HHsearch alignment for GI: 254780941 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.76 E-value=1.3e-17 Score=133.77 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=99.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101235753210023455553
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 14 ~kililG~~~~GKTsil~~l~~~~~~~~~pTvg~----~~~~~~~~~~~l~iwD~~Gq--------e~~r~l~~~Yy~~a 81 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESVTTIPTIGF----NVETVTYKNISFTVWDVGGQ--------DKIRPLWRHYYTNT 81 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC----EEEEEEECCEEEEEEECCCC--------CCCCHHHHHHCCCC
T ss_conf 9999998899998999999965997775797881----07999989899999989998--------54553677755776
Q ss_pred HHHCCCCHHHHHHHC-CHHH----HHHHHHHCCCCCEEEEEECCCHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 210011000010000-0001----223454428720257872110104---34578888641001233431100013874
Q gi|254780941|r 103 DIVCLVVDSHRELKV-NIHD----LLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 (311)
Q Consensus 103 Diil~VvDa~~~~~~-~~~~----il~~l~~~~~p~IiVlNKiDlv~~---~~l~~~~~~~~~~~~~~~i~~ISAk~g~G 174 (311)
T Consensus 82 ~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~G 161 (175)
T smart00177 82 QGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDG 161 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCC
T ss_conf 18999986687789999999999996315316986999984566767889999999968665407975999826878969
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 2678999998366
Q gi|254780941|r 175 CDDVLNYLCSTLP 187 (311)
Q Consensus 175 id~L~~~L~~~lp 187 (311)
T Consensus 162 I~e~f~wL~~~ik 174 (175)
T smart00177 162 LYEGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999999844