HHsearch alignment for GI: 254780941 and conserved domain: pfam03308

>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.38  E-value=7.5e-12  Score=96.54  Aligned_cols=188  Identities=18%  Similarity=0.224  Sum_probs=106.2

Q ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEE--CCCCCCEEEEEEEE---------------E-------
Q ss_conf             4368512189983389986889999986------8920210--58888602127899---------------9-------
Q gi|254780941|r   16 VQDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIV--THKVQTTRSIVRGI---------------V-------   65 (311)
Q Consensus        16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsiv--S~k~~TTr~~i~gi---------------~-------   65 (311)
T Consensus        23 ~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~  102 (267)
T pfam03308        23 MPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGA  102 (267)
T ss_pred             HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             74359955998768998879999999999999689868999978999888863001077776505899858864577888


Q ss_pred             ---------------EECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
Q ss_conf             ---------------73994899998798401012357532100234555532100110000100000001223454428
Q gi|254780941|r   66 ---------------SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS  130 (311)
Q Consensus        66 ---------------~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~  130 (311)
T Consensus       103 lGGls~~t~~~i~lleaaGfD~IivETVGVGQsE-----------~~v~~~aD~~llv~~Pg~--GDe-iQ~iK-aGImE  167 (267)
T pfam03308       103 LGGLSRATREAILLLDAAGFDVIIIETVGVGQSE-----------VDIANMADTFVLVTIPGG--GDD-LQGIK-AGLME  167 (267)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-----------HHHHHHCCEEEEEECCCC--CHH-HHHHH-HHHHH
T ss_conf             8871476999999999779999999247777530-----------355541576899955887--608-88987-53765


Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHCC-----CC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---C
Q ss_conf             72025787211010434578888641001-----23-343110001387426789999983662235689643343---0
Q gi|254780941|r  131 SRLILILNKIDCVKPERLLEQAEIANKLV-----FI-EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD---L  201 (311)
Q Consensus       131 ~p~IiVlNKiDlv~~~~l~~~~~~~~~~~-----~~-~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td---~  201 (311)
T Consensus       168 iaDi~vVNKaD~~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~---~l~~sG~l~~rR~~  244 (267)
T pfam03308       168 IADIYVVNKADLPGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHRE---FLTATGLLAARRRA  244 (267)
T ss_pred             HCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HHHHCCHHHHHHHH
T ss_conf             354899966764769999999999985179877899999899874788999999999999999---99978869999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             25678998759999997300
Q gi|254780941|r  202 PMFHFTAEITREKLFLHLHK  221 (311)
Q Consensus       202 ~~~~~i~EiIREki~~~l~~  221 (311)
T Consensus       245 q~~~w~~~~I~~~Ll~~l~~  264 (267)
T pfam03308       245 RIEEWLKTLVEDDLLKRVKA  264 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999974