T Consensus 227 ~~~~iiLflNK~Dlf~eKi~~---------~~l~~~Fpdy~g~~~~~~~a~~fi~~kF~~~~~~~~r~~y~h~T~A~Dt~ 297 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKK---------SPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTE 297 (317)
T ss_pred CCCCEEEEEECHHHHHHHCCC---------CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECHH
T ss_conf 579889998576999986479---------95442288999999999999999999999853689985778756110528
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5678998759999997
Q gi|254780941|r 203 MFHFTAEITREKLFLH 218 (311)
Q Consensus 203 ~~~~i~EiIREki~~~ 218 (311)
....+-+.+|+-|+..
T Consensus 298 ~i~~vf~~v~d~I~~~ 313 (317)
T cd00066 298 NIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 438
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.73 E-value=0.001 Score=43.86 Aligned_cols=25 Identities=52% Similarity=0.709 Sum_probs=21.4
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 121-8998338998688999998689
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
|.| .||||||++||||||+.-|..-
T Consensus 364 ~PGEtvAlVGPSGAGKSTlf~LLLRF 389 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRF 389 (576)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 27765887668876279999999860
No 439
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.72 E-value=0.0011 Score=43.77 Aligned_cols=23 Identities=48% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.|||+|++++|||||+|-+.|--
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79997788865788999987424
No 440
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=96.72 E-value=0.0011 Score=43.84 Aligned_cols=106 Identities=19% Similarity=0.333 Sum_probs=56.6
Q ss_pred CCEE-EEEECCCCCCHHHHHHHHHCCC-EEEEC-C------C-CCCEEEEEEEEE-------------------------
Q ss_conf 1218-9983389986889999986892-02105-8------8-886021278999-------------------------
Q gi|254780941|r 21 RSGC-VALVGATNAGKSTLVNRFVGAK-VSIVT-H------K-VQTTRSIVRGIV------------------------- 65 (311)
Q Consensus 21 ksg~-VaivG~pN~GKSTL~N~l~g~~-vsivS-~------k-~~TTr~~i~gi~------------------------- 65 (311)
|.|. =||+|..+|||+||+|+|.++. .-+++ . . -+.|=.+..|=+
T Consensus 851 kPG~lTALMG~SGAGKTTLLn~La~R~t~GvIT~G~~lVNG~~lD~sF~R~iGYvQQQD~Hl~~~TVREaL~FSA~LRqP 930 (1466)
T TIGR00956 851 KPGTLTALMGASGAGKTTLLNVLAERVTTGVITDGDRLVNGRPLDSSFQRSIGYVQQQDLHLETSTVREALRFSAYLRQP 930 (1466)
T ss_pred ECCEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCEEEECCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHCCC
T ss_conf 77857651578876357888644330432177057155088455755574413245422122420288999999984598
Q ss_pred -------------------EECCEEEEEEECCCC-H---HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCH---
Q ss_conf -------------------739948999987984-0---10123575321002345555321001100001000000---
Q gi|254780941|r 66 -------------------SEKESQIVFLDTPGI-F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI--- 119 (311)
Q Consensus 66 -------------------~~~~~qiifvDTPG~-~---~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~--- 119 (311)
..+.+.=-+|=+||. . ++|+ ......+-...-++++|+=..+.+++.+.
T Consensus 931 ~~vs~~EK~~YVe~vI~lLEMe~YaDAvVG~pG~tGLNVEQRK-----RLTIGVELvAkPkLL~FLDEPTSGLDSQtAWs 1005 (1466)
T TIGR00956 931 KSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGETGLNVEQRK-----RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 1005 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCCCHHHHH-----HHHHHHHHHHCCCHHEECCCCCCCHHHHHHHH
T ss_conf 5678653246888887664101022113515677888732321-----01033432216320002158897055899999
Q ss_pred -HHHHHHHHHCCC
Q ss_conf -012234544287
Q gi|254780941|r 120 -HDLLKEIAKRSS 131 (311)
Q Consensus 120 -~~il~~l~~~~~ 131 (311)
..+++++.+.+.
