HHsearch alignment for GI: 254780941 and conserved domain: pfam09439

>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.

Probab=99.07  E-value=7.6e-10  Score=83.56  Aligned_cols=112  Identities=18%  Similarity=0.286  Sum_probs=66.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEE--ECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             89983389986889999986892021--0588886021278999739948999987984010123575321002345555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSI--VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsi--vS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         5 tvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~~----~~~~~~~~~~~~lvD~PGh~klR~~~~-----~~~~~~~~   75 (181)
T pfam09439         5 AVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSAA----YKYMNNKGNSLTLIDFPGHVKLRYKLL-----ETLKDSSS   75 (181)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCE----EEEECCCCCEEEEEECCCCHHHHHHHH-----HHHHHHCC
T ss_conf             699986899989999999975994875888678640----687516896689998899689999999-----86430026


Q ss_pred             HHHHCCCCHHHH-H--HHCCHH---HHHH--HHHHCCCCCEEEEEECCCHH
Q ss_conf             321001100001-0--000000---1223--45442872025787211010
Q gi|254780941|r  102 ADIVCLVVDSHR-E--LKVNIH---DLLK--EIAKRSSRLILILNKIDCVK  144 (311)
Q Consensus       102 aDiil~VvDa~~-~--~~~~~~---~il~--~l~~~~~p~IiVlNKiDlv~  144 (311)
T Consensus        76 ~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~  126 (181)
T pfam09439        76 LRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFT  126 (181)
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCC
T ss_conf             449999997866566799999999999844543368997899973746335