HHsearch alignment for GI: 254780941 and conserved domain: pfam00071
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.77 E-value=8.1e-18 Score=135.14 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=100.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 998338998688999998689202105888860212789997399--489999879840101235753210023455553
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~--------~~~~~~~~~~~a 72 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFP-EEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER--------FRALRPLYYRGA 72 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH--------HHHHHHHHHCCC
T ss_conf 899997997799999999619999-87477413556789999999999999997898720--------467889986257
Q ss_pred HHHCCCCHHHHHHHCC-HHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2100110000100000-001223454---428720257872110104345-78888641001233431100013874267
Q gi|254780941|r 103 DIVCLVVDSHRELKVN-IHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 103 Diil~VvDa~~~~~~~-~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
T Consensus 73 d~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e~~~~a~~~~~-~y~e~Sak~g~gI~~ 151 (162)
T pfam00071 73 QGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEEGEALAKELGL-PFMETSAKTNENVEE 151 (162)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCC-EEEEECCCCCCCHHH
T ss_conf 6550423489889999999999999985798862889975247465188999999999998099-799973788829999
Q ss_pred HHHHHHHHC
Q ss_conf 899999836
Q gi|254780941|r 178 VLNYLCSTL 186 (311)
Q Consensus 178 L~~~L~~~l 186 (311)
T Consensus 152 ~F~~i~~~i 160 (162)
T pfam00071 152 AFEELAREI 160 (162)
T ss_pred HHHHHHHHH
T ss_conf 999999996