T Consensus 1006 i~~l~RKLad~GQ 1018 (1466)
T TIGR00956 1006 ICKLLRKLADHGQ 1018 (1466)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999998875598
No 441
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.72 E-value=0.00093 Score=44.18 Aligned_cols=26 Identities=50% Similarity=0.622 Sum_probs=21.4
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
-+.| .||||||+++|||||+|-|..-
T Consensus 385 ~~~G~~vALVGRSGSGKsTlv~LlPRF 411 (603)
T TIGR02203 385 VEPGETVALVGRSGSGKSTLVNLLPRF 411 (603)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHCCCC
T ss_conf 158735998706885389998552366
No 442
>PRK10416 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.01 Score=37.51 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=77.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC------CCEEEECC---CCC--------CEEEEEEEEE------------------E
Q ss_conf 21899833899868899999868------92021058---888--------6021278999------------------7
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVG------AKVSIVTH---KVQ--------TTRSIVRGIV------------------S 66 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g------~~vsivS~---k~~--------TTr~~i~gi~------------------~ 66 (311)
.-.|.++|--++||+|-+-.|.. .++.+++. +|. ..|..+.-+. .
T Consensus 295 P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa~V~~dai~~a~ 374 (499)
T PRK10416 295 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 374 (499)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87999974787878989999999999779953788406675689999999842457369836899997999999999999
Q ss_pred ECCEEEEEEECCCC-HHHCCCCCCCCCCHHHHHHHH-----HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 39948999987984-010123575321002345555-----321001100001000000012234544287202578721
Q gi|254780941|r 67 EKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKH-----ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 (311)
Q Consensus 67 ~~~~qiifvDTPG~-~~~~~~l~~~~~~~~~~~l~~-----aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKi 140 (311)
..++.++++||.|= +...+.+.+. +...+.+.. -+-+++|+|++-+... ....+.+.+.-.--=+|++|+
T Consensus 375 ~~~~DvviiDTAGRl~~~~~LM~EL--~ki~rvi~k~~~~aP~e~lLVlDa~tGQna--~~qak~F~e~~~ltGiIlTKl 450 (499)
T PRK10416 375 ARNVDVLIADTAGRLQNKSHLMEEL--KKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLTGITLTKL 450 (499)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCCCCCEEEEEEECCCCHHH--HHHHHHHHHCCCCCEEEEECC
T ss_conf 7299989985776432609999999--999999972378999748999778767789--999999844279975999656
Q ss_pred CCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 101043457-8888641001233431100013874267899
Q gi|254780941|r 141 DCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 (311)
Q Consensus 141 Dlv~~~~l~-~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~ 180 (311)
|---+-... ...... + ..|.+|. .|+++++|..
T Consensus 451 DGtAKGG~~lsi~~~~----~-~PI~fiG--~GE~idDL~~ 484 (499)
T PRK10416 451 DGTAKGGVIFSVADQF----G-IPIRYIG--VGERIEDLRP 484 (499)
T ss_pred CCCCCCHHHHHHHHHH----C-CCEEEEE--CCCCHHHCCC
T ss_conf 7788525999999998----8-3959986--7988220667
No 443
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.71 E-value=0.0015 Score=42.86 Aligned_cols=26 Identities=38% Similarity=0.647 Sum_probs=22.8
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+|-| +++|+|+.+||||||++.|.|.
T Consensus 23 pk~GEi~gLiGpNGaGKSTLlk~i~Gl 49 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989809999899997099999999679
No 444
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0013 Score=43.21 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
-+++|+|+.++|||||+|.+.|-.
T Consensus 28 e~~~lvGpnGaGKSTLl~~i~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999846999999997599
No 445
>PTZ00243 ABC transporter; Provisional
Probab=96.69 E-value=0.0017 Score=42.48 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=29.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC------------EEEECCCC----CCEEEEEE
Q ss_conf 189983389986889999986892------------02105888----86021278
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK------------VSIVTHKV----QTTRSIVR 62 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~------------vsivS~k~----~TTr~~i~ 62 (311)
-.++|+|+.++|||||+.+|+|+- +|-|+-.| +|=|++|.
T Consensus 687 ~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~TiReNIL 742 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNIL 742 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCHHHHHC
T ss_conf 78999899998799999999688843563899747089757844405873999810
No 446
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.69 E-value=0.0048 Score=39.55 Aligned_cols=29 Identities=38% Similarity=0.714 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHC------CCEEEECCC
Q ss_conf 99833899868899999868------920210588
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVG------AKVSIVTHK 53 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g------~~vsivS~k 53 (311)
++|+|+.|+||+||+++|+. .+|+.+=+.
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ 36 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVKALKARGYRVATIKHD 36 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 37896258867899999999997079950898608
No 447
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=96.68 E-value=0.0039 Score=40.19 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHC
Q ss_conf 685121-899833899868899999868
Q gi|254780941|r 18 DNSRSG-CVALVGATNAGKSTLVNRFVG 44 (311)
Q Consensus 18 ~~~ksg-~VaivG~pN~GKSTL~N~l~g 44 (311)
...|-- ..|++|||+||||||=+++..
T Consensus 445 ~~~~GpqIlClvGPPGVGKTSlg~SIA~ 472 (941)
T TIGR00763 445 GKMKGPQILCLVGPPGVGKTSLGKSIAK 472 (941)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7888876787207269542227899999
No 448
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.68 E-value=0.0014 Score=43.00 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18998338998688999998689
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~ 45 (311)
-+|+|+|+.++|||||+|.+.|-
T Consensus 28 e~v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999979995399999999629
No 449
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.68 E-value=0.0015 Score=42.86 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+|||+|+.++|||||++.|.|--
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999980999999996666
No 450
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.66 E-value=0.0015 Score=42.86 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
..|||+|++++|||||++.|+|-.
T Consensus 30 ~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999998999999982386
No 451
>KOG1191 consensus
Probab=96.66 E-value=0.00044 Score=46.31 Aligned_cols=55 Identities=20% Similarity=0.084 Sum_probs=49.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH
Q ss_conf 8998338998688999998689202105888860212789997399489999879840
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~ 81 (311)
-+.+.|+||||||+|.|. +...+|++.++.|||..+|++..++..|+-.|+.|++
T Consensus 77 s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~ 131 (531)
T KOG1191 77 SVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQ 131 (531)
T ss_pred CCCCCCCCCCCCCCCCCH---HHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEEE
T ss_conf 132578875450101485---5512246888742213341003588223433258899
No 452
>PHA02518 ParA-like protein; Provisional
Probab=96.65 E-value=0.023 Score=35.12 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=79.1
Q ss_pred EEEE-CCCCCCHHHHHHHH------HCCCEEEECCCCCCE-------EE---EEEEEE------------EECCEEEEEE
Q ss_conf 9983-38998688999998------689202105888860-------21---278999------------7399489999
Q gi|254780941|r 25 VALV-GATNAGKSTLVNRF------VGAKVSIVTHKVQTT-------RS---IVRGIV------------SEKESQIVFL 75 (311)
Q Consensus 25 Vaiv-G~pN~GKSTL~N~l------~g~~vsivS~k~~TT-------r~---~i~gi~------------~~~~~qiifv 75 (311)
|+++ -+=+|||||+-=.| -|.+|.++--=||-+ |. +..... ..+++.++++
T Consensus 3 Iav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~viI 82 (211)
T PHA02518 3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVV 82 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEE
T ss_conf 99980899974999999999999978994899977999678899985226899740121367799999974067888998
Q ss_pred ECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC---CHHHHHHHHHH--CCCCC-EEEEEECCCHHHHHHH
Q ss_conf 879840101235753210023455553210011000010000---00012234544--28720-2578721101043457
Q gi|254780941|r 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAK--RSSRL-ILILNKIDCVKPERLL 149 (311)
Q Consensus 76 DTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~---~~~~il~~l~~--~~~p~-IiVlNKiDlv~~~~l~ 149 (311)
||||-.. .....++.-||.++.-+..+..--. ...++++..+. .+.+. .++.|..+.-... ..
T Consensus 83 D~pp~~~----------~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 151 (211)
T PHA02518 83 DGAPQDS----------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQL-YR 151 (211)
T ss_pred CCCCCCH----------HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH-HH
T ss_conf 8999742----------999999995896999637868789999999999999998665675168886235866569-99
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8888641001233431100013874267899999836622356896433430256789987599
Q gi|254780941|r 150 EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITRE 213 (311)
Q Consensus 150 ~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIRE 213 (311)
+..+.+.. ++ ..+++..-... ..+.+....-.+ -+.|+++...-...+.++.|++|.
T Consensus 152 ~~~~~l~~-~~-~~v~~t~I~~r---~~~~~a~~~G~~--V~e~~~~~~aa~e~~~L~~Eil~r 208 (211)
T PHA02518 152 EARKALAG-YG-LPILRNGTTQR---VAYADAAEAGGS--VLELPEDDKAAEEIIQLVKELFRG 208 (211)
T ss_pred HHHHHHHH-CC-CCCCCCCCCCC---HHHHHHHHCCCC--HHEECCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998-69-98106819887---899999975997--610997999999999999999986
No 453
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.64 E-value=0.0016 Score=42.62 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 218998338998688999998689
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~ 45 (311)
-.+++|+|+.++|||||+|.|.|-
T Consensus 24 Ge~~~i~GpSGsGKSTLL~~i~gl 47 (206)
T TIGR03608 24 GKMVAIVGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999879997099999999759
No 454
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.64 E-value=0.016 Score=36.12 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=73.2
Q ss_pred EEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH--CC---------HHHHHHHHHH----C
Q ss_conf 9739948999987984010123575321002345555321001100001000--00---------0012234544----2
Q gi|254780941|r 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VN---------IHDLLKEIAK----R 129 (311)
Q Consensus 65 ~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~--~~---------~~~il~~l~~----~ 129 (311)
...++..+.++|..|-...+. ++ ....++++.|+||+..+..-. .+ -..+++.+.+ .
T Consensus 179 f~~~~~~~~~~DVGGQRseRr-------KW-i~~Fd~V~aiiFv~slS~yDq~l~Ed~~~Nrm~eSl~LF~~I~n~~~f~ 250 (342)
T smart00275 179 FIVKKLFFRMFDVGGQRSERK-------KW-IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred EEECCEEEEEECCCCCCCHHH-------HH-HHHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHC
T ss_conf 876884699960798740233-------37-7761677689999512231545657776608999999999996486345
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHHHHHC----C---CCCCCCCCCCCCCC
Q ss_conf 8720257872110104345788886410012334311000138-74267899999836----6---22356896433430
Q gi|254780941|r 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG-HGCDDVLNYLCSTL----P---LAPWVYSADQISDL 201 (311)
Q Consensus 130 ~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g-~Gid~L~~~L~~~l----p---e~~~~y~~~~~Td~ 201 (311)
+.|+|+.+||.|+..++-- . .+....|| .-+| ...+...+++.+.- + ..+.+.+-...||.
T Consensus 251 ~t~iiLfLNK~Dlf~eKi~-----~----~~l~~~fp--~y~g~~~~~~~~~fi~~~F~~~~~~~~~r~~y~h~T~AtDt 319 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIK-----K----VPLVDYFP--DYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDT 319 (342)
T ss_pred CCCEEEEEECHHHHHHHCC-----C----CCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEECH
T ss_conf 7887999755899998727-----9----96011599--99999888999999999999857798897268666731450
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 25678998759999997
Q gi|254780941|r 202 PMFHFTAEITREKLFLH 218 (311)
Q Consensus 202 ~~~~~i~EiIREki~~~ 218 (311)
.....+-..+|+-|+..
T Consensus 320 ~~i~~vf~~v~d~Il~~ 336 (342)
T smart00275 320 RNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999
No 455
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.63 E-value=0.0017 Score=42.52 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.|||||++++|||||+|-|.|-.
T Consensus 351 ~vaiVG~SGsGKSTL~~LL~r~y 373 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999997799999982896
No 456
>KOG0065 consensus
Probab=96.62 E-value=0.0017 Score=42.57 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=20.9
Q ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85121-89983389986889999986892
Q gi|254780941|r 19 NSRSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 19 ~~ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
-.|.| .-|++|..+||||||+|-|.|++
T Consensus 813 ~~kPG~LTALMG~SGAGKTTLLdvLA~R~ 841 (1391)
T KOG0065 813 AFKPGVLTALMGESGAGKTTLLDVLAGRK 841 (1391)
T ss_pred EECCCCEEEHHCCCCCCHHHHHHHHHCCC
T ss_conf 86478364012477876577999985674
No 457
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0017 Score=42.55 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 121-89983389986889999986892
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+.| +|||+|++++|||||++.|.|--
T Consensus 25 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 699999999999998999999974385
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.60 E-value=0.00075 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18998338998688999998689
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~ 45 (311)
..++|+|..|+||+||+.+|+..
T Consensus 3 Pii~ivG~s~SGKTTLi~kli~~ 25 (170)
T PRK10751 3 PLLAIAAWSGTGKTTLLKKLIPA 25 (170)
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 77999946999999999999999
No 459
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.60 E-value=0.0017 Score=42.42 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.+.| .+||+|+.++|||||+|.|+|.
T Consensus 29 i~~Gei~aiiG~nGsGKSTL~~~i~G~ 55 (252)
T CHL00131 29 INAGEIHAIMGPNGSGKSTLSKVIAGH 55 (252)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 879989999999999999999997278
No 460
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.60 E-value=0.0017 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.0
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 121-8998338998688999998689
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+.| +++|+|++++|||||++.|.|-
T Consensus 24 ~~Ge~~~ivGpSGsGKSTLL~~i~gL 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999984499999999819
No 461
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0018 Score=42.29 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.+|||+|++++|||||++.|+|-.
T Consensus 30 e~vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999999999980999999996686
No 462
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.59 E-value=0.0018 Score=42.29 Aligned_cols=26 Identities=42% Similarity=0.685 Sum_probs=22.5
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.+.| ++||+|+.+||||||+++|.|-
T Consensus 27 i~~GE~~~iiGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999989996099999999756
No 463
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=96.59 E-value=0.0023 Score=41.62 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEE---------EEEEEEEECCEEEEEEECCCCHHHCCCCCCC
Q ss_conf 121-899833899868899999868920210588886021---------2789997399489999879840101235753
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS---------IVRGIVSEKESQIVFLDTPGIFNAKDSYHKL 90 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~---------~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~ 90 (311)
++| .||+.|+.++|||||-.-|+|=. +|..|+-+. +-..-..--+.|+||=|.||=++++......
T Consensus 36 ~~Ge~~gLLG~SG~GKSTLArlLlGLe----~P~~G~v~F~G~dl~~L~~~~~rafrR~vQlvFQD~~savNPr~tv~~i 111 (267)
T TIGR02769 36 EEGETVGLLGRSGCGKSTLARLLLGLE----KPAQGEVSFRGQDLSKLDRKQRRAFRRDVQLVFQDSPSAVNPRKTVREI 111 (267)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHCC----CCCCCEEEECCCCHHHCCHHHCCEEEEEEEEEEECCCCCCCHHHHHHHH
T ss_conf 377505523678873778999987507----8887404762564555081102111213678987474311625789999
Q ss_pred CCCHHHHHHH---------HHHHHCCCCHHHHHHH---------CCHHH--HHHHHHHCCCCCEEEE----EECCCHHHH
Q ss_conf 2100234555---------5321001100001000---------00001--2234544287202578----721101043
Q gi|254780941|r 91 MIRLSWSTIK---------HADIVCLVVDSHRELK---------VNIHD--LLKEIAKRSSRLILIL----NKIDCVKPE 146 (311)
Q Consensus 91 ~~~~~~~~l~---------~aDiil~VvDa~~~~~---------~~~~~--il~~l~~~~~p~IiVl----NKiDlv~~~ 146 (311)
+ .+..+.+. .+.-+|-.||-....- -+... +...+. -.|.++|+ --.|++-.-
T Consensus 112 i-~EPLrhl~~L~~s~~~~r~~~LL~~v~L~~~~~~k~P~qlSGGQLQRiniARALA--~~PkLivLDEavSnLD~~lQ~ 188 (267)
T TIGR02769 112 I-GEPLRHLTSLDESERKARIAELLELVGLRSEVADKLPRQLSGGQLQRINIARALA--VKPKLIVLDEAVSNLDLVLQA 188 (267)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEHHHHHHHHHHHHH
T ss_conf 8-6257766548899999999999986088967984287000574689999999973--089737532225576799999
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 457888864100123343
Q gi|254780941|r 147 RLLEQAEIANKLVFIEKT 164 (311)
Q Consensus 147 ~l~~~~~~~~~~~~~~~i 164 (311)
.++...+.+....+..-+
T Consensus 189 ~iL~lL~~L~q~~G~ayl 206 (267)
T TIGR02769 189 VILELLKKLQQEFGTAYL 206 (267)
T ss_pred HHHHHHHHHHHHHCCEEE
T ss_conf 999999999870095541
No 464
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0018 Score=42.38 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
++||+|+.+||||||+|.|.|.-
T Consensus 29 ~~aliG~nGaGKSTLl~~i~G~l 51 (273)
T PRK13547 29 VTALLGRNGAGKSTLLKVLAGEL 51 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999976999999995678
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.58 E-value=0.0019 Score=42.24 Aligned_cols=26 Identities=42% Similarity=0.776 Sum_probs=22.4
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 121-89983389986889999986892
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+.| +++|+|++.+|||||++.|.|..
T Consensus 33 ~~Gei~~ilGpnGaGKSTLl~~l~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ECCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 088199999899951999999985777
No 466
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0019 Score=42.12 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 121-8998338998688999998689
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+.| .++|+|+.+||||||+|.|.|.
T Consensus 31 ~~Gei~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 09849999989999889999998378
No 467
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0018 Score=42.28 Aligned_cols=26 Identities=46% Similarity=0.673 Sum_probs=22.4
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 121-89983389986889999986892
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
..| +++|+|+.++|||||++.|.|--
T Consensus 25 ~~Ge~~~iiGpsGsGKSTLl~~i~gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999899999999833999999997499
No 468
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0019 Score=42.14 Aligned_cols=25 Identities=48% Similarity=0.711 Sum_probs=22.2
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 121-8998338998688999998689
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+.| +++|+|+.++|||||+|.|.|-
T Consensus 23 ~~GE~v~iiG~nGaGKSTLl~~i~Gl 48 (233)
T PRK10771 23 ERGEQVAILGPSGAGKSTLLNLIAGF 48 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999998199999999659
No 469
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.57 E-value=0.0019 Score=42.11 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.|||+|+.++|||||++.|+|-
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~gl 53 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999999799999999603
No 470
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0019 Score=42.23 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.+++|+|+.++|||||++.|.|-.
T Consensus 24 e~~~iiGpSGsGKSTll~~i~GL~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999735999999998499
No 471
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.56 E-value=0.0017 Score=42.42 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=58.7
Q ss_pred ECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-
Q ss_conf 2110104345788886410012334311000138742678999998366223568964334302567899875999999-
Q gi|254780941|r 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFL- 217 (311)
Q Consensus 139 KiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~~~i~EiIREki~~- 217 (311)
=-|...++++++..+.+...+.. ++++||=. ++| ...|.+++ -.-.++.++-... +.|+.+...|.
T Consensus 161 aLD~~rk~EilPYLerL~~e~~i-P~lyVSHs----l~E-v~rLADrv----vvl~~GrV~a~G~---~~~v~~~~~l~p 227 (361)
T TIGR02142 161 ALDEPRKKEILPYLERLHAELKI-PILYVSHS----LDE-VARLADRV----VVLEDGRVEAAGP---LEEVWSSPDLPP 227 (361)
T ss_pred HCCHHHHHHHCCHHHHHHHHHCC-CEEEEECC----HHH-HHHHHCEE----EEEECCEECCCCC---HHHHHCCCCCCC
T ss_conf 40644466416167678987279-88999049----799-98760747----8743570103686---799953657772
Q ss_pred -HHHCCCCCCEEEEEEEEECCCCCCEEE----EEEEEEEC
Q ss_conf -730045642047885331066772358----99999827
Q gi|254780941|r 218 -HLHKEIPYSSCVVTEKWEEKKDGSILI----RQVIYVER 252 (311)
Q Consensus 218 -~l~~EiPY~~~v~v~~~~~~~~~~~~I----~~~I~v~k 252 (311)
.-+.|-=|-+...|+++.+ ..|...+ .+.++|++
T Consensus 228 ~~~~~~~g~~~~~~v~~~~~-~ygL~~l~l~e~~~l~V~~ 266 (361)
T TIGR02142 228 WLEREEAGSVLEGVVAEHDQ-HYGLTALRLGEDGHLWVPE 266 (361)
T ss_pred CCCCCCCCEEEEEEEECCCC-CCCCEECCCCCCCEEEEEC
T ss_conf 32578663365654110386-5320120158883899726
No 472
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.002 Score=42.08 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 12189983389986889999986892
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
..|.++++|+-+||||||+|.|+|--
T Consensus 24 ~~Gi~gllGpNGAGKSTll~~i~Gl~ 49 (211)
T cd03264 24 GPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 89759999999823999999997596
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0021 Score=41.94 Aligned_cols=27 Identities=41% Similarity=0.706 Sum_probs=22.7
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5121-89983389986889999986892
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.+.| .++|+|+..||||||+|.|.|..
T Consensus 30 i~~Ge~~~llGpnGaGKSTLl~~l~g~~ 57 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9288399999999998899999983798
No 474
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.53 E-value=0.0021 Score=41.93 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
++||+|+.++|||||++.|+|.-
T Consensus 33 ~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999985899999981895
No 475
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=96.52 E-value=0.0019 Score=42.17 Aligned_cols=47 Identities=32% Similarity=0.520 Sum_probs=31.1
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 121-899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
++| +|+|.|+++||||||+.+|-+.. +|+-+|-. +.+.++ .+|....
T Consensus 32 ~aGEcv~L~G~SGaGKSTlLk~lYaNY------lp~~G~i~---~~H~G~----~~DL~~a 79 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY------LPDSGRIL---VRHEGA----WVDLAQA 79 (224)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCC------CCCCCEEE---EEECCH----HHHHHCC
T ss_conf 367358853688876789999766304------74686777---762404----7675076
No 476
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.52 E-value=0.0021 Score=41.85 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
..|+|+|+.++|||||++.|+|-.
T Consensus 31 ~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999999999985999999996725
No 477
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0022 Score=41.76 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+++|+|++++|||||+|.|.|-
T Consensus 28 ~~~iiGpSGsGKSTllr~i~Gl 49 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999998399999999779
No 478
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.50 E-value=0.0022 Score=41.74 Aligned_cols=23 Identities=52% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.|||||++++|||||+|.|.|-.
T Consensus 363 ~vaiVG~SGsGKSTL~~LL~gly 385 (585)
T PRK13657 363 TVAIVGPTGAGKSTLINLLHRVF 385 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998898986999999986015
No 479
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.49 E-value=0.0021 Score=41.83 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.|||||++++|||||+|.|.|-.
T Consensus 343 ~vaIVG~SGsGKSTLl~LL~g~y 365 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89987999998799999999776
No 480
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.49 E-value=0.0022 Score=41.72 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
-+++|+|+.++|||||++.|.|--
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999986999999997289
No 481
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=96.48 E-value=0.0024 Score=41.46 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.++|+|+.++|||||+|+|.|-
T Consensus 34 i~~iiG~nGaGKSTLl~~i~G~ 55 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999888998899999998567
No 482
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0023 Score=41.67 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+++|+|++++|||||+|.|.|-
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999997799999999769
No 483
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.48 E-value=0.0021 Score=41.89 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-CEEEECCCCCCEEEE
Q ss_conf 8998338998688999998689-202105888860212
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA-KVSIVTHKVQTTRSI 60 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~-~vsivS~k~~TTr~~ 60 (311)
.|.|.|+++||||||+++|... ...++.+..-|||..
T Consensus 4 LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~ 41 (184)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA 41 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 99998998699999999998448998899987237899
No 484
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.47 E-value=0.0024 Score=41.52 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189983389986889999986892
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
..|||+|++.+|||||++.|.|-.
T Consensus 29 ~~vaivG~sGsGKSTll~ll~gl~ 52 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999999999985999999996776
No 485
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.47 E-value=0.0025 Score=41.37 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.+||+|+.+||||||+|.|+|.
T Consensus 29 i~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999998377
No 486
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.47 E-value=0.0022 Score=41.78 Aligned_cols=26 Identities=50% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 121-89983389986889999986892
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+.| .|||||++++|||||+|.|.|-.
T Consensus 365 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 391 (593)
T PRK10790 365 PSRNFVALVGHTGSGKSTLASLLMGYY 391 (593)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899789987999886899999999855
No 487
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0025 Score=41.42 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1899833899868899999868
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVG 44 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g 44 (311)
-+|||+|+..||||||+.+|-|
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 6899987888868999999866
No 488
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.46 E-value=0.0025 Score=41.43 Aligned_cols=23 Identities=48% Similarity=0.536 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.|||+|++++|||||+|.|+|-.
T Consensus 369 ~vaiVG~SGsGKSTL~~LL~r~y 391 (575)
T PRK11160 369 KVALLGRTGCGKSTLLQLLTRAW 391 (575)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899975999999986236
No 489
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0024 Score=41.49 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.4
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.+.| ++||+|+.++|||||++.|.|-
T Consensus 30 I~~Ge~~aiiG~nGsGKSTLl~~l~GL 56 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 869989999999998199999999707
No 490
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.46 E-value=0.0023 Score=41.67 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+++|+|+.++|||||++.|.|-
T Consensus 38 ~v~ivG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999985899999999669
No 491
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0025 Score=41.35 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
++||+|+.++|||||+++|.|-
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~Gl 75 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999949998499999999758
No 492
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.46 E-value=0.0026 Score=41.29 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+++|+|+.++|||||++.|.|--
T Consensus 35 ~~~i~G~sGsGKSTLlk~i~gl~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996466
No 493
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.0022 Score=41.71 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8998338998688999998689
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+|||+|+.++|||||++.|.|-
T Consensus 22 ~vaiiG~sGsGKSTLl~~l~GL 43 (276)
T PRK13634 22 YVAIIGHTGSGKSTLLQHLNGL 43 (276)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999996999999999749
No 494
>PTZ00243 ABC transporter; Provisional
Probab=96.45 E-value=0.0024 Score=41.58 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 42678999998366223568964334---302567899875999999730045642047885331066772358999998
Q gi|254780941|r 174 GCDDVLNYLCSTLPLAPWVYSADQIS---DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 (311)
Q Consensus 174 Gid~L~~~L~~~lpe~~~~y~~~~~T---d~~~~~~i~EiIREki~~~l~~EiPY~~~v~v~~~~~~~~~~~~I~~~I~v 250 (311)
|=.+|+-.....|..++..-==|+.| |...+..|.+.||++.=+++= -.++.+....-+ -|..+.+++=-+|
T Consensus 1449 GQRQLlcLARALLrr~skILlLDEATAsvD~~TD~lIQ~tIr~~F~~~TV----ItIAHRL~TI~d-~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTV----ITIAHRLHTVAQ-YDKIIVMDHGAVA 1523 (1560)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEE----EEEHHHHHHHHH-CCEEEEEECCEEE
T ss_conf 99999999999975799879987821058989999999999998289989----982613746986-8989998486899
Q ss_pred ECCCCCEEEECCC---CHHHHHHHHHHHHHHHHHHC
Q ss_conf 2798415487466---58899999999999999848
Q gi|254780941|r 251 ERPSQKKIMLGKN---GQNIKTISLEAKKEIAEILE 283 (311)
Q Consensus 251 ~k~sqk~IiiGk~---G~~ik~I~~~ar~~le~~~~ 283 (311)
|-.+....+--++ .++++.-|..+.+.+.++..
T Consensus 1524 E~gsP~eLl~~~~s~F~~mV~~~G~~~~~~~~~~~~ 1559 (1560)
T PTZ00243 1524 EMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVG 1559 (1560)
T ss_pred EECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 847679996499987999999978899999999852
No 495
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.45 E-value=0.0025 Score=41.41 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.6
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121-8998338998688999998689
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
.+.| .++|+|+..||||||+|.|+|-
T Consensus 23 v~~Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 879989999968999999999997077
No 496
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0025 Score=41.36 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
++||+|+.++|||||++.|.|--
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999983999999997677
No 497
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.0027 Score=41.23 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.1
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 121-8998338998688999998689
Q gi|254780941|r 21 RSG-CVALVGATNAGKSTLVNRFVGA 45 (311)
Q Consensus 21 ksg-~VaivG~pN~GKSTL~N~l~g~ 45 (311)
+.| ++||+|+.++|||||++.|.|-
T Consensus 33 ~~Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59989999999999799999999649
No 498
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.45 E-value=0.0025 Score=41.40 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=22.9
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5121-89983389986889999986892
Q gi|254780941|r 20 SRSG-CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 20 ~ksg-~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
.+.| .|||+|++++|||||++.|.|-.
T Consensus 37 i~~Ge~vaIvG~sGsGKSTL~~ll~gl~ 64 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8299999999999984999999996454
No 499
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.44 E-value=0.0024 Score=41.55 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89983389986889999986892
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAK 46 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~ 46 (311)
+|||+|+.++|||||++.|.|.-
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~ 58 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99999999987999999999872
No 500
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.0021 Score=41.91 Aligned_cols=118 Identities=20% Similarity=0.290 Sum_probs=59.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCCCE--------EEEEEEE---------------EEECCE
Q ss_conf 189983389986889999986------892021058---88860--------2127899---------------973994
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQTT--------RSIVRGI---------------VSEKES 70 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~TT--------r~~i~gi---------------~~~~~~ 70 (311)
|.|++||..+|||+|-+-.|. |.+|..++- +|+.- |-.+.-+ ......
T Consensus 207 ~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av~~~a~~~~~ 286 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCV 286 (407)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 08999899989789999999999997799179997066778899999999999796499818889999999999862899
Q ss_pred EEEEEECCCCH-HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCC-EEEEEECCCHHHH
Q ss_conf 89999879840-1012357532100234555532100110000100000001223454428720-2578721101043
Q gi|254780941|r 71 QIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDCVKPE 146 (311)
Q Consensus 71 qiifvDTPG~~-~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~-IiVlNKiDlv~~~ 146 (311)
.++++||.|-. ...+.+.+. +...+. -.-+..++++|+..... ........... .|+ =+|++|.|--.+-
T Consensus 287 DvVIIDTAGRl~~d~~Lm~EL--~ki~~v-i~P~~~lLV~dag~~~~-~v~qa~~~~~~--v~ItGiILTKLDgtAKG 358 (407)
T PRK12726 287 DHILIDTVGRNYLAEESVSEI--SAYTDV-VHPDLTCFTFSSGMKSA-DVMTILPKLAE--IPIDGFIITKMDETTRI 358 (407)
T ss_pred CEEEEECCCCCCCCHHHHHHH--HHHHHC-CCCCEEEEEECCCCCHH-HHHHHHHHHCC--CCCCEEEEEECCCCCCC
T ss_conf 989996999881349999999--998733-28966999936756699-99999987047--99987999701478985
Done